Wall clock time and date at job start Sat Apr 11 2020 02:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38620 * 120.75630 * 2 1 4 4 C 1.38558 * 119.35297 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.55290 * 179.97438 * 4 3 2 6 6 N 1.31526 * 120.90348 * 359.97438 * 4 3 2 7 7 C 1.32715 * 121.64064 * 0.02562 * 6 4 3 8 8 C 1.48169 * 119.72422 * 179.97438 * 7 6 4 9 9 O 1.21515 * 120.00439 * 197.90859 * 8 7 6 10 10 N 1.34777 * 119.99695 * 17.91233 * 8 7 6 11 11 C 1.46952 * 120.44740 * 359.77632 * 10 8 7 12 12 C 1.53591 * 108.52314 * 125.71763 * 11 10 8 13 13 H 1.09003 * 110.59504 * 172.18360 * 12 11 10 14 14 C 1.53369 * 108.68513 * 294.37534 * 12 11 10 15 15 C 1.53463 * 109.21769 * 60.42536 * 14 12 11 16 16 C 1.53006 * 109.92542 * 60.29530 * 15 14 12 17 17 C 1.53368 * 109.24814 * 299.64657 * 16 15 14 18 18 H 1.09008 * 111.08618 * 177.84550 * 17 16 15 19 19 C 1.46952 * 120.44265 * 179.74941 * 10 8 7 20 20 N 1.47564 * 107.77046 * 51.16460 * 12 11 10 21 21 C 1.36933 * 121.61048 * 120.44890 * 20 12 11 22 22 H 1.08003 * 120.00184 * 205.65259 * 21 20 12 23 23 C 1.38812 * 120.00354 * 25.65234 * 21 20 12 24 24 N 1.31622 * 119.99433 * 25.23506 * 23 21 20 25 25 Si 1.86794 * 120.00256 * 205.23240 * 23 21 20 26 26 H 1.48501 * 109.47054 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47391 * 119.99974 * 25 23 21 28 28 H 1.48504 * 109.46962 * 239.99905 * 25 23 21 29 29 C 1.38587 * 120.75332 * 180.25730 * 2 1 3 30 30 H 1.08995 * 109.46968 * 89.99936 * 1 2 3 31 31 H 1.09001 * 109.46973 * 210.00121 * 1 2 3 32 32 H 1.09004 * 109.46601 * 329.99862 * 1 2 3 33 33 H 1.07996 * 120.32552 * 0.02562 * 3 2 1 34 34 H 1.09002 * 109.47359 * 270.02550 * 5 4 3 35 35 H 1.08997 * 109.46892 * 30.01979 * 5 4 3 36 36 H 1.08991 * 109.47405 * 150.02089 * 5 4 3 37 37 H 1.09000 * 109.62599 * 6.00737 * 11 10 8 38 38 H 1.09000 * 109.78747 * 245.52647 * 11 10 8 39 39 H 1.09007 * 109.50134 * 180.24726 * 14 12 11 40 40 H 1.08997 * 109.51127 * 300.37077 * 14 12 11 41 41 H 1.09008 * 109.16580 * 300.27453 * 15 14 12 42 42 H 1.09000 * 109.48549 * 180.51944 * 15 14 12 43 43 H 1.08996 * 109.51071 * 179.70767 * 16 15 14 44 44 H 1.09008 * 109.54270 * 59.59767 * 16 15 14 45 45 H 1.08996 * 109.62473 * 353.98152 * 19 10 8 46 46 H 1.09005 * 109.62077 * 114.35049 * 19 10 8 47 47 H 0.97001 * 120.00086 * 2.26065 * 24 23 21 48 48 H 1.08005 * 120.47446 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2160 1.1912 0.0000 4 6 3.6011 1.1573 -0.0005 5 6 4.3763 2.4496 -0.0011 6 7 4.2488 0.0126 -0.0005 7 6 3.6082 -1.1498 -0.0005 8 6 4.3806 -2.4142 -0.0011 9 8 3.8427 -3.4547 -0.3247 10 7 5.6798 -2.4104 0.3574 11 6 6.3414 -1.1571 0.7458 12 6 6.9767 -1.3496 2.1309 13 1 7.5926 -0.4894 2.3932 14 6 5.8586 -1.5617 3.1591 15 6 5.0558 -2.8138 2.7813 16 6 5.9721 -4.0391 2.7771 17 6 7.0898 -3.8311 1.7477 18 1 7.7835 -4.6720 1.7467 19 6 6.4536 -3.6597 0.3656 20 7 7.7927 -2.5782 2.0852 21 6 9.1383 -2.5559 2.3382 22 1 9.7795 -3.3168 1.9182 23 6 9.6784 -1.5553 3.1344 24 7 8.9265 -0.9472 4.0274 25 14 11.4721 -1.0719 2.9387 26 1 12.0948 -1.9004 1.8752 27 1 11.5602 0.3625 2.5647 28 1 12.1873 -1.2939 4.2210 29 6 2.2157 -1.1910 -0.0053 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 1.6937 2.1365 0.0004 34 1 4.5624 2.7613 -1.0289 35 1 3.8003 3.2190 0.5131 36 1 5.3267 2.3035 0.5120 37 1 5.6066 -0.3532 0.7885 38 1 7.1150 -0.9078 0.0196 39 1 6.2951 -1.6955 4.1489 40 1 5.2003 -0.6929 3.1654 41 1 4.6275 -2.6783 1.7881 42 1 4.2539 -2.9635 3.5043 43 1 5.3944 -4.9249 2.5133 44 1 6.4090 -4.1711 3.7671 45 1 5.7925 -4.5012 0.1585 46 1 7.2340 -3.6118 -0.3939 47 1 8.0042 -1.2205 4.1518 48 1 1.6959 -2.1377 -0.0100 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039714313.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:25:33 Heat of formation + Delta-G solvation = 47.267671 kcal Electronic energy + Delta-G solvation = -30467.170344 eV Core-core repulsion = 26716.366914 eV Total energy + Delta-G solvation = -3750.803429 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.62316 -41.07417 -39.34699 -36.05647 -35.31864 -34.58646 -34.00310 -33.34143 -32.03602 -29.17208 -28.72129 -28.28247 -27.26762 -25.95748 -24.73174 -23.15430 -22.98761 -22.23146 -21.19368 -20.43692 -19.05870 -18.23298 -17.58441 -17.20529 -16.95663 -16.65105 -16.09477 -15.90421 -15.67349 -15.47950 -15.27604 -14.87445 -14.61359 -14.60862 -14.35654 -14.11909 -14.05151 -13.86137 -13.55985 -13.36429 -13.32505 -13.10770 -13.10228 -12.74799 -12.66392 -12.48497 -12.25570 -12.01250 -11.93420 -11.89622 -11.74046 -11.41741 -11.38401 -11.11409 -10.55384 -10.45112 -10.04692 -9.92207 -9.57945 -8.67533 -8.21196 -5.31403 -0.39463 0.14351 1.55993 1.59646 1.67289 1.82929 1.85686 2.64858 2.68361 2.93310 3.26260 3.39525 3.48308 3.65598 3.91991 3.96716 3.98046 4.01270 4.04304 4.08030 4.21321 4.27035 4.42093 4.45300 4.55808 4.59257 4.63994 4.69093 4.73025 4.73892 4.80006 4.80191 4.83728 4.87435 4.99119 5.00801 5.08104 5.12480 5.18881 5.25282 5.26600 5.27941 5.32133 5.46985 5.53962 5.78160 5.85777 6.30914 6.48563 6.67172 6.99472 7.08209 7.79699 8.29037 9.08715 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.015951 B = 0.004507 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.923679 B = 6210.603541 C = 7141.719598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.040 4.040 3 C -0.140 4.140 4 C 0.114 3.886 5 C -0.106 4.106 6 N -0.476 5.476 7 C 0.066 3.934 8 C 0.565 3.435 9 O -0.572 6.572 10 N -0.569 5.569 11 C 0.066 3.934 12 C 0.155 3.845 13 H 0.070 0.930 14 C -0.110 4.110 15 C -0.133 4.133 16 C -0.118 4.118 17 C 0.150 3.850 18 H 0.076 0.924 19 C 0.104 3.896 20 N -0.604 5.604 21 C -0.352 4.352 22 H 0.050 0.950 23 C -0.071 4.071 24 N -0.949 5.949 25 Si 1.118 2.882 26 H -0.278 1.278 27 H -0.286 1.286 28 H -0.294 1.294 29 C -0.130 4.130 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.180 0.820 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.166 0.834 38 H 0.044 0.956 39 H 0.032 0.968 40 H 0.055 0.945 41 H 0.087 0.913 42 H 0.046 0.954 43 H 0.068 0.932 44 H 0.036 0.964 45 H 0.092 0.908 46 H 0.062 0.938 47 H 0.267 0.733 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.570 7.081 -8.957 20.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.048 4.048 3 C -0.159 4.159 4 C -0.025 4.025 5 C -0.163 4.163 6 N -0.190 5.190 7 C -0.069 4.069 8 C 0.355 3.645 9 O -0.452 6.452 10 N -0.299 5.299 11 C -0.057 4.057 12 C 0.048 3.952 13 H 0.088 0.912 14 C -0.149 4.149 15 C -0.171 4.171 16 C -0.157 4.157 17 C 0.043 3.957 18 H 0.094 0.906 19 C -0.020 4.020 20 N -0.327 5.327 21 C -0.481 4.481 22 H 0.068 0.932 23 C -0.268 4.268 24 N -0.593 5.593 25 Si 0.944 3.056 26 H -0.204 1.204 27 H -0.212 1.212 28 H -0.222 1.222 29 C -0.151 4.151 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.197 0.803 34 H 0.112 0.888 35 H 0.125 0.875 36 H 0.084 0.916 37 H 0.181 0.819 38 H 0.063 0.937 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.104 0.896 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.055 0.945 45 H 0.111 0.889 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.688 7.503 -8.604 19.402 hybrid contribution -1.254 -1.641 -0.055 2.066 sum -16.942 5.861 -8.659 19.909 Atomic orbital electron populations 1.20932 0.86844 1.04842 1.04318 1.20746 0.98916 0.91489 0.93625 1.22459 0.93812 1.00354 0.99298 1.22063 0.92840 0.93876 0.93674 1.20881 1.00084 0.90933 1.04411 1.67121 1.39604 0.98496 1.13747 1.20906 0.92438 0.91331 1.02271 1.18103 0.81606 0.88049 0.76747 1.90714 1.70013 1.33081 1.51424 1.48042 1.09216 1.10035 1.62587 1.23698 0.99251 0.87460 0.95334 1.21257 0.90653 0.90395 0.92906 0.91159 1.21888 0.97237 0.97310 0.98509 1.22130 0.97329 0.94763 1.02870 1.21869 0.97200 0.97754 0.98891 1.21228 0.92647 0.89787 0.92073 0.90610 1.22066 0.94860 0.86710 0.98317 1.44693 1.04578 1.01744 1.81729 1.20218 0.83730 1.15732 1.28427 0.93205 1.26989 1.09019 0.98378 0.92431 1.70824 1.10732 1.47478 1.30298 0.82795 0.71071 0.76121 0.75630 1.20362 1.21240 1.22152 1.22045 0.92630 1.00873 0.99550 0.88859 0.90530 0.88574 0.80291 0.88787 0.87504 0.91639 0.81919 0.93712 0.94917 0.92663 0.89553 0.93558 0.91384 0.94541 0.88940 0.91958 0.92076 0.83828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.06 71.24 0.72 -0.36 16 2 C -0.04 -0.70 5.91 -19.69 -0.12 -0.82 16 3 C -0.14 -2.21 9.45 22.44 0.21 -2.00 16 4 C 0.11 2.47 6.78 42.68 0.29 2.76 16 5 C -0.11 -1.68 10.17 71.24 0.72 -0.96 16 6 N -0.48 -14.03 6.10 -173.08 -1.06 -15.09 16 7 C 0.07 2.09 6.49 41.91 0.27 2.36 16 8 C 0.57 21.13 4.97 86.88 0.43 21.56 16 9 O -0.57 -23.07 15.86 -3.76 -0.06 -23.13 16 10 N -0.57 -22.30 1.65 -821.18 -1.35 -23.66 16 11 C 0.07 2.69 5.50 86.49 0.48 3.17 16 12 C 0.15 7.33 2.46 45.11 0.11 7.44 16 13 H 0.07 3.82 5.92 -2.39 -0.01 3.81 16 14 C -0.11 -4.84 5.30 30.87 0.16 -4.68 16 15 C -0.13 -5.34 5.56 30.75 0.17 -5.17 16 16 C -0.12 -4.85 5.58 30.72 0.17 -4.68 16 17 C 0.15 6.55 3.60 44.95 0.16 6.71 16 18 H 0.08 3.30 8.01 -2.38 -0.02 3.28 16 19 C 0.10 4.14 5.86 86.33 0.51 4.64 16 20 N -0.60 -30.61 2.42 -646.54 -1.57 -32.17 16 21 C -0.35 -19.81 9.64 84.03 0.81 -18.99 16 22 H 0.05 2.83 7.95 -2.91 -0.02 2.81 16 23 C -0.07 -4.06 4.81 84.86 0.41 -3.65 16 24 N -0.95 -57.28 12.35 21.65 0.27 -57.02 16 25 Si 1.12 51.54 29.99 68.60 2.06 53.60 16 26 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 27 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 28 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 29 C -0.13 -3.27 9.33 22.61 0.21 -3.06 16 30 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.08 0.74 8.10 -2.39 -0.02 0.72 16 32 H 0.10 0.53 8.10 -2.38 -0.02 0.51 16 33 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 34 H 0.09 1.24 8.14 -2.39 -0.02 1.23 16 35 H 0.11 1.04 8.08 -2.39 -0.02 1.02 16 36 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.17 6.09 3.76 -78.82 -0.30 5.80 16 38 H 0.04 1.92 8.14 -2.39 -0.02 1.91 16 39 H 0.03 1.62 6.48 -2.38 -0.02 1.60 16 40 H 0.05 2.22 8.14 -2.39 -0.02 2.21 16 41 H 0.09 3.41 2.48 -3.41 -0.01 3.40 16 42 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 45 H 0.09 3.47 6.98 -2.39 -0.02 3.46 16 46 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 47 H 0.27 16.11 4.67 -92.71 -0.43 15.67 16 48 H 0.14 3.53 7.75 -2.91 -0.02 3.51 16 Total: -1.00 -72.02 360.78 5.02 -67.00 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 1.02 Total: 26.20 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 5.72 Total: 4.27 kcal Atomic # 7 Polarization: -124.22 SS G_CDS: -3.71 Total: -127.93 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.06 Total: -23.13 kcal Atomic # 14 Polarization: 51.54 SS G_CDS: 2.06 Total: 53.60 kcal Total: -72.02 5.02 -67.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039714313.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.267 kcal (2) G-P(sol) polarization free energy of solvation -72.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds