Wall clock time and date at job start Sat Apr 11 2020 02:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47298 * 2 1 4 4 N 1.46500 * 109.47415 * 180.02562 * 3 2 1 5 5 C 1.36528 * 124.77144 * 90.01977 * 4 3 2 6 6 C 1.50700 * 125.38889 * 359.97438 * 5 4 3 7 7 C 1.34328 * 109.23081 * 180.02562 * 5 4 3 8 8 C 1.46970 * 106.38005 * 359.97438 * 7 5 4 9 9 C 1.41841 * 127.07933 * 179.73628 * 8 7 5 10 10 C 1.38073 * 120.00214 * 43.93465 * 9 8 7 11 11 C 1.43200 * 120.00254 * 189.60892 * 10 9 8 12 12 N 9.08521 * 159.15033 * 51.92083 * 2 1 3 13 13 C 1.46954 * 119.99952 * 9.60930 * 10 9 8 14 14 O 1.21670 * 119.99810 * 6.16050 * 13 10 9 15 15 N 1.34769 * 120.00059 * 186.15676 * 13 10 9 16 16 C 1.46502 * 120.00119 * 179.97438 * 15 13 10 17 17 C 1.52995 * 109.47299 * 180.02562 * 16 15 13 18 18 C 1.50708 * 109.47021 * 180.02562 * 17 16 15 19 19 H 1.07993 * 120.00290 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99764 * 180.02562 * 18 17 16 21 21 N 1.31520 * 120.00255 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00066 * 179.97438 * 20 18 17 23 23 H 1.48510 * 109.47198 * 89.99369 * 22 20 18 24 24 H 1.48495 * 109.47495 * 209.99789 * 22 20 18 25 25 H 1.48500 * 109.46723 * 329.99779 * 22 20 18 26 26 C 1.34570 * 124.77211 * 270.02229 * 4 3 2 27 27 C 1.50701 * 125.95180 * 0.02562 * 26 4 3 28 28 H 1.09005 * 109.47004 * 299.99955 * 1 2 3 29 29 H 1.08997 * 109.47199 * 60.00137 * 1 2 3 30 30 H 1.09004 * 109.47300 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47150 * 239.99522 * 2 1 3 32 32 H 1.09008 * 109.46891 * 119.99488 * 2 1 3 33 33 H 1.09003 * 109.47410 * 59.99682 * 3 2 1 34 34 H 1.09007 * 109.47017 * 300.00047 * 3 2 1 35 35 H 1.09005 * 109.47101 * 270.00260 * 6 5 4 36 36 H 1.09003 * 109.46891 * 29.99759 * 6 5 4 37 37 H 1.08990 * 109.47498 * 150.00044 * 6 5 4 38 38 H 1.08001 * 126.81136 * 180.02562 * 7 5 4 39 39 H 1.08003 * 119.99853 * 223.92767 * 9 8 7 40 40 H 0.96996 * 120.00436 * 0.02562 * 15 13 10 41 41 H 1.09000 * 109.47425 * 300.00746 * 16 15 13 42 42 H 1.09005 * 109.46852 * 60.00682 * 16 15 13 43 43 H 1.09003 * 109.47280 * 299.99826 * 17 16 15 44 44 H 1.08996 * 109.47549 * 60.00493 * 17 16 15 45 45 H 0.97003 * 120.00152 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.47335 * 270.00052 * 27 26 4 47 47 H 1.08997 * 109.47410 * 30.00090 * 27 26 4 48 48 H 1.09000 * 109.47405 * 150.00204 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2832 1.4431 -1.1224 6 6 3.7711 1.4432 -2.5398 7 6 5.5775 1.4423 -0.7631 8 6 5.5997 1.4419 0.7064 9 6 6.7440 1.4359 1.5445 10 6 7.8140 2.2602 1.2579 11 6 9.0450 2.1107 1.9741 12 7 10.0203 1.9943 2.5453 13 6 7.6895 3.2909 0.2179 14 8 6.6132 3.4935 -0.3120 15 7 8.7675 4.0117 -0.1489 16 6 8.6436 5.0389 -1.1861 17 6 10.0033 5.7031 -1.4113 18 6 9.8756 6.7601 -2.4779 19 1 8.9203 6.9399 -2.9483 20 6 10.9787 7.4970 -2.8538 21 7 12.1422 7.2777 -2.2812 22 14 10.8206 8.8067 -4.1762 23 1 10.4759 10.1069 -3.5467 24 1 12.1094 8.9348 -4.9028 25 1 9.7507 8.4198 -5.1306 26 6 4.2730 1.4419 1.1045 27 6 3.7761 1.4406 2.5272 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.6480 0.4155 -2.8817 36 1 2.8104 1.9567 -2.5789 37 1 4.4844 1.9574 -3.1838 38 1 6.4323 1.4429 -1.4231 39 1 6.7784 0.7866 2.4069 40 1 9.6257 3.8500 0.2733 41 1 8.3061 4.5787 -2.1148 42 1 7.9201 5.7900 -0.8690 43 1 10.3411 6.1633 -0.4828 44 1 10.7265 4.9519 -1.7287 45 1 12.9182 7.7963 -2.5454 46 1 3.6559 2.4679 2.8711 47 1 2.8163 0.9264 2.5764 48 1 4.4967 0.9266 3.1633 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490840607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:25:25 Heat of formation + Delta-G solvation = 37.634162 kcal Electronic energy + Delta-G solvation = -27358.746749 eV Core-core repulsion = 23607.525580 eV Total energy + Delta-G solvation = -3751.221170 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.43371 -39.25354 -36.51620 -35.73177 -34.77085 -33.71148 -32.76484 -32.53818 -30.80617 -29.51243 -29.22513 -26.64061 -25.38430 -24.55235 -22.94593 -22.12439 -21.29164 -20.65542 -19.98571 -18.58321 -17.94829 -16.52482 -16.31014 -15.77392 -15.40891 -15.08064 -14.86926 -14.76390 -14.43616 -14.19335 -13.93431 -13.74164 -13.47091 -13.39804 -13.28133 -13.01181 -12.87252 -12.72854 -12.54878 -12.50685 -12.44365 -12.34023 -12.23580 -12.08587 -11.96757 -11.57107 -11.47345 -11.25878 -11.14051 -10.99333 -10.60269 -10.25630 -9.95693 -9.57692 -9.36294 -9.13559 -8.47295 -8.28697 -7.86513 -7.56892 -6.03829 -4.06846 0.60152 2.25431 2.72999 2.80744 2.93699 3.19755 3.32359 3.38258 3.41949 3.80064 3.92908 4.13817 4.28413 4.37558 4.45927 4.51733 4.72966 4.76399 4.83034 4.95290 5.01152 5.09663 5.19162 5.23347 5.29360 5.32732 5.38973 5.47387 5.50671 5.53385 5.56977 5.63745 5.72952 5.86951 5.92110 5.99170 6.29344 6.36026 6.43051 6.47832 6.81447 6.99394 7.03030 7.22762 7.34238 7.58923 7.61539 7.69215 7.94489 8.12365 8.33859 8.77542 8.99437 9.57495 11.07744 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.013254 B = 0.002655 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.138752 B =10544.622994 C =12222.374089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.099 3.901 4 N -0.433 5.433 5 C -0.008 4.008 6 C -0.079 4.079 7 C -0.087 4.087 8 C -0.185 4.185 9 C 0.108 3.892 10 C -0.152 4.152 11 C 0.254 3.746 12 N -0.426 5.426 13 C 0.558 3.442 14 O -0.519 6.519 15 N -0.721 5.721 16 C 0.126 3.874 17 C 0.010 3.990 18 C -0.519 4.519 19 H 0.059 0.941 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.897 3.103 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C 0.076 3.924 27 C -0.091 4.091 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.137 0.863 39 H 0.132 0.868 40 H 0.394 0.606 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.021 0.979 44 H 0.022 0.978 45 H 0.262 0.738 46 H 0.077 0.923 47 H 0.065 0.935 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.089 -17.637 7.270 30.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C -0.023 4.023 4 N -0.110 5.110 5 C -0.113 4.113 6 C -0.137 4.137 7 C -0.110 4.110 8 C -0.192 4.192 9 C 0.083 3.917 10 C -0.159 4.159 11 C -0.060 4.060 12 N -0.102 5.102 13 C 0.343 3.657 14 O -0.397 6.397 15 N -0.370 5.370 16 C 0.004 3.996 17 C -0.027 4.027 18 C -0.558 4.558 19 H 0.078 0.922 20 C -0.144 4.144 21 N -0.532 5.532 22 Si 0.724 3.276 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.040 4.040 27 C -0.148 4.148 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.155 0.845 39 H 0.149 0.851 40 H 0.227 0.773 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.040 0.960 44 H 0.040 0.960 45 H 0.071 0.929 46 H 0.095 0.905 47 H 0.084 0.916 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -23.509 -17.544 7.656 30.316 hybrid contribution 0.265 0.904 -0.681 1.162 sum -23.244 -16.640 6.975 29.425 Atomic orbital electron populations 1.21709 0.94567 1.02369 1.02194 1.21909 0.96488 0.95975 1.03366 1.21909 0.77906 0.98161 1.04342 1.43328 1.05551 1.56989 1.05123 1.19972 0.90360 1.12816 0.88159 1.20262 1.01237 1.01823 0.90365 1.21541 0.94679 1.02309 0.92469 1.18152 0.90395 1.17087 0.93610 1.21102 0.89047 0.88663 0.92864 1.18350 0.90032 1.03924 1.03631 1.25717 0.93105 0.93753 0.93375 1.81271 1.10693 1.08587 1.09694 1.17585 0.84744 0.81388 0.81953 1.90873 1.26086 1.67951 1.54751 1.46333 1.11137 1.38412 1.41139 1.21676 1.01245 0.88254 0.88415 1.19337 0.90160 0.95614 0.97595 1.21038 0.95531 1.18591 1.20653 0.92248 1.25014 0.95266 0.97408 0.96714 1.69969 0.99917 1.40895 1.42442 0.86520 0.77449 0.81872 0.81737 1.20608 1.21212 1.19747 1.20603 0.89675 1.05015 0.88694 1.20428 1.01542 1.03080 0.89761 0.92403 0.92329 0.92066 0.91087 0.91271 0.89460 0.89231 0.91772 0.92323 0.90103 0.84480 0.85075 0.77317 0.92436 0.92534 0.96047 0.95979 0.92879 0.90484 0.91568 0.89947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.91 37.16 0.37 -0.20 16 2 C -0.14 -0.72 6.26 -26.73 -0.17 -0.89 16 3 C 0.10 0.64 5.36 -4.04 -0.02 0.62 16 4 N -0.43 -4.30 2.68 -107.51 -0.29 -4.59 16 5 C -0.01 -0.09 6.84 -81.88 -0.56 -0.65 16 6 C -0.08 -0.73 10.04 36.01 0.36 -0.37 16 7 C -0.09 -1.18 7.79 -37.43 -0.29 -1.47 16 8 C -0.18 -2.27 4.71 -104.88 -0.49 -2.77 16 9 C 0.11 1.22 9.30 -38.26 -0.36 0.86 16 10 C -0.15 -2.12 5.87 -104.50 -0.61 -2.73 16 11 C 0.25 3.76 14.20 -22.46 -0.32 3.44 16 12 N -0.43 -7.04 18.54 41.85 0.78 -6.26 16 13 C 0.56 9.63 7.34 -12.73 -0.09 9.54 16 14 O -0.52 -9.83 12.09 5.22 0.06 -9.77 16 15 N -0.72 -13.57 5.51 -61.53 -0.34 -13.90 16 16 C 0.13 2.75 5.61 -4.04 -0.02 2.72 16 17 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 18 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 19 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 22 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 26 C 0.08 0.78 6.95 -81.29 -0.56 0.22 16 27 C -0.09 -0.60 9.63 36.01 0.35 -0.26 16 28 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.38 8.14 -51.92 -0.42 -0.05 16 33 H 0.09 0.47 7.50 -51.93 -0.39 0.08 16 34 H 0.09 0.55 6.87 -51.93 -0.36 0.19 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.46 6.92 -51.93 -0.36 0.10 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.14 2.00 7.70 -52.49 -0.40 1.60 16 39 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 40 H 0.39 7.20 7.37 -40.82 -0.30 6.90 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.32 7.59 -51.93 -0.39 -0.07 16 48 H 0.08 0.44 7.95 -51.93 -0.41 0.03 16 LS Contribution 406.13 15.07 6.12 6.12 Total: -1.00 -33.67 406.13 -8.59 -42.26 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -7.65 Total: 0.77 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -2.98 Total: -5.23 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: 0.89 Total: -50.84 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.06 Total: -9.77 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.67 -8.59 -42.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490840607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.893 kcal (2) G-P(sol) polarization free energy of solvation -33.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds