Wall clock time and date at job start Sat Apr 11 2020 02:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38601 * 120.32859 * 2 1 4 4 N 1.31491 * 120.90834 * 180.02562 * 3 2 1 5 5 C 1.32748 * 121.63928 * 0.02562 * 4 3 2 6 6 C 1.48165 * 119.72247 * 180.02562 * 5 4 3 7 7 O 1.21524 * 119.99841 * 186.84986 * 6 5 4 8 8 N 1.34773 * 119.99965 * 6.85570 * 6 5 4 9 9 C 1.46939 * 120.44247 * 10.60313 * 8 6 5 10 10 C 1.54067 * 108.29946 * 125.72361 * 9 8 6 11 11 H 1.09004 * 110.52419 * 172.87160 * 10 9 8 12 12 C 1.53370 * 108.83544 * 294.50826 * 10 9 8 13 13 C 1.53006 * 109.24925 * 60.25724 * 12 10 9 14 14 C 1.53008 * 109.79986 * 60.57968 * 13 12 10 15 15 C 1.53370 * 109.27637 * 299.43724 * 14 13 12 16 16 H 1.09004 * 110.59518 * 178.09754 * 15 14 13 17 17 C 1.46946 * 120.43910 * 190.87873 * 8 6 5 18 18 N 1.47571 * 107.98240 * 56.34002 * 15 14 13 19 19 C 1.36930 * 121.61401 * 122.28160 * 18 15 14 20 20 H 1.08008 * 119.99621 * 327.72401 * 19 18 15 21 21 C 1.38810 * 120.00652 * 147.72315 * 19 18 15 22 22 N 1.31622 * 119.99499 * 348.78603 * 21 19 18 23 23 Si 1.86791 * 120.00364 * 168.78465 * 21 19 18 24 24 H 1.48495 * 109.47212 * 0.02562 * 23 21 19 25 25 H 1.48509 * 109.47161 * 119.99827 * 23 21 19 26 26 H 1.48496 * 109.47617 * 239.99826 * 23 21 19 27 27 C 1.39273 * 120.55569 * 359.71296 * 5 4 3 28 28 C 1.38588 * 120.32279 * 180.02562 * 2 1 3 29 29 C 1.50697 * 120.75733 * 359.97438 * 28 2 1 30 30 H 1.09005 * 109.47041 * 269.97389 * 1 2 3 31 31 H 1.09003 * 109.46994 * 29.97401 * 1 2 3 32 32 H 1.09000 * 109.47535 * 149.97677 * 1 2 3 33 33 H 1.08004 * 119.55018 * 0.02562 * 3 2 1 34 34 H 1.09001 * 109.62213 * 245.48917 * 9 8 6 35 35 H 1.09000 * 109.62457 * 6.05085 * 9 8 6 36 36 H 1.09000 * 109.50699 * 300.32461 * 12 10 9 37 37 H 1.09004 * 109.54607 * 180.21204 * 12 10 9 38 38 H 1.09001 * 109.41954 * 300.47388 * 13 12 10 39 39 H 1.09005 * 109.36370 * 180.64566 * 13 12 10 40 40 H 1.09002 * 109.50434 * 179.49920 * 14 13 12 41 41 H 1.08995 * 109.53894 * 59.39858 * 14 13 12 42 42 H 1.09001 * 109.62896 * 353.96218 * 17 8 6 43 43 H 1.09001 * 109.63055 * 114.34878 * 17 8 6 44 44 H 0.96997 * 119.99996 * 180.02562 * 22 21 19 45 45 H 1.07997 * 120.47160 * 180.28584 * 27 5 4 46 46 H 1.09005 * 109.46599 * 89.99714 * 29 28 2 47 47 H 1.08995 * 109.47349 * 210.00471 * 29 28 2 48 48 H 1.08998 * 109.47280 * 330.00709 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1963 0.0000 4 7 3.5217 1.2096 -0.0005 5 6 4.2294 0.0866 -0.0015 6 6 5.7097 0.1511 -0.0015 7 8 6.3622 -0.8663 -0.1280 8 7 6.3324 1.3381 0.1389 9 6 5.5734 2.5362 0.5227 10 6 6.2404 3.1535 1.7668 11 1 5.7836 4.1131 2.0089 12 6 6.0982 2.1769 2.9408 13 6 6.7887 0.8583 2.5865 14 6 8.2755 1.1061 2.3239 15 6 8.4267 2.0790 1.1479 16 1 9.4786 2.2971 0.9634 17 6 7.7785 1.4524 -0.0957 18 7 7.6785 3.3083 1.4746 19 6 8.2893 4.5335 1.5051 20 1 9.3234 4.6140 1.8063 21 6 7.5796 5.6720 1.1489 22 7 6.4005 5.5596 0.5748 23 14 8.2977 7.3634 1.4842 24 1 9.6256 7.2177 2.1326 25 1 8.4508 8.0991 0.2033 26 1 7.3878 8.1183 2.3827 27 6 3.5923 -1.1519 0.0039 28 6 2.2066 -1.1963 -0.0005 29 6 1.4779 -2.5153 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3634 -0.8898 -0.5142 33 1 1.6648 2.1305 0.0004 34 1 5.5847 3.2548 -0.2968 35 1 4.5453 2.2592 0.7561 36 1 5.0415 1.9936 3.1358 37 1 6.5634 2.6043 3.8291 38 1 6.3282 0.4366 1.6931 39 1 6.6788 0.1587 3.4152 40 1 8.7644 0.1627 2.0807 41 1 8.7362 1.5360 3.2133 42 1 8.2007 0.4626 -0.2693 43 1 7.9596 2.0852 -0.9646 44 1 5.9046 6.3551 0.3255 45 1 4.1694 -2.0647 0.0077 46 1 1.3018 -2.8330 -1.0283 47 1 2.0813 -3.2638 0.5129 48 1 0.5233 -2.4031 0.5136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039790584.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:25:48 Heat of formation + Delta-G solvation = 62.469681 kcal Electronic energy + Delta-G solvation = -30202.433039 eV Core-core repulsion = 26452.288818 eV Total energy + Delta-G solvation = -3750.144221 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.04512 -39.71006 -37.49350 -34.90079 -33.59926 -32.78867 -32.45976 -31.69462 -30.11931 -28.65265 -27.59818 -26.47933 -25.33940 -23.74281 -22.83163 -22.41024 -21.33931 -21.04577 -19.50307 -18.26113 -17.41789 -16.82599 -15.90754 -15.38532 -15.32111 -15.02286 -14.72111 -14.49923 -14.37327 -13.92500 -13.43598 -13.29906 -13.16635 -13.12410 -13.02852 -12.94750 -12.71384 -12.52118 -12.35184 -12.24365 -12.00970 -11.80861 -11.61421 -11.13620 -10.94745 -10.88652 -10.68762 -10.29356 -10.05712 -9.99881 -9.92416 -9.78505 -9.50693 -9.47275 -9.36637 -8.95238 -8.75515 -8.29881 -7.64117 -6.43389 -5.78406 -3.25952 0.72715 1.19043 2.98888 3.36660 3.44851 3.46460 3.52745 3.95827 4.31462 4.48181 4.55355 4.66410 4.75165 4.82482 5.17329 5.26967 5.31340 5.35650 5.36883 5.38096 5.42272 5.59813 5.76685 5.78461 5.80212 5.82202 5.86664 5.93579 6.01530 6.12750 6.18376 6.32628 6.42569 6.47627 6.53609 6.55547 6.63452 6.74419 6.80548 6.86360 6.97240 7.03982 7.22070 7.35944 7.44987 7.65857 7.80890 7.84899 8.15344 8.46305 8.64267 9.20835 9.80322 10.45708 11.28923 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.016845 B = 0.004186 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.821223 B = 6687.675539 C = 7685.861243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.126 4.126 3 C 0.095 3.905 4 N -0.434 5.434 5 C 0.085 3.915 6 C 0.560 3.440 7 O -0.558 6.558 8 N -0.563 5.563 9 C 0.073 3.927 10 C 0.179 3.821 11 H 0.111 0.889 12 C -0.131 4.131 13 C -0.138 4.138 14 C -0.120 4.120 15 C 0.155 3.845 16 H 0.077 0.923 17 C 0.097 3.903 18 N -0.581 5.581 19 C -0.248 4.248 20 H 0.063 0.937 21 C 0.007 3.993 22 N -0.899 5.899 23 Si 0.903 3.097 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.290 1.290 27 C -0.113 4.113 28 C -0.055 4.055 29 C -0.115 4.115 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.162 0.838 34 H 0.082 0.918 35 H 0.126 0.874 36 H 0.039 0.961 37 H 0.050 0.950 38 H 0.085 0.915 39 H 0.029 0.971 40 H 0.046 0.954 41 H 0.053 0.947 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.253 0.747 45 H 0.145 0.855 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.052 -12.182 -0.703 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.128 4.128 3 C -0.064 4.064 4 N -0.145 5.145 5 C -0.052 4.052 6 C 0.347 3.653 7 O -0.438 6.438 8 N -0.292 5.292 9 C -0.049 4.049 10 C 0.071 3.929 11 H 0.128 0.872 12 C -0.171 4.171 13 C -0.176 4.176 14 C -0.159 4.159 15 C 0.047 3.953 16 H 0.095 0.905 17 C -0.027 4.027 18 N -0.302 5.302 19 C -0.377 4.377 20 H 0.081 0.919 21 C -0.192 4.192 22 N -0.543 5.543 23 Si 0.733 3.267 24 H -0.204 1.204 25 H -0.218 1.218 26 H -0.217 1.217 27 C -0.134 4.134 28 C -0.063 4.063 29 C -0.172 4.172 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.179 0.821 34 H 0.100 0.900 35 H 0.142 0.858 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.102 0.898 39 H 0.048 0.952 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.063 0.937 45 H 0.162 0.838 46 H 0.095 0.905 47 H 0.091 0.909 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.289 -11.717 -0.830 16.291 hybrid contribution -0.034 0.361 0.191 0.410 sum -11.323 -11.356 -0.640 16.049 Atomic orbital electron populations 1.20772 0.90191 1.03241 1.02692 1.20978 0.97524 0.93678 1.00628 1.22957 0.90001 0.97653 0.95769 1.67980 1.07643 1.28617 1.10305 1.21352 0.94764 0.89443 0.99691 1.17674 0.85678 0.84012 0.77910 1.90726 1.65787 1.34196 1.53112 1.48191 1.09229 1.08887 1.62885 1.23643 0.96945 0.84531 0.99812 1.21212 0.85059 0.96997 0.89585 0.87181 1.22114 0.97733 0.96800 1.00414 1.22074 0.96804 0.97255 1.01484 1.21902 0.96314 0.98229 0.99479 1.21214 0.95610 0.87636 0.90877 0.90520 1.22307 0.79887 1.00775 0.99721 1.44354 1.05034 1.01572 1.79205 1.19172 0.96860 0.83370 1.38322 0.91884 1.25124 0.97609 0.98265 0.98158 1.69925 1.13656 1.27793 1.42968 0.86212 0.78514 0.84525 0.77414 1.20394 1.21762 1.21681 1.21952 0.94016 0.99023 0.98429 1.20159 0.93252 0.95686 0.97196 1.20825 1.00294 0.93178 1.02871 0.90695 0.90917 0.91164 0.82104 0.89984 0.85797 0.94184 0.93103 0.89751 0.95238 0.93481 0.92842 0.90594 0.91592 0.93669 0.83753 0.90511 0.90878 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 9.27 36.00 0.33 -0.44 16 2 C -0.13 -1.33 5.91 -104.36 -0.62 -1.95 16 3 C 0.10 1.21 10.86 -17.56 -0.19 1.02 16 4 N -0.43 -7.09 6.12 -9.80 -0.06 -7.15 16 5 C 0.08 1.44 6.59 -83.01 -0.55 0.89 16 6 C 0.56 11.06 5.10 -12.18 -0.06 11.00 16 7 O -0.56 -11.78 15.59 5.34 0.08 -11.70 16 8 N -0.56 -11.62 1.64 -172.94 -0.28 -11.90 16 9 C 0.07 1.58 5.26 -3.25 -0.02 1.56 16 10 C 0.18 4.13 2.60 -66.60 -0.17 3.95 16 11 H 0.11 2.86 6.11 -51.93 -0.32 2.55 16 12 C -0.13 -2.73 5.59 -26.54 -0.15 -2.88 16 13 C -0.14 -2.77 5.55 -26.72 -0.15 -2.92 16 14 C -0.12 -2.38 5.58 -26.54 -0.15 -2.53 16 15 C 0.15 3.31 3.61 -66.84 -0.24 3.07 16 16 H 0.08 1.60 8.03 -51.93 -0.42 1.18 16 17 C 0.10 2.01 5.89 -3.49 -0.02 1.99 16 18 N -0.58 -14.15 2.52 -155.14 -0.39 -14.54 16 19 C -0.25 -6.58 9.72 -15.06 -0.15 -6.73 16 20 H 0.06 1.68 7.85 -52.48 -0.41 1.27 16 21 C 0.01 0.19 5.11 -17.43 -0.09 0.10 16 22 N -0.90 -24.47 10.48 55.49 0.58 -23.89 16 23 Si 0.90 21.23 29.57 -169.99 -5.03 16.20 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 C -0.11 -1.60 9.34 -39.05 -0.36 -1.96 16 28 C -0.06 -0.61 5.91 -104.35 -0.62 -1.23 16 29 C -0.12 -0.86 9.28 36.00 0.33 -0.53 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.07 0.40 6.80 -51.93 -0.35 0.05 16 33 H 0.16 1.64 8.06 -52.48 -0.42 1.22 16 34 H 0.08 2.03 7.57 -51.93 -0.39 1.63 16 35 H 0.13 2.50 4.08 -82.51 -0.34 2.17 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.08 1.74 2.39 -52.42 -0.13 1.61 16 39 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.08 1.50 7.00 -51.93 -0.36 1.14 16 43 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 45 H 0.14 1.96 7.66 -52.49 -0.40 1.56 16 46 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 48 H 0.07 0.44 6.81 -51.93 -0.35 0.09 16 LS Contribution 360.38 15.07 5.43 5.43 Total: -1.00 -30.14 360.38 -9.78 -39.92 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -7.25 Total: 5.21 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -2.86 Total: 2.43 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: -0.15 Total: -57.48 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.08 Total: -11.70 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.14 -9.78 -39.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039790584.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.386 kcal (2) G-P(sol) polarization free energy of solvation -30.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds