Wall clock time and date at job start Sat Apr 11 2020 02:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47601 * 2 1 4 4 C 1.52996 * 109.46905 * 297.91475 * 3 2 1 5 5 C 1.52993 * 109.47254 * 294.31662 * 4 3 2 6 6 C 1.53005 * 109.46883 * 57.91370 * 3 2 1 7 7 N 1.46499 * 109.47185 * 65.00073 * 6 3 2 8 8 C 1.46500 * 119.99946 * 270.00195 * 7 6 3 9 9 C 1.50705 * 109.46941 * 275.48028 * 8 7 6 10 10 H 1.08004 * 119.99760 * 0.02562 * 9 8 7 11 11 C 1.37874 * 119.99746 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00449 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99597 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47220 * 90.00108 * 13 11 9 15 15 H 1.48503 * 109.47080 * 209.99928 * 13 11 9 16 16 H 1.48500 * 109.47292 * 329.99560 * 13 11 9 17 17 C 1.34773 * 120.00005 * 89.99868 * 7 6 3 18 18 O 1.21594 * 119.99753 * 4.76866 * 17 7 6 19 19 C 1.47577 * 120.00386 * 184.77153 * 17 7 6 20 20 C 1.40087 * 120.36106 * 132.43194 * 19 17 7 21 21 N 1.31161 * 121.12067 * 180.02562 * 20 19 17 22 22 C 1.33367 * 121.67754 * 359.97438 * 21 20 19 23 23 C 1.41852 * 133.17084 * 179.97438 * 22 21 20 24 24 C 1.34452 * 107.95946 * 180.02562 * 23 22 21 25 25 N 1.36539 * 109.71574 * 359.97438 * 24 23 22 26 26 H 0.97002 * 125.60008 * 180.02562 * 25 24 23 27 27 C 1.37854 * 108.80658 * 0.02562 * 25 24 23 28 28 C 1.38722 * 133.57327 * 179.97438 * 27 25 24 29 29 H 1.09004 * 109.46804 * 304.11067 * 1 2 3 30 30 H 1.09005 * 109.47100 * 64.10579 * 1 2 3 31 31 H 1.08995 * 109.47538 * 184.11532 * 1 2 3 32 32 H 1.09002 * 109.47012 * 239.99721 * 2 1 3 33 33 H 1.09002 * 109.47313 * 120.00227 * 2 1 3 34 34 H 1.08996 * 109.47224 * 177.91452 * 3 2 1 35 35 H 1.09001 * 109.47615 * 54.32073 * 4 3 2 36 36 H 1.09003 * 109.47199 * 174.31425 * 4 3 2 37 37 H 1.08997 * 109.47361 * 65.48190 * 5 4 3 38 38 H 1.08999 * 109.47580 * 185.47939 * 5 4 3 39 39 H 1.08993 * 109.47460 * 305.48023 * 5 4 3 40 40 H 1.09001 * 109.46677 * 304.99805 * 6 3 2 41 41 H 1.08998 * 109.46762 * 185.00105 * 6 3 2 42 42 H 1.08992 * 109.47383 * 35.48143 * 8 7 6 43 43 H 1.09000 * 109.46916 * 155.48444 * 8 7 6 44 44 H 0.96998 * 120.00307 * 179.97438 * 12 11 9 45 45 H 1.07997 * 119.43819 * 0.04452 * 20 19 17 46 46 H 1.08005 * 126.02100 * 0.04189 * 23 22 21 47 47 H 1.08004 * 125.14586 * 180.26713 * 24 23 22 48 48 H 1.08004 * 120.90702 * 0.04432 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5735 2.1484 -1.2746 5 6 2.2389 1.4994 -2.4898 6 6 1.4877 2.1787 1.2222 7 7 2.0304 1.5757 2.4421 8 6 1.3200 0.4714 3.0919 9 6 0.2536 1.0260 4.0009 10 1 0.1182 2.0941 4.0857 11 6 -0.5492 0.1696 4.7242 12 7 -0.3847 -1.1310 4.6206 13 14 -1.8716 0.8570 5.8504 14 1 -3.1394 1.0062 5.0918 15 1 -2.0831 -0.0715 6.9899 16 1 -1.4436 2.1826 6.3650 17 6 3.1831 2.0368 2.9665 18 8 3.7274 3.0083 2.4782 19 6 3.7847 1.3627 4.1333 20 6 5.1487 1.0433 4.1410 21 7 5.6988 0.4439 5.1698 22 6 4.9891 0.1133 6.2495 23 6 5.3221 -0.5251 7.4717 24 6 4.2044 -0.6069 8.2146 25 7 3.1582 -0.0518 7.5354 26 1 2.2457 0.0122 7.8582 27 6 3.6114 0.4029 6.3155 28 6 2.9996 1.0367 5.2439 29 1 -0.3633 0.5763 0.8509 30 1 -0.3633 0.4488 -0.9245 31 1 -0.3634 -1.0249 0.0737 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.1294 1.4426 0.0374 35 1 0.4906 2.0604 -1.3631 36 1 1.8497 3.2018 -1.2285 37 1 1.8865 0.4730 -2.5921 38 1 1.9836 2.0622 -3.3877 39 1 3.3205 1.5005 -2.3556 40 1 0.4004 2.1022 1.2316 41 1 1.7777 3.2284 1.1757 42 1 0.8583 -0.1601 2.3330 43 1 2.0247 -0.1196 3.6769 44 1 -0.9493 -1.7334 5.1297 45 1 5.7577 1.2953 3.2855 46 1 6.3010 -0.8822 7.7556 47 1 4.1444 -1.0415 9.2016 48 1 1.9457 1.2717 5.2664 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879110378.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:25:38 Heat of formation + Delta-G solvation = 5.436952 kcal Electronic energy + Delta-G solvation = -29361.520258 eV Core-core repulsion = 25608.902912 eV Total energy + Delta-G solvation = -3752.617346 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.65760 -41.06328 -38.88590 -38.11600 -36.37955 -34.44479 -33.81104 -32.04973 -31.13283 -30.68861 -29.95093 -28.44035 -25.76947 -25.12807 -24.68014 -24.30407 -23.46926 -21.70629 -20.70302 -19.79879 -18.94423 -18.70613 -18.19894 -17.43240 -17.08142 -16.78675 -16.55793 -16.21893 -16.09619 -15.81522 -15.24250 -15.06832 -14.52835 -14.41424 -14.33771 -13.97066 -13.89433 -13.79287 -13.67954 -13.41412 -13.35413 -13.05786 -12.99491 -12.78080 -12.60548 -12.51522 -12.36909 -12.12519 -12.01888 -11.71383 -11.44811 -11.30686 -11.20640 -11.16315 -11.06945 -10.56271 -10.27564 -9.48949 -9.36262 -8.97305 -8.20735 -6.34991 -0.20862 0.33507 1.36057 1.42144 1.48680 1.58406 1.90804 2.12818 2.28053 2.43497 2.96150 3.06037 3.35737 3.65645 3.87002 3.93048 3.96556 4.04473 4.06729 4.20418 4.35464 4.43968 4.45753 4.54104 4.61581 4.63562 4.73306 4.75292 4.87706 4.91179 4.95009 5.00397 5.08904 5.10792 5.15237 5.17303 5.22566 5.35293 5.39341 5.44533 5.45753 5.50162 5.57149 5.63258 5.71068 5.86387 5.96185 6.06240 6.52727 6.56537 6.78797 7.00603 7.23421 7.36876 8.83057 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.009840 B = 0.005268 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.897808 B = 5313.574686 C = 7340.599356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.091 4.091 4 C -0.113 4.113 5 C -0.146 4.146 6 C 0.118 3.882 7 N -0.582 5.582 8 C 0.240 3.760 9 C -0.544 4.544 10 H 0.052 0.948 11 C 0.037 3.963 12 N -0.905 5.905 13 Si 0.942 3.058 14 H -0.279 1.279 15 H -0.276 1.276 16 H -0.272 1.272 17 C 0.563 3.437 18 O -0.588 6.588 19 C -0.194 4.194 20 C 0.136 3.864 21 N -0.483 5.483 22 C 0.084 3.916 23 C -0.229 4.229 24 C 0.109 3.891 25 N -0.573 5.573 26 H 0.431 0.569 27 C 0.007 3.993 28 C -0.029 4.029 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.044 0.956 43 H 0.022 0.978 44 H 0.268 0.732 45 H 0.166 0.834 46 H 0.171 0.829 47 H 0.233 0.767 48 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.784 -0.635 0.328 2.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C -0.111 4.111 4 C -0.151 4.151 5 C -0.203 4.203 6 C -0.004 4.004 7 N -0.310 5.310 8 C 0.120 3.880 9 C -0.583 4.583 10 H 0.070 0.930 11 C -0.165 4.165 12 N -0.543 5.543 13 Si 0.768 3.232 14 H -0.205 1.205 15 H -0.201 1.201 16 H -0.196 1.196 17 C 0.352 3.648 18 O -0.471 6.471 19 C -0.201 4.201 20 C -0.034 4.034 21 N -0.191 5.191 22 C -0.046 4.046 23 C -0.254 4.254 24 C -0.022 4.022 25 N -0.175 5.175 26 H 0.270 0.730 27 C -0.102 4.102 28 C -0.057 4.057 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.062 0.938 43 H 0.040 0.960 44 H 0.077 0.923 45 H 0.183 0.817 46 H 0.188 0.812 47 H 0.249 0.751 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.710 -0.574 0.250 3.763 hybrid contribution -2.125 0.431 0.688 2.274 sum 1.586 -0.143 0.938 1.848 Atomic orbital electron populations 1.21830 0.95431 1.01296 1.01939 1.21524 0.96554 0.95860 1.01147 1.21468 0.99278 0.95691 0.94645 1.21504 1.01307 0.99195 0.93116 1.21748 1.00223 1.01084 0.97272 1.21607 0.98974 0.96779 0.83059 1.48090 1.21583 1.35455 1.25893 1.19492 0.91060 0.84533 0.92943 1.21548 1.17583 0.93073 1.26074 0.93010 1.25475 0.98446 0.94783 0.97835 1.70026 1.39807 1.02643 1.41807 0.85800 0.79965 0.78446 0.79001 1.20458 1.20088 1.19635 1.18178 0.80900 0.82955 0.82797 1.90659 1.64063 1.28076 1.64349 1.20501 0.96101 1.07181 0.96336 1.22634 0.90654 0.93738 0.96334 1.67210 1.38513 1.13239 1.00153 1.19791 0.89355 1.00303 0.95193 1.20840 1.01292 1.10779 0.92535 1.22860 0.84407 0.95766 0.99199 1.41923 1.12395 1.50239 1.12951 0.72960 1.19109 0.95729 1.05102 0.90278 1.21622 1.01679 0.92542 0.89856 0.93422 0.90887 0.93629 0.90801 0.94238 0.92997 0.90665 0.92080 0.92250 0.91457 0.93395 0.89799 0.91674 0.93800 0.95980 0.92269 0.81676 0.81182 0.75052 0.82384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 8.44 71.98 0.61 -3.90 16 2 C -0.11 -3.55 4.91 30.59 0.15 -3.40 16 3 C -0.09 -2.87 2.36 -10.79 -0.03 -2.89 16 4 C -0.11 -2.79 5.23 30.59 0.16 -2.63 16 5 C -0.15 -3.05 9.55 71.98 0.69 -2.37 16 6 C 0.12 4.37 4.69 86.38 0.41 4.78 16 7 N -0.58 -24.86 2.29 -829.86 -1.90 -26.76 16 8 C 0.24 11.11 3.84 85.63 0.33 11.44 16 9 C -0.54 -26.33 6.80 25.60 0.17 -26.15 16 10 H 0.05 2.59 7.81 -2.91 -0.02 2.56 16 11 C 0.04 1.77 5.46 84.65 0.46 2.23 16 12 N -0.90 -45.79 13.29 21.45 0.28 -45.50 16 13 Si 0.94 38.14 29.54 68.60 2.03 40.17 16 14 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 15 H -0.28 -10.73 7.11 99.48 0.71 -10.02 16 16 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 17 C 0.56 25.27 7.26 86.71 0.63 25.90 16 18 O -0.59 -28.11 16.57 -4.01 -0.07 -28.18 16 19 C -0.19 -8.39 4.98 -19.97 -0.10 -8.49 16 20 C 0.14 5.48 10.85 85.24 0.92 6.41 16 21 N -0.48 -19.15 10.40 -187.78 -1.95 -21.10 16 22 C 0.08 3.10 7.32 40.46 0.30 3.40 16 23 C -0.23 -6.19 10.84 22.30 0.24 -5.95 16 24 C 0.11 2.28 11.82 83.09 0.98 3.26 16 25 N -0.57 -15.89 6.14 -187.65 -1.15 -17.04 16 26 H 0.43 10.26 8.96 -92.71 -0.83 9.43 16 27 C 0.01 0.27 7.27 38.97 0.28 0.55 16 28 C -0.03 -1.24 7.64 22.78 0.17 -1.06 16 29 H 0.05 1.68 5.25 -2.39 -0.01 1.67 16 30 H 0.07 1.82 6.57 -2.38 -0.02 1.80 16 31 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 2.01 6.62 -2.39 -0.02 1.99 16 33 H 0.04 1.47 5.97 -2.39 -0.01 1.46 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.07 1.72 6.30 -2.39 -0.02 1.70 16 36 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.06 1.19 6.81 -2.39 -0.02 1.18 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 3.08 5.96 -2.39 -0.01 3.06 16 41 H 0.06 2.48 7.36 -2.39 -0.02 2.46 16 42 H 0.04 2.10 4.39 -2.39 -0.01 2.09 16 43 H 0.02 1.12 5.41 -2.39 -0.01 1.11 16 44 H 0.27 12.90 8.31 -92.71 -0.77 12.13 16 45 H 0.17 6.07 8.06 -2.91 -0.02 6.05 16 46 H 0.17 3.70 8.06 -2.91 -0.02 3.67 16 47 H 0.23 2.04 8.06 -2.91 -0.02 2.02 16 48 H 0.16 7.22 4.72 -2.91 -0.01 7.20 16 Total: -1.00 -63.58 374.14 3.80 -59.79 By element: Atomic # 1 Polarization: 37.34 SS G_CDS: 0.17 Total: 37.51 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 6.38 Total: 1.12 kcal Atomic # 7 Polarization: -105.69 SS G_CDS: -4.72 Total: -110.41 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.07 Total: -28.18 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.17 kcal Total: -63.58 3.80 -59.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879110378.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.223 kcal (2) G-P(sol) polarization free energy of solvation -63.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds