Wall clock time and date at job start Sat Apr 11 2020 02:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38597 * 120.32762 * 2 1 4 4 N 1.31492 * 120.90572 * 180.02562 * 3 2 1 5 5 C 1.32746 * 121.64255 * 0.02562 * 4 3 2 6 6 C 1.48167 * 119.72160 * 180.02562 * 5 4 3 7 7 O 1.21521 * 120.00003 * 104.52852 * 6 5 4 8 8 N 1.34773 * 120.00073 * 284.52973 * 6 5 4 9 9 C 1.47144 * 121.01124 * 354.92950 * 8 6 5 10 10 C 1.53048 * 107.68260 * 122.53516 * 9 8 6 11 11 C 1.51142 * 111.10032 * 54.41766 * 10 9 8 12 12 H 1.09008 * 108.45769 * 184.61275 * 11 10 9 13 13 C 1.53993 * 113.17329 * 304.85820 * 11 10 9 14 14 H 1.08999 * 112.72395 * 283.35353 * 13 11 10 15 15 C 1.56014 * 100.38800 * 162.97825 * 13 11 10 16 16 C 1.54505 * 102.62089 * 323.13531 * 15 13 11 17 17 N 1.46463 * 112.68446 * 64.66766 * 11 10 9 18 18 C 1.36946 * 126.05358 * 29.81601 * 17 11 10 19 19 H 1.07997 * 119.99760 * 359.97438 * 18 17 11 20 20 C 1.38807 * 119.99823 * 180.02562 * 18 17 11 21 21 N 1.31619 * 120.00339 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99705 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47234 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47196 * 120.00335 * 22 20 18 25 25 H 1.48505 * 109.47110 * 239.99905 * 22 20 18 26 26 C 1.45316 * 120.74238 * 174.44142 * 8 6 5 27 27 C 1.39269 * 120.55323 * 0.26493 * 5 4 3 28 28 C 1.50701 * 120.46755 * 179.70477 * 27 5 4 29 29 C 1.38583 * 120.32394 * 180.02562 * 2 1 3 30 30 H 1.08992 * 109.47521 * 90.00257 * 1 2 3 31 31 H 1.09004 * 109.46837 * 209.99787 * 1 2 3 32 32 H 1.08998 * 109.47238 * 329.99253 * 1 2 3 33 33 H 1.08011 * 119.54408 * 0.04721 * 3 2 1 34 34 H 1.09002 * 109.81291 * 2.99498 * 9 8 6 35 35 H 1.08999 * 109.87254 * 242.11881 * 9 8 6 36 36 H 1.08999 * 109.15090 * 294.00003 * 10 9 8 37 37 H 1.08995 * 109.15214 * 174.83295 * 10 9 8 38 38 H 1.08999 * 110.77822 * 81.41435 * 15 13 11 39 39 H 1.08995 * 110.78228 * 204.84988 * 15 13 11 40 40 H 1.09002 * 109.90062 * 263.45155 * 16 15 13 41 41 H 1.08994 * 110.04896 * 142.29513 * 16 15 13 42 42 H 0.97006 * 120.00149 * 179.97438 * 21 20 18 43 43 H 1.09006 * 108.30043 * 115.26174 * 26 8 6 44 44 H 1.08993 * 109.72039 * 356.12268 * 26 8 6 45 45 H 1.08999 * 109.46728 * 94.85393 * 28 27 5 46 46 H 1.09001 * 109.47358 * 214.84952 * 28 27 5 47 47 H 1.08997 * 109.47399 * 334.84966 * 28 27 5 48 48 H 1.08006 * 120.75764 * 359.95098 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1963 0.0000 4 7 3.5217 1.2096 -0.0005 5 6 4.2294 0.0865 -0.0015 6 6 5.7097 0.1511 -0.0015 7 8 6.3283 -0.0870 1.0170 8 7 6.3702 0.4741 -1.1310 9 6 5.6526 0.6585 -2.4024 10 6 5.9580 2.0705 -2.9079 11 6 7.4482 2.3045 -3.0015 12 1 7.6173 3.3435 -3.2848 13 6 8.1880 2.0367 -1.6778 14 1 8.0589 2.8406 -0.9531 15 6 9.6550 1.9154 -2.1949 16 6 9.4767 1.1956 -3.5503 17 7 8.0936 1.4446 -3.9961 18 6 7.5147 0.9576 -5.1376 19 1 6.4887 1.2024 -5.3695 20 6 8.2464 0.1486 -5.9961 21 7 9.4963 -0.1510 -5.7127 22 14 7.4565 -0.5163 -7.5528 23 1 6.0534 -0.0373 -7.6395 24 1 8.2160 -0.0387 -8.7362 25 1 7.4722 -2.0009 -7.5208 26 6 7.8114 0.6597 -1.1216 27 6 3.5923 -1.1518 -0.0077 28 6 4.3977 -2.4255 -0.0155 29 6 2.2067 -1.1962 -0.0005 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 1.6647 2.1305 0.0008 34 1 4.5804 0.5477 -2.2409 35 1 5.9944 -0.0768 -3.1308 36 1 5.5242 2.7976 -2.2215 37 1 5.5128 2.2013 -3.8942 38 1 10.0980 2.9013 -2.3360 39 1 10.2567 1.3138 -1.5137 40 1 9.6395 0.1250 -3.4261 41 1 10.1797 1.5953 -4.2810 42 1 10.0074 -0.7167 -6.3124 43 1 8.2604 -0.1157 -1.7424 44 1 8.1875 0.5663 -0.1029 45 1 4.5194 -2.7847 1.0064 46 1 3.8785 -3.1802 -0.6064 47 1 5.3777 -2.2331 -0.4522 48 1 1.6844 -2.1416 -0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036777959.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:24:47 Heat of formation + Delta-G solvation = 25.772615 kcal Electronic energy + Delta-G solvation = -29525.045227 eV Core-core repulsion = 25773.309702 eV Total energy + Delta-G solvation = -3751.735525 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.95435 -39.62101 -38.05133 -35.00618 -33.83670 -33.78223 -32.73607 -31.63177 -29.41596 -28.25597 -27.65276 -27.28771 -25.26762 -24.22460 -23.31241 -22.51652 -21.66058 -20.15161 -19.90049 -18.45072 -17.36261 -17.07266 -16.32450 -16.20971 -15.31528 -14.93434 -14.62472 -14.57522 -14.52482 -14.22229 -13.89154 -13.57457 -13.45137 -13.28715 -12.93814 -12.91627 -12.67916 -12.64816 -12.57369 -12.32227 -12.12154 -11.75463 -11.51481 -11.39613 -11.10095 -11.00921 -10.79587 -10.62400 -10.18357 -10.09162 -9.91007 -9.89146 -9.76229 -9.63431 -9.59214 -9.41627 -8.87535 -8.61435 -8.18796 -6.81945 -5.72888 -3.05345 0.75356 1.08631 2.64526 3.20510 3.36797 3.42391 3.45087 3.54726 4.25327 4.44382 4.47271 4.50881 4.70626 4.76566 4.94491 5.16047 5.20611 5.25024 5.26952 5.37905 5.39750 5.50221 5.53456 5.55710 5.56989 5.63478 5.65028 5.81022 5.91693 5.93576 5.97263 6.01725 6.08298 6.14092 6.32211 6.33225 6.37887 6.44396 6.47618 6.60251 6.72886 6.80709 6.92413 6.96247 7.56562 7.62024 7.70106 7.74098 7.81621 8.24028 8.31398 9.19946 9.82116 10.50113 11.39213 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.013152 B = 0.004096 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.506054 B = 6834.395127 C = 7773.435184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.126 4.126 3 C 0.094 3.906 4 N -0.447 5.447 5 C 0.096 3.904 6 C 0.577 3.423 7 O -0.540 6.540 8 N -0.582 5.582 9 C 0.121 3.879 10 C -0.127 4.127 11 C 0.170 3.830 12 H 0.019 0.981 13 C -0.115 4.115 14 H 0.078 0.922 15 C -0.142 4.142 16 C 0.176 3.824 17 N -0.595 5.595 18 C -0.223 4.223 19 H 0.079 0.921 20 C -0.006 4.006 21 N -0.919 5.919 22 Si 0.905 3.095 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.292 1.292 26 C 0.125 3.875 27 C -0.095 4.095 28 C -0.115 4.115 29 C -0.081 4.081 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.160 0.840 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.047 0.953 41 H 0.042 0.958 42 H 0.251 0.749 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.628 -0.564 10.987 18.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.128 4.128 3 C -0.066 4.066 4 N -0.156 5.156 5 C -0.043 4.043 6 C 0.362 3.638 7 O -0.418 6.418 8 N -0.312 5.312 9 C -0.001 4.001 10 C -0.166 4.166 11 C 0.063 3.937 12 H 0.037 0.963 13 C -0.135 4.135 14 H 0.097 0.903 15 C -0.181 4.181 16 C 0.052 3.948 17 N -0.321 5.321 18 C -0.351 4.351 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.567 5.567 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.219 1.219 26 C 0.003 3.997 27 C -0.098 4.098 28 C -0.172 4.172 29 C -0.106 4.106 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.177 0.823 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.093 0.907 47 H 0.091 0.909 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.736 -0.036 11.308 17.792 hybrid contribution -0.868 -1.034 -1.017 1.691 sum -14.604 -1.071 10.291 17.898 Atomic orbital electron populations 1.20738 0.89954 1.03199 1.02821 1.21081 0.97702 0.94082 0.99975 1.22694 0.89313 0.97640 0.96903 1.67647 1.08299 1.29633 1.10057 1.20939 0.94524 0.89226 0.99597 1.17854 0.85509 0.76985 0.83459 1.90762 1.68005 1.50466 1.32532 1.47693 1.08691 1.66291 1.08526 1.21726 0.94932 0.99120 0.84352 1.21569 0.98183 0.95728 1.01091 1.20267 0.90633 0.94397 0.88426 0.96319 1.22732 0.97171 0.96288 0.97349 0.90326 1.23138 0.94649 1.00710 0.99574 1.21243 0.86336 0.97755 0.89504 1.44356 1.09095 1.57181 1.21448 1.18998 0.96026 1.23943 0.96137 0.90358 1.24755 0.96180 1.00480 0.98868 1.69965 1.08055 1.41086 1.37554 0.86144 0.78265 0.78505 0.83448 1.20578 1.21837 1.21880 1.21382 0.78764 0.97643 1.01900 1.20829 0.94552 0.95820 0.98567 1.20808 0.99786 0.93490 1.03156 1.21321 0.92778 0.98496 0.98034 0.90599 0.91253 0.91006 0.82323 0.91723 0.89090 0.92350 0.90784 0.92297 0.91958 0.93525 0.93958 0.93870 0.90297 0.90069 0.90169 0.90672 0.90929 0.84349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.03 36.00 0.36 -0.30 16 2 C -0.13 -1.21 5.91 -104.36 -0.62 -1.83 16 3 C 0.09 1.07 10.86 -17.56 -0.19 0.88 16 4 N -0.45 -6.71 10.10 -9.80 -0.10 -6.81 16 5 C 0.10 1.51 4.59 -83.01 -0.38 1.13 16 6 C 0.58 10.42 5.71 -12.18 -0.07 10.35 16 7 O -0.54 -11.05 16.52 5.35 0.09 -10.96 16 8 N -0.58 -10.46 2.92 -174.94 -0.51 -10.97 16 9 C 0.12 2.14 6.25 -3.67 -0.02 2.11 16 10 C -0.13 -2.28 5.17 -27.64 -0.14 -2.42 16 11 C 0.17 3.41 2.89 -68.37 -0.20 3.22 16 12 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 13 C -0.11 -2.08 3.88 -88.38 -0.34 -2.42 16 14 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 15 C -0.14 -2.62 6.29 -24.33 -0.15 -2.77 16 16 C 0.18 4.10 4.64 -2.74 -0.01 4.09 16 17 N -0.59 -14.14 3.08 -164.50 -0.51 -14.65 16 18 C -0.22 -5.76 8.92 -15.06 -0.13 -5.90 16 19 H 0.08 1.96 6.66 -52.49 -0.35 1.61 16 20 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 21 N -0.92 -26.06 10.38 55.49 0.58 -25.49 16 22 Si 0.91 21.39 29.55 -169.99 -5.02 16.36 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 C 0.13 2.31 5.35 -4.57 -0.02 2.28 16 27 C -0.10 -1.24 5.93 -104.09 -0.62 -1.86 16 28 C -0.12 -1.35 9.71 36.01 0.35 -1.01 16 29 C -0.08 -0.83 9.55 -39.31 -0.38 -1.20 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 32 H 0.07 0.36 8.09 -51.93 -0.42 -0.07 16 33 H 0.16 1.34 8.06 -52.48 -0.42 0.92 16 34 H 0.06 1.06 6.23 -51.93 -0.32 0.73 16 35 H 0.09 1.81 7.38 -51.93 -0.38 1.43 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.36 6.98 -51.93 -0.36 1.00 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.06 1.05 7.97 -51.93 -0.41 0.63 16 40 H 0.05 1.20 6.99 -51.93 -0.36 0.84 16 41 H 0.04 1.10 7.56 -51.93 -0.39 0.71 16 42 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.08 1.60 6.80 -51.93 -0.35 1.25 16 44 H 0.08 1.48 6.99 -51.93 -0.36 1.11 16 45 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 47 H 0.07 1.01 6.91 -51.93 -0.36 0.65 16 48 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 373.10 15.07 5.62 5.62 Total: -1.00 -31.27 373.10 -9.96 -41.23 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -7.44 Total: 1.56 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -2.67 Total: 4.09 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: -0.54 Total: -57.91 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.27 -9.96 -41.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036777959.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.005 kcal (2) G-P(sol) polarization free energy of solvation -31.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds