Wall clock time and date at job start Sat Apr 11 2020 02:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47266 * 2 1 4 4 C 1.38638 * 120.47405 * 98.69892 * 3 2 1 5 5 C 1.38581 * 118.48657 * 180.02562 * 4 3 2 6 6 C 1.38605 * 119.35649 * 0.02562 * 5 4 3 7 7 N 1.31489 * 120.89612 * 359.97438 * 6 5 4 8 8 C 1.32746 * 121.64897 * 359.70936 * 7 6 5 9 9 C 1.48171 * 119.72735 * 180.28636 * 8 7 6 10 10 O 1.21510 * 119.99923 * 185.74183 * 9 8 7 11 11 N 1.34776 * 119.99782 * 5.74326 * 9 8 7 12 12 C 1.46503 * 119.99499 * 180.02562 * 11 9 8 13 13 H 1.08999 * 112.88725 * 23.65461 * 12 11 9 14 14 C 1.53950 * 113.66092 * 252.18569 * 12 11 9 15 15 C 1.53951 * 87.29758 * 220.80139 * 14 12 11 16 16 H 1.09004 * 113.65858 * 270.26204 * 15 14 12 17 17 N 1.46492 * 113.66675 * 139.20581 * 15 14 12 18 18 C 1.36932 * 120.00181 * 107.81095 * 17 15 14 19 19 H 1.08004 * 120.00273 * 0.02562 * 18 17 15 20 20 C 1.38814 * 120.00399 * 180.02562 * 18 17 15 21 21 N 1.31613 * 120.00279 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99875 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46845 * 89.99719 * 22 20 18 24 24 H 1.48490 * 109.47507 * 209.99975 * 22 20 18 25 25 H 1.48502 * 109.46927 * 330.00379 * 22 20 18 26 26 C 1.52909 * 113.65696 * 155.00266 * 12 11 9 27 27 C 1.52903 * 121.14131 * 13.64704 * 26 12 11 28 28 C 1.53945 * 86.78432 * 209.37960 * 27 26 12 29 29 C 1.52911 * 121.13536 * 265.08308 * 26 12 11 30 30 H 1.08998 * 109.47088 * 300.00156 * 1 2 3 31 31 H 1.09004 * 109.46629 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46780 * 60.00414 * 1 2 3 33 33 H 1.09002 * 109.47335 * 119.99166 * 2 1 3 34 34 H 1.09001 * 109.47543 * 239.99626 * 2 1 3 35 35 H 1.07999 * 120.75405 * 359.97438 * 4 3 2 36 36 H 1.08003 * 120.31717 * 179.97438 * 5 4 3 37 37 H 1.07993 * 119.54940 * 180.02562 * 6 5 4 38 38 H 0.96999 * 120.00163 * 359.97438 * 11 9 8 39 39 H 1.09006 * 113.58174 * 335.39927 * 14 12 11 40 40 H 1.08992 * 113.58089 * 106.19405 * 14 12 11 41 41 H 0.96997 * 119.99919 * 287.81254 * 17 15 14 42 42 H 0.97000 * 120.00192 * 180.02562 * 21 20 18 43 43 H 1.08997 * 113.66366 * 323.85783 * 27 26 12 44 44 H 1.09005 * 113.66398 * 94.90838 * 27 26 12 45 45 H 1.08996 * 113.58643 * 270.12955 * 28 27 26 46 46 H 1.09008 * 113.64894 * 139.34674 * 28 27 26 47 47 H 1.08995 * 113.66496 * 265.09303 * 29 26 12 48 48 H 1.08997 * 113.66363 * 36.06127 * 29 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4371 2.0234 1.1811 5 6 2.8914 3.3318 1.1337 6 6 2.9273 3.9949 -0.0829 7 7 2.5373 3.3993 -1.1883 8 6 2.1014 2.1454 -1.1874 9 6 1.6782 1.5137 -2.4591 10 8 1.1812 0.4050 -2.4508 11 7 1.8447 2.1690 -3.6251 12 6 1.4257 1.5445 -4.8824 13 1 0.6559 0.7856 -4.7430 14 6 2.6001 1.0818 -5.7638 15 6 1.8076 1.6130 -6.9720 16 1 1.1458 0.8724 -7.4209 17 7 2.6363 2.3108 -7.9580 18 6 2.9043 1.7235 -9.1656 19 1 2.5044 0.7460 -9.3913 20 6 3.6900 2.3845 -10.0998 21 7 3.9472 1.8202 -11.2607 22 14 4.3812 4.0755 -9.7099 23 1 5.7099 3.9300 -9.0629 24 1 4.5250 4.8534 -10.9665 25 1 3.4581 4.7874 -8.7899 26 6 1.1037 2.5494 -5.9891 27 6 1.5110 4.0181 -5.8666 28 6 0.2840 4.3411 -6.7384 29 6 -0.3296 3.0218 -6.2355 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5137 0.8901 34 1 1.8934 -0.5139 -0.8899 35 1 2.3984 1.4857 2.1169 36 1 3.2136 3.8301 2.0361 37 1 3.2812 5.0144 -0.1235 38 1 2.2411 3.0542 -3.6316 39 1 3.5263 1.6253 -5.5768 40 1 2.7380 0.0006 -5.7740 41 1 2.9952 3.1889 -7.7555 42 1 4.4965 2.2819 -11.9133 43 1 1.4412 4.4082 -4.8512 44 1 2.4619 4.2499 -6.3464 45 1 0.4970 4.3434 -7.8074 46 1 -0.2617 5.2273 -6.4142 47 1 -0.8490 2.4577 -7.0101 48 1 -0.9172 3.1304 -5.3240 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078666708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:26:14 Heat of formation + Delta-G solvation = 58.764275 kcal Electronic energy + Delta-G solvation = -28536.023217 eV Core-core repulsion = 24785.718318 eV Total energy + Delta-G solvation = -3750.304899 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.13686 -40.39122 -38.59830 -35.32308 -34.75882 -33.98332 -32.79215 -32.09585 -30.50845 -29.91515 -25.70583 -25.58478 -24.44045 -24.22601 -24.17645 -22.16354 -21.46850 -20.57795 -20.50148 -18.56384 -18.18052 -17.10242 -16.90542 -16.14913 -15.85079 -15.61149 -15.22659 -15.02847 -14.71698 -14.37631 -14.06961 -13.92290 -13.66027 -13.57539 -13.09465 -12.96928 -12.69092 -12.59886 -12.28312 -12.18683 -11.96320 -11.79119 -11.61209 -11.49833 -11.17719 -11.02465 -10.83251 -10.77655 -10.23398 -10.18780 -10.12573 -9.97733 -9.95545 -9.85370 -9.55826 -9.45713 -9.30640 -8.88064 -8.65147 -7.27642 -5.79275 -3.14691 0.39691 0.88007 2.64747 3.11986 3.34680 3.37619 3.43532 3.61325 3.94442 4.41710 4.43806 4.56366 4.59720 4.62560 4.71131 4.83603 4.95858 5.01238 5.12860 5.13949 5.16335 5.23573 5.31330 5.35954 5.53856 5.55354 5.63555 5.68828 5.75160 5.80935 5.85773 5.88527 5.90384 5.97656 6.08045 6.15484 6.22034 6.22655 6.29094 6.33039 6.34305 6.52548 6.57618 6.73911 6.80832 6.95670 7.37742 7.68884 7.97818 8.22351 8.40564 9.18185 9.90471 10.10411 11.38978 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.017483 B = 0.003045 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.156026 B = 9192.917494 C = 9559.563376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 C -0.070 4.070 4 C -0.086 4.086 5 C -0.149 4.149 6 C 0.090 3.910 7 N -0.456 5.456 8 C 0.077 3.923 9 C 0.566 3.434 10 O -0.527 6.527 11 N -0.691 5.691 12 C 0.130 3.870 13 H 0.114 0.886 14 C -0.173 4.173 15 C 0.200 3.800 16 H 0.091 0.909 17 N -0.730 5.730 18 C -0.246 4.246 19 H 0.092 0.908 20 C 0.007 3.993 21 N -0.932 5.932 22 Si 0.879 3.121 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.275 1.275 26 C -0.123 4.123 27 C -0.119 4.119 28 C -0.133 4.133 29 C -0.123 4.123 30 H 0.042 0.958 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.162 0.838 38 H 0.408 0.592 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.364 0.636 42 H 0.260 0.740 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.088 0.912 46 H 0.059 0.941 47 H 0.070 0.930 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.730 3.529 26.940 27.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.124 4.124 3 C -0.073 4.073 4 C -0.112 4.112 5 C -0.169 4.169 6 C -0.070 4.070 7 N -0.166 5.166 8 C -0.061 4.061 9 C 0.351 3.649 10 O -0.404 6.404 11 N -0.340 5.340 12 C 0.025 3.975 13 H 0.132 0.868 14 C -0.215 4.215 15 C 0.088 3.912 16 H 0.109 0.891 17 N -0.371 5.371 18 C -0.376 4.376 19 H 0.110 0.890 20 C -0.189 4.189 21 N -0.580 5.580 22 Si 0.710 3.290 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.202 1.202 26 C -0.125 4.125 27 C -0.157 4.157 28 C -0.170 4.170 29 C -0.161 4.161 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.123 0.877 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.179 0.821 38 H 0.245 0.755 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.198 0.802 42 H 0.070 0.930 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.106 0.894 46 H 0.077 0.923 47 H 0.089 0.911 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.049 3.028 25.835 26.706 hybrid contribution 0.955 1.418 1.166 2.070 sum -5.095 4.447 27.001 27.835 Atomic orbital electron populations 1.21613 0.93999 1.01986 1.01539 1.20748 0.97079 0.90794 1.03814 1.20990 0.95863 0.98072 0.92409 1.21560 0.96625 0.94911 0.98088 1.22364 0.99289 0.95411 0.99834 1.22778 0.96445 1.00228 0.87561 1.67553 1.08364 1.09225 1.31498 1.21132 1.00070 0.90869 0.94025 1.17872 0.78946 0.85108 0.83014 1.90727 1.44312 1.18872 1.86507 1.45865 1.61446 1.21090 1.05621 1.22353 0.98602 0.96235 0.80298 0.86771 1.24245 0.97934 1.01288 0.98060 1.21037 0.91241 0.92283 0.86688 0.89140 1.42687 1.59431 1.19381 1.15552 1.19137 1.26199 1.02088 0.90188 0.89021 1.24663 1.00213 0.97992 0.96050 1.69693 1.42750 1.38492 1.07022 0.86631 0.79375 0.85733 0.77300 1.21076 1.21687 1.20150 1.23641 0.97089 0.94637 0.97180 1.22470 0.99207 0.94424 0.99588 1.22750 0.96700 0.96837 1.00718 1.22680 0.95448 0.97354 1.00616 0.93908 0.92287 0.91604 0.91851 0.87732 0.84256 0.84312 0.82113 0.75490 0.90271 0.91543 0.80203 0.93024 0.90493 0.91175 0.89364 0.92271 0.91140 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 9.42 37.16 0.35 -1.00 16 2 C -0.09 -0.88 5.34 -27.89 -0.15 -1.03 16 3 C -0.07 -0.74 5.18 -104.09 -0.54 -1.28 16 4 C -0.09 -0.67 9.82 -39.31 -0.39 -1.06 16 5 C -0.15 -1.02 10.11 -39.32 -0.40 -1.42 16 6 C 0.09 0.76 11.18 -17.56 -0.20 0.56 16 7 N -0.46 -5.23 9.56 -9.80 -0.09 -5.32 16 8 C 0.08 0.96 6.75 -83.01 -0.56 0.40 16 9 C 0.57 7.98 7.68 -12.18 -0.09 7.89 16 10 O -0.53 -8.16 11.15 5.36 0.06 -8.10 16 11 N -0.69 -9.52 5.24 -54.21 -0.28 -9.80 16 12 C 0.13 1.93 4.12 -67.48 -0.28 1.65 16 13 H 0.11 1.73 7.46 -51.93 -0.39 1.35 16 14 C -0.17 -2.95 7.68 -25.75 -0.20 -3.15 16 15 C 0.20 3.73 4.36 -67.48 -0.29 3.44 16 16 H 0.09 1.73 8.10 -51.93 -0.42 1.30 16 17 N -0.73 -16.65 5.13 -52.99 -0.27 -16.93 16 18 C -0.25 -6.79 10.45 -15.06 -0.16 -6.94 16 19 H 0.09 2.71 8.06 -52.48 -0.42 2.28 16 20 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 21 N -0.93 -29.04 13.97 55.49 0.78 -28.26 16 22 Si 0.88 21.79 27.74 -169.99 -4.71 17.08 16 23 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 26 C -0.12 -1.88 1.06 -154.71 -0.16 -2.05 16 27 C -0.12 -1.76 6.78 -26.29 -0.18 -1.93 16 28 C -0.13 -1.94 8.08 -25.75 -0.21 -2.15 16 29 C -0.12 -1.74 7.84 -26.28 -0.21 -1.94 16 30 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.80 6.55 -51.93 -0.34 0.46 16 33 H 0.06 0.50 8.04 -51.93 -0.42 0.09 16 34 H 0.10 1.29 5.97 -51.93 -0.31 0.98 16 35 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.14 0.52 8.06 -52.48 -0.42 0.09 16 37 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.41 5.37 6.38 -40.82 -0.26 5.11 16 39 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.36 8.17 3.78 -40.82 -0.15 8.02 16 42 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 43 H 0.08 0.99 7.03 -51.93 -0.36 0.62 16 44 H 0.07 1.15 6.42 -51.93 -0.33 0.82 16 45 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 46 H 0.06 0.76 8.14 -51.92 -0.42 0.33 16 47 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 380.28 15.07 5.73 5.73 Total: -1.00 -31.70 380.28 -9.78 -41.48 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -7.23 Total: 14.04 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -3.75 Total: -9.92 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: 0.13 Total: -60.31 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.06 Total: -8.10 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.71 Total: 17.08 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.70 -9.78 -41.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078666708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.245 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds