Wall clock time and date at job start Sat Apr 11 2020 02:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38620 * 120.75630 * 2 1 4 4 C 1.38558 * 119.35297 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.55290 * 179.97438 * 4 3 2 6 6 N 1.31526 * 120.90348 * 359.97438 * 4 3 2 7 7 C 1.32715 * 121.64064 * 0.02562 * 6 4 3 8 8 C 1.48169 * 119.72422 * 179.97438 * 7 6 4 9 9 O 1.21515 * 120.00439 * 197.90859 * 8 7 6 10 10 N 1.34777 * 119.99695 * 17.91233 * 8 7 6 11 11 C 1.46952 * 120.44740 * 359.77632 * 10 8 7 12 12 C 1.53591 * 108.52314 * 125.71763 * 11 10 8 13 13 H 1.09003 * 110.59504 * 172.18360 * 12 11 10 14 14 C 1.53369 * 108.68513 * 294.37534 * 12 11 10 15 15 C 1.53463 * 109.21769 * 60.42536 * 14 12 11 16 16 C 1.53006 * 109.92542 * 60.29530 * 15 14 12 17 17 C 1.53368 * 109.24814 * 299.64657 * 16 15 14 18 18 H 1.09008 * 111.08618 * 177.84550 * 17 16 15 19 19 C 1.46952 * 120.44265 * 179.74941 * 10 8 7 20 20 N 1.47564 * 107.77046 * 51.16460 * 12 11 10 21 21 C 1.36933 * 121.61048 * 120.44890 * 20 12 11 22 22 H 1.08003 * 120.00184 * 205.65259 * 21 20 12 23 23 C 1.38812 * 120.00354 * 25.65234 * 21 20 12 24 24 N 1.31622 * 119.99433 * 25.23506 * 23 21 20 25 25 Si 1.86794 * 120.00256 * 205.23240 * 23 21 20 26 26 H 1.48501 * 109.47054 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47391 * 119.99974 * 25 23 21 28 28 H 1.48504 * 109.46962 * 239.99905 * 25 23 21 29 29 C 1.38587 * 120.75332 * 180.25730 * 2 1 3 30 30 H 1.08995 * 109.46968 * 89.99936 * 1 2 3 31 31 H 1.09001 * 109.46973 * 210.00121 * 1 2 3 32 32 H 1.09004 * 109.46601 * 329.99862 * 1 2 3 33 33 H 1.07996 * 120.32552 * 0.02562 * 3 2 1 34 34 H 1.09002 * 109.47359 * 270.02550 * 5 4 3 35 35 H 1.08997 * 109.46892 * 30.01979 * 5 4 3 36 36 H 1.08991 * 109.47405 * 150.02089 * 5 4 3 37 37 H 1.09000 * 109.62599 * 6.00737 * 11 10 8 38 38 H 1.09000 * 109.78747 * 245.52647 * 11 10 8 39 39 H 1.09007 * 109.50134 * 180.24726 * 14 12 11 40 40 H 1.08997 * 109.51127 * 300.37077 * 14 12 11 41 41 H 1.09008 * 109.16580 * 300.27453 * 15 14 12 42 42 H 1.09000 * 109.48549 * 180.51944 * 15 14 12 43 43 H 1.08996 * 109.51071 * 179.70767 * 16 15 14 44 44 H 1.09008 * 109.54270 * 59.59767 * 16 15 14 45 45 H 1.08996 * 109.62473 * 353.98152 * 19 10 8 46 46 H 1.09005 * 109.62077 * 114.35049 * 19 10 8 47 47 H 0.97001 * 120.00086 * 2.26065 * 24 23 21 48 48 H 1.08005 * 120.47446 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2160 1.1912 0.0000 4 6 3.6011 1.1573 -0.0005 5 6 4.3763 2.4496 -0.0011 6 7 4.2488 0.0126 -0.0005 7 6 3.6082 -1.1498 -0.0005 8 6 4.3806 -2.4142 -0.0011 9 8 3.8427 -3.4547 -0.3247 10 7 5.6798 -2.4104 0.3574 11 6 6.3414 -1.1571 0.7458 12 6 6.9767 -1.3496 2.1309 13 1 7.5926 -0.4894 2.3932 14 6 5.8586 -1.5617 3.1591 15 6 5.0558 -2.8138 2.7813 16 6 5.9721 -4.0391 2.7771 17 6 7.0898 -3.8311 1.7477 18 1 7.7835 -4.6720 1.7467 19 6 6.4536 -3.6597 0.3656 20 7 7.7927 -2.5782 2.0852 21 6 9.1383 -2.5559 2.3382 22 1 9.7795 -3.3168 1.9182 23 6 9.6784 -1.5553 3.1344 24 7 8.9265 -0.9472 4.0274 25 14 11.4721 -1.0719 2.9387 26 1 12.0948 -1.9004 1.8752 27 1 11.5602 0.3625 2.5647 28 1 12.1873 -1.2939 4.2210 29 6 2.2157 -1.1910 -0.0053 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 1.6937 2.1365 0.0004 34 1 4.5624 2.7613 -1.0289 35 1 3.8003 3.2190 0.5131 36 1 5.3267 2.3035 0.5120 37 1 5.6066 -0.3532 0.7885 38 1 7.1150 -0.9078 0.0196 39 1 6.2951 -1.6955 4.1489 40 1 5.2003 -0.6929 3.1654 41 1 4.6275 -2.6783 1.7881 42 1 4.2539 -2.9635 3.5043 43 1 5.3944 -4.9249 2.5133 44 1 6.4090 -4.1711 3.7671 45 1 5.7925 -4.5012 0.1585 46 1 7.2340 -3.6118 -0.3939 47 1 8.0042 -1.2205 4.1518 48 1 1.6959 -2.1377 -0.0100 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039714313.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:25:34 Heat of formation + Delta-G solvation = 64.153081 kcal Electronic energy + Delta-G solvation = -30466.438138 eV Core-core repulsion = 26716.366914 eV Total energy + Delta-G solvation = -3750.071223 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.26616 -39.83543 -37.76612 -34.72081 -33.93789 -33.13949 -32.59684 -31.82767 -30.11855 -28.26687 -27.72894 -26.92029 -25.62203 -24.43378 -23.10596 -21.49156 -21.42266 -21.15404 -19.78897 -18.57792 -17.58012 -16.81813 -16.38358 -16.05844 -15.50453 -15.27239 -14.50322 -14.32195 -14.22507 -13.94238 -13.67578 -13.57419 -13.42271 -13.32028 -13.13849 -12.85690 -12.83959 -12.41785 -12.33287 -12.25999 -12.14296 -12.01004 -11.75568 -11.53228 -11.03979 -10.78124 -10.59603 -10.26837 -10.17816 -10.16107 -10.02078 -9.88701 -9.68095 -9.60784 -9.28289 -9.07252 -8.60991 -8.41958 -7.88709 -6.71636 -6.07030 -3.18187 0.63655 1.04324 2.83165 3.27168 3.51603 3.54045 3.67591 3.74677 4.05699 4.38433 4.51387 4.59575 4.82476 4.91753 5.05536 5.13791 5.22049 5.24997 5.39901 5.40226 5.49462 5.52659 5.59561 5.65306 5.68254 5.75500 5.79487 5.83940 5.93238 5.98817 6.03294 6.09606 6.22571 6.28272 6.36779 6.39901 6.45055 6.49892 6.57056 6.72073 6.85241 6.86828 6.95898 7.10179 7.19556 7.24987 7.66767 7.87766 7.98302 8.42200 8.59189 9.11563 9.85138 10.33004 11.25226 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.015951 B = 0.004507 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.923679 B = 6210.603541 C = 7141.719598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.046 4.046 3 C -0.157 4.157 4 C 0.125 3.875 5 C -0.107 4.107 6 N -0.445 5.445 7 C 0.099 3.901 8 C 0.565 3.435 9 O -0.552 6.552 10 N -0.563 5.563 11 C 0.052 3.948 12 C 0.154 3.846 13 H 0.105 0.895 14 C -0.122 4.122 15 C -0.136 4.136 16 C -0.124 4.124 17 C 0.155 3.845 18 H 0.079 0.921 19 C 0.097 3.903 20 N -0.589 5.589 21 C -0.344 4.344 22 H 0.059 0.941 23 C -0.025 4.025 24 N -0.923 5.923 25 Si 1.071 2.929 26 H -0.293 1.293 27 H -0.291 1.291 28 H -0.295 1.295 29 C -0.124 4.124 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.137 0.863 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.145 0.855 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.041 0.959 41 H 0.079 0.921 42 H 0.033 0.967 43 H 0.046 0.954 44 H 0.056 0.944 45 H 0.082 0.918 46 H 0.065 0.935 47 H 0.275 0.725 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.023 5.420 -7.880 17.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.053 4.053 3 C -0.177 4.177 4 C -0.014 4.014 5 C -0.164 4.164 6 N -0.159 5.159 7 C -0.039 4.039 8 C 0.353 3.647 9 O -0.431 6.431 10 N -0.292 5.292 11 C -0.072 4.072 12 C 0.047 3.953 13 H 0.123 0.877 14 C -0.161 4.161 15 C -0.175 4.175 16 C -0.163 4.163 17 C 0.047 3.953 18 H 0.097 0.903 19 C -0.026 4.026 20 N -0.311 5.311 21 C -0.473 4.473 22 H 0.077 0.923 23 C -0.227 4.227 24 N -0.565 5.565 25 Si 0.901 3.099 26 H -0.219 1.219 27 H -0.217 1.217 28 H -0.222 1.222 29 C -0.145 4.145 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.155 0.845 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.160 0.840 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.096 0.904 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.101 0.899 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.109 5.864 -7.508 16.205 hybrid contribution -1.917 -1.169 -0.336 2.270 sum -15.026 4.695 -7.844 17.588 Atomic orbital electron populations 1.20825 0.89771 1.03543 1.03009 1.20313 0.96996 0.92532 0.95498 1.22002 0.94715 0.98755 1.02222 1.21537 0.91328 0.94228 0.94257 1.20775 1.00798 0.91471 1.03369 1.67509 1.38368 0.97773 1.12218 1.21259 0.91729 0.92184 0.98705 1.17648 0.82140 0.86986 0.77971 1.90744 1.69784 1.31878 1.50726 1.48056 1.08682 1.10639 1.61861 1.23817 0.99138 0.86357 0.97859 1.21346 0.90906 0.92204 0.90889 0.87703 1.22053 0.97477 0.95916 1.00675 1.22141 0.97416 0.95804 1.02092 1.21945 0.97352 0.96598 1.00396 1.21097 0.92435 0.91007 0.90722 0.90280 1.22237 0.94718 0.85885 0.99809 1.44531 1.04922 1.00126 1.81491 1.20016 0.82203 1.15950 1.29110 0.92342 1.25764 1.05912 0.98198 0.92823 1.70747 1.10708 1.46400 1.28693 0.83432 0.74990 0.76074 0.75389 1.21938 1.21738 1.22250 1.21920 0.93629 0.99453 0.99503 0.90368 0.90763 0.90852 0.84491 0.90137 0.90542 0.89703 0.83958 0.92154 0.91875 0.94034 0.90357 0.94835 0.93578 0.92524 0.89929 0.91677 0.91152 0.83737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.06 36.01 0.36 -0.44 16 2 C -0.05 -0.48 5.91 -104.35 -0.62 -1.10 16 3 C -0.16 -1.58 9.45 -39.32 -0.37 -1.95 16 4 C 0.13 1.51 6.78 -82.60 -0.56 0.95 16 5 C -0.11 -0.99 10.17 36.01 0.37 -0.62 16 6 N -0.45 -6.79 6.10 -6.06 -0.04 -6.82 16 7 C 0.10 1.60 6.49 -83.01 -0.54 1.06 16 8 C 0.56 10.62 4.97 -12.18 -0.06 10.56 16 9 O -0.55 -11.24 15.86 5.35 0.08 -11.15 16 10 N -0.56 -10.92 1.65 -173.52 -0.29 -11.21 16 11 C 0.05 1.03 5.50 -3.49 -0.02 1.01 16 12 C 0.15 3.51 2.46 -66.85 -0.16 3.34 16 13 H 0.11 2.71 5.92 -51.93 -0.31 2.40 16 14 C -0.12 -2.61 5.30 -26.30 -0.14 -2.75 16 15 C -0.14 -2.74 5.56 -26.49 -0.15 -2.89 16 16 C -0.12 -2.52 5.58 -26.54 -0.15 -2.67 16 17 C 0.16 3.32 3.60 -67.09 -0.24 3.08 16 18 H 0.08 1.67 8.01 -51.92 -0.42 1.26 16 19 C 0.10 1.90 5.86 -3.73 -0.02 1.88 16 20 N -0.59 -14.38 2.42 -155.71 -0.38 -14.76 16 21 C -0.34 -9.37 9.64 -15.06 -0.15 -9.52 16 22 H 0.06 1.61 7.95 -52.48 -0.42 1.19 16 23 C -0.03 -0.70 4.81 -17.43 -0.08 -0.78 16 24 N -0.92 -26.91 12.35 55.49 0.69 -26.22 16 25 Si 1.07 25.03 29.99 -169.99 -5.10 19.94 16 26 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.30 -6.92 7.11 56.52 0.40 -6.52 16 29 C -0.12 -1.68 9.33 -39.05 -0.36 -2.04 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.50 8.10 -51.93 -0.42 0.07 16 32 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 33 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.53 8.08 -51.93 -0.42 0.11 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.14 2.63 3.76 -90.64 -0.34 2.29 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.06 1.51 6.48 -51.93 -0.34 1.17 16 40 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 1.56 2.48 -52.45 -0.13 1.43 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 45 H 0.08 1.56 6.98 -51.93 -0.36 1.20 16 46 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.28 7.93 4.67 -40.82 -0.19 7.74 16 48 H 0.14 1.87 7.75 -52.48 -0.41 1.47 16 LS Contribution 360.78 15.07 5.44 5.44 Total: -1.00 -31.91 360.78 -9.68 -41.59 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -7.19 Total: 6.09 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -2.90 Total: -2.89 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -0.01 Total: -59.01 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.08 Total: -11.15 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.10 Total: 19.94 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.91 -9.68 -41.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039714313.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.739 kcal (2) G-P(sol) polarization free energy of solvation -31.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds