Wall clock time and date at job start Sat Apr 11 2020 02:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47266 * 2 1 4 4 C 1.38638 * 120.47405 * 98.69892 * 3 2 1 5 5 C 1.38581 * 118.48657 * 180.02562 * 4 3 2 6 6 C 1.38605 * 119.35649 * 0.02562 * 5 4 3 7 7 N 1.31489 * 120.89612 * 359.97438 * 6 5 4 8 8 C 1.32746 * 121.64897 * 359.70936 * 7 6 5 9 9 C 1.48171 * 119.72735 * 180.28636 * 8 7 6 10 10 O 1.21510 * 119.99923 * 185.74183 * 9 8 7 11 11 N 1.34776 * 119.99782 * 5.74326 * 9 8 7 12 12 C 1.46503 * 119.99499 * 180.02562 * 11 9 8 13 13 H 1.08999 * 112.88725 * 23.65461 * 12 11 9 14 14 C 1.53950 * 113.66092 * 252.18569 * 12 11 9 15 15 C 1.53951 * 87.29758 * 220.80139 * 14 12 11 16 16 H 1.09004 * 113.65858 * 270.26204 * 15 14 12 17 17 N 1.46492 * 113.66675 * 139.20581 * 15 14 12 18 18 C 1.36932 * 120.00181 * 107.81095 * 17 15 14 19 19 H 1.08004 * 120.00273 * 0.02562 * 18 17 15 20 20 C 1.38814 * 120.00399 * 180.02562 * 18 17 15 21 21 N 1.31613 * 120.00279 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99875 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46845 * 89.99719 * 22 20 18 24 24 H 1.48490 * 109.47507 * 209.99975 * 22 20 18 25 25 H 1.48502 * 109.46927 * 330.00379 * 22 20 18 26 26 C 1.52909 * 113.65696 * 155.00266 * 12 11 9 27 27 C 1.52903 * 121.14131 * 13.64704 * 26 12 11 28 28 C 1.53945 * 86.78432 * 209.37960 * 27 26 12 29 29 C 1.52911 * 121.13536 * 265.08308 * 26 12 11 30 30 H 1.08998 * 109.47088 * 300.00156 * 1 2 3 31 31 H 1.09004 * 109.46629 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46780 * 60.00414 * 1 2 3 33 33 H 1.09002 * 109.47335 * 119.99166 * 2 1 3 34 34 H 1.09001 * 109.47543 * 239.99626 * 2 1 3 35 35 H 1.07999 * 120.75405 * 359.97438 * 4 3 2 36 36 H 1.08003 * 120.31717 * 179.97438 * 5 4 3 37 37 H 1.07993 * 119.54940 * 180.02562 * 6 5 4 38 38 H 0.96999 * 120.00163 * 359.97438 * 11 9 8 39 39 H 1.09006 * 113.58174 * 335.39927 * 14 12 11 40 40 H 1.08992 * 113.58089 * 106.19405 * 14 12 11 41 41 H 0.96997 * 119.99919 * 287.81254 * 17 15 14 42 42 H 0.97000 * 120.00192 * 180.02562 * 21 20 18 43 43 H 1.08997 * 113.66366 * 323.85783 * 27 26 12 44 44 H 1.09005 * 113.66398 * 94.90838 * 27 26 12 45 45 H 1.08996 * 113.58643 * 270.12955 * 28 27 26 46 46 H 1.09008 * 113.64894 * 139.34674 * 28 27 26 47 47 H 1.08995 * 113.66496 * 265.09303 * 29 26 12 48 48 H 1.08997 * 113.66363 * 36.06127 * 29 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4371 2.0234 1.1811 5 6 2.8914 3.3318 1.1337 6 6 2.9273 3.9949 -0.0829 7 7 2.5373 3.3993 -1.1883 8 6 2.1014 2.1454 -1.1874 9 6 1.6782 1.5137 -2.4591 10 8 1.1812 0.4050 -2.4508 11 7 1.8447 2.1690 -3.6251 12 6 1.4257 1.5445 -4.8824 13 1 0.6559 0.7856 -4.7430 14 6 2.6001 1.0818 -5.7638 15 6 1.8076 1.6130 -6.9720 16 1 1.1458 0.8724 -7.4209 17 7 2.6363 2.3108 -7.9580 18 6 2.9043 1.7235 -9.1656 19 1 2.5044 0.7460 -9.3913 20 6 3.6900 2.3845 -10.0998 21 7 3.9472 1.8202 -11.2607 22 14 4.3812 4.0755 -9.7099 23 1 5.7099 3.9300 -9.0629 24 1 4.5250 4.8534 -10.9665 25 1 3.4581 4.7874 -8.7899 26 6 1.1037 2.5494 -5.9891 27 6 1.5110 4.0181 -5.8666 28 6 0.2840 4.3411 -6.7384 29 6 -0.3296 3.0218 -6.2355 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5137 0.8901 34 1 1.8934 -0.5139 -0.8899 35 1 2.3984 1.4857 2.1169 36 1 3.2136 3.8301 2.0361 37 1 3.2812 5.0144 -0.1235 38 1 2.2411 3.0542 -3.6316 39 1 3.5263 1.6253 -5.5768 40 1 2.7380 0.0006 -5.7740 41 1 2.9952 3.1889 -7.7555 42 1 4.4965 2.2819 -11.9133 43 1 1.4412 4.4082 -4.8512 44 1 2.4619 4.2499 -6.3464 45 1 0.4970 4.3434 -7.8074 46 1 -0.2617 5.2273 -6.4142 47 1 -0.8490 2.4577 -7.0101 48 1 -0.9172 3.1304 -5.3240 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078666708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:26:13 Heat of formation + Delta-G solvation = 39.056777 kcal Electronic energy + Delta-G solvation = -28536.877798 eV Core-core repulsion = 24785.718318 eV Total energy + Delta-G solvation = -3751.159481 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.15127 -41.44247 -39.60387 -36.41871 -36.17029 -35.25802 -34.07191 -33.13616 -32.25549 -30.73212 -26.93735 -26.79460 -25.69844 -25.44752 -25.09714 -23.56853 -22.32321 -21.83292 -21.66498 -20.21802 -19.38399 -18.41098 -17.89130 -17.21603 -16.73270 -16.63114 -16.47461 -16.36716 -16.04147 -15.62341 -15.21897 -14.87721 -14.77957 -14.58153 -14.34561 -14.10605 -13.86351 -13.70983 -13.67972 -13.49326 -13.21380 -13.00090 -12.97207 -12.77666 -12.47383 -12.32149 -12.21720 -12.03739 -11.92098 -11.85061 -11.37123 -11.24100 -11.10667 -10.95287 -10.78514 -10.76953 -10.37581 -10.09376 -9.78515 -9.26887 -8.02786 -5.35463 -0.32404 0.25727 1.35406 1.38701 1.45828 1.74008 2.09219 2.47090 2.85681 3.16669 3.26573 3.42522 3.49269 3.67959 3.72346 3.79872 3.84560 3.89422 3.95861 3.99431 4.05652 4.15836 4.40542 4.44800 4.51606 4.54812 4.56609 4.59844 4.69985 4.73349 4.81789 4.85714 4.95620 5.03423 5.05347 5.06875 5.12082 5.13122 5.13667 5.23449 5.39288 5.44953 5.46385 5.56730 5.64378 5.69378 5.78202 6.22200 6.46180 6.83435 7.07159 7.18403 7.83257 8.03614 9.18919 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.017483 B = 0.003045 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.156026 B = 9192.917494 C = 9559.563376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.085 4.085 3 C -0.082 4.082 4 C -0.085 4.085 5 C -0.131 4.131 6 C 0.081 3.919 7 N -0.478 5.478 8 C 0.047 3.953 9 C 0.561 3.439 10 O -0.549 6.549 11 N -0.688 5.688 12 C 0.149 3.851 13 H 0.111 0.889 14 C -0.169 4.169 15 C 0.181 3.819 16 H 0.079 0.921 17 N -0.731 5.731 18 C -0.230 4.230 19 H 0.058 0.942 20 C -0.062 4.062 21 N -0.984 5.984 22 Si 0.947 3.053 23 H -0.281 1.281 24 H -0.296 1.296 25 H -0.248 1.248 26 C -0.115 4.115 27 C -0.114 4.114 28 C -0.132 4.132 29 C -0.116 4.116 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.170 0.830 36 H 0.179 0.821 37 H 0.189 0.811 38 H 0.413 0.587 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.368 0.632 42 H 0.257 0.743 43 H 0.103 0.897 44 H 0.054 0.946 45 H 0.061 0.939 46 H 0.085 0.915 47 H 0.063 0.937 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.852 6.019 31.370 32.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.122 4.122 3 C -0.085 4.085 4 C -0.111 4.111 5 C -0.151 4.151 6 C -0.080 4.080 7 N -0.189 5.189 8 C -0.090 4.090 9 C 0.347 3.653 10 O -0.427 6.427 11 N -0.338 5.338 12 C 0.043 3.957 13 H 0.129 0.871 14 C -0.211 4.211 15 C 0.071 3.929 16 H 0.097 0.903 17 N -0.373 5.373 18 C -0.361 4.361 19 H 0.076 0.924 20 C -0.253 4.253 21 N -0.635 5.635 22 Si 0.774 3.226 23 H -0.207 1.207 24 H -0.222 1.222 25 H -0.172 1.172 26 C -0.117 4.117 27 C -0.152 4.152 28 C -0.169 4.169 29 C -0.153 4.153 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.188 0.812 36 H 0.196 0.804 37 H 0.206 0.794 38 H 0.250 0.750 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.203 0.797 42 H 0.066 0.934 43 H 0.121 0.879 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.103 0.897 47 H 0.082 0.918 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.205 5.517 30.331 31.447 hybrid contribution 0.971 0.558 -0.078 1.122 sum -5.234 6.075 30.253 31.298 Atomic orbital electron populations 1.21553 0.94149 1.02014 1.00938 1.20683 0.96948 0.91042 1.03556 1.21125 0.96343 0.98046 0.92969 1.21951 0.95504 0.95521 0.98115 1.22815 0.96836 0.94801 1.00639 1.23387 0.95697 1.01415 0.87475 1.67486 1.09196 1.08937 1.33269 1.20877 1.02701 0.91921 0.93493 1.18302 0.78325 0.84884 0.83753 1.90718 1.45164 1.19832 1.86996 1.45742 1.61729 1.21210 1.05110 1.21985 0.97017 0.95855 0.80811 0.87081 1.24109 0.98408 1.00760 0.97827 1.21263 0.91591 0.93374 0.86656 0.90287 1.42597 1.60295 1.19649 1.14749 1.19098 1.24579 1.00731 0.91712 0.92413 1.25447 1.01441 1.02446 0.95972 1.69877 1.44506 1.40578 1.08494 0.85526 0.78992 0.80761 0.77273 1.20705 1.22237 1.17227 1.23410 0.98147 0.94845 0.95281 1.22519 0.98437 0.93318 1.00913 1.22701 0.96957 0.98136 0.99147 1.22688 0.94530 0.96776 1.01346 0.92253 0.91976 0.94282 0.89381 0.90627 0.81217 0.80366 0.79411 0.74970 0.90816 0.92237 0.79709 0.93387 0.87905 0.92720 0.91985 0.89686 0.91773 0.88649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.42 71.98 0.68 -1.81 16 2 C -0.08 -1.63 5.34 29.85 0.16 -1.47 16 3 C -0.08 -1.57 5.18 -19.52 -0.10 -1.67 16 4 C -0.09 -1.01 9.82 22.45 0.22 -0.78 16 5 C -0.13 -1.19 10.11 22.44 0.23 -0.97 16 6 C 0.08 1.08 11.18 84.83 0.95 2.02 16 7 N -0.48 -9.96 9.56 -184.91 -1.77 -11.73 16 8 C 0.05 1.10 6.75 41.90 0.28 1.39 16 9 C 0.56 15.76 7.68 86.88 0.67 16.43 16 10 O -0.55 -17.37 11.15 -3.75 -0.04 -17.42 16 11 N -0.69 -18.50 5.24 -443.71 -2.32 -20.83 16 12 C 0.15 4.39 4.12 45.28 0.19 4.58 16 13 H 0.11 3.40 7.46 -2.39 -0.02 3.38 16 14 C -0.17 -5.88 7.68 31.23 0.24 -5.64 16 15 C 0.18 6.93 4.36 45.29 0.20 7.13 16 16 H 0.08 3.17 8.10 -2.39 -0.02 3.15 16 17 N -0.73 -33.84 5.13 -321.56 -1.65 -35.49 16 18 C -0.23 -13.14 10.45 84.03 0.88 -12.26 16 19 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 20 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 21 N -0.98 -63.64 13.97 21.65 0.30 -63.33 16 22 Si 0.95 45.56 27.74 68.60 1.90 47.46 16 23 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 24 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 25 H -0.25 -10.64 6.52 99.48 0.65 -9.99 16 26 C -0.11 -3.42 1.06 -52.31 -0.06 -3.48 16 27 C -0.11 -3.13 6.78 30.88 0.21 -2.92 16 28 C -0.13 -3.60 8.08 31.23 0.25 -3.35 16 29 C -0.12 -3.08 7.84 30.89 0.24 -2.84 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.04 0.95 6.55 -2.39 -0.02 0.94 16 33 H 0.09 1.20 8.04 -2.39 -0.02 1.18 16 34 H 0.08 1.90 5.97 -2.39 -0.01 1.89 16 35 H 0.17 0.91 8.06 -2.91 -0.02 0.88 16 36 H 0.18 0.21 8.06 -2.91 -0.02 0.19 16 37 H 0.19 1.31 8.06 -2.91 -0.02 1.29 16 38 H 0.41 10.30 6.38 -92.71 -0.59 9.71 16 39 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 40 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.37 16.34 3.78 -92.71 -0.35 15.99 16 42 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 43 H 0.10 2.32 7.03 -2.39 -0.02 2.30 16 44 H 0.05 1.69 6.42 -2.38 -0.02 1.68 16 45 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 47 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -72.74 380.28 2.11 -70.63 By element: Atomic # 1 Polarization: 39.55 SS G_CDS: -0.02 Total: 39.53 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 5.70 Total: -8.83 kcal Atomic # 7 Polarization: -125.94 SS G_CDS: -5.44 Total: -131.38 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.04 Total: -17.42 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.90 Total: 47.46 kcal Total: -72.74 2.11 -70.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078666708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.691 kcal (2) G-P(sol) polarization free energy of solvation -72.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds