Wall clock time and date at job start Sat Apr 11 2020 02:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50706 * 119.99707 * 2 1 4 4 N 1.46496 * 109.47107 * 125.19981 * 3 2 1 5 5 C 1.35535 * 125.67844 * 265.84963 * 4 3 2 6 6 C 1.35454 * 108.87479 * 180.02562 * 5 4 3 7 7 C 1.39831 * 107.86397 * 0.02562 * 6 5 4 8 8 C 1.37653 * 125.68171 * 85.87249 * 4 3 2 9 9 C 1.46674 * 126.23322 * 0.02562 * 8 4 3 10 10 O 1.21695 * 119.99932 * 341.69530 * 9 8 4 11 11 N 1.34776 * 120.00469 * 161.69153 * 9 8 4 12 12 C 1.46604 * 119.68079 * 353.20872 * 11 9 8 13 13 C 1.53532 * 110.81623 * 227.72728 * 12 11 9 14 14 C 1.51526 * 107.42420 * 309.22408 * 13 12 11 15 15 H 1.08998 * 108.81492 * 306.40037 * 14 13 12 16 16 C 1.55367 * 107.78401 * 64.70926 * 14 13 12 17 17 H 1.09001 * 112.26905 * 50.84029 * 16 14 13 18 18 C 1.53744 * 100.22216 * 169.05624 * 16 14 13 19 19 C 1.55287 * 101.84543 * 320.91305 * 18 16 14 20 20 N 1.45473 * 117.33841 * 181.74722 * 14 13 12 21 21 C 1.36933 * 126.40659 * 30.64685 * 20 14 13 22 22 H 1.08001 * 120.00114 * 359.97345 * 21 20 14 23 23 C 1.38812 * 120.00210 * 179.97438 * 21 20 14 24 24 N 1.31624 * 119.99801 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00169 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46721 * 60.00350 * 25 23 21 27 27 H 1.48498 * 109.46906 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47100 * 300.00086 * 25 23 21 29 29 C 1.47714 * 119.68797 * 173.47795 * 11 9 8 30 30 H 1.08007 * 120.00270 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.00429 * 179.97438 * 1 2 3 32 32 H 1.07999 * 120.00519 * 179.97438 * 2 1 3 33 33 H 1.08992 * 109.47233 * 5.19638 * 3 2 1 34 34 H 1.08999 * 109.47094 * 245.19325 * 3 2 1 35 35 H 1.08002 * 125.56502 * 0.02849 * 5 4 3 36 36 H 1.08001 * 126.06229 * 180.26752 * 6 5 4 37 37 H 1.08005 * 126.45836 * 179.97438 * 7 6 5 38 38 H 1.08994 * 109.25482 * 348.09948 * 12 11 9 39 39 H 1.08999 * 109.25212 * 107.53430 * 12 11 9 40 40 H 1.09000 * 109.96841 * 189.66967 * 13 12 11 41 41 H 1.09000 * 109.71763 * 68.63742 * 13 12 11 42 42 H 1.09000 * 110.94844 * 79.05007 * 18 16 14 43 43 H 1.08996 * 110.95127 * 202.76763 * 18 16 14 44 44 H 1.08993 * 109.92162 * 141.82680 * 19 18 16 45 45 H 1.08997 * 109.91768 * 262.93255 * 19 18 16 46 46 H 0.97002 * 119.99603 * 179.97438 * 24 23 21 47 47 H 1.09001 * 110.07505 * 247.15537 * 29 11 9 48 48 H 1.09007 * 110.07190 * 8.73823 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9971 1.3301 1.1286 5 6 2.7481 1.8648 2.3489 6 6 3.8424 1.7019 3.1303 7 6 4.8152 1.0412 2.3737 8 6 4.2734 0.8146 1.1263 9 6 4.9370 0.1477 0.0010 10 8 4.2762 -0.2896 -0.9226 11 7 6.2786 0.0190 -0.0101 12 6 7.0795 0.6763 1.0271 13 6 8.2610 1.4345 0.4054 14 6 8.9794 0.4743 -0.5208 15 1 9.2294 -0.4294 0.0349 16 6 8.0058 0.1111 -1.6758 17 1 7.5713 0.9949 -2.1431 18 6 8.9721 -0.6080 -2.6313 19 6 10.2544 0.2577 -2.4989 20 7 10.1688 0.9648 -1.1998 21 6 11.0454 1.9044 -0.7266 22 1 10.8822 2.3567 0.2405 23 6 12.1438 2.2757 -1.4899 24 7 12.3423 1.7249 -2.6688 25 14 13.3392 3.5580 -0.8448 26 1 13.9329 3.0836 0.4311 27 1 14.4181 3.7748 -1.8418 28 1 12.6172 4.8343 -0.6105 29 6 6.9283 -0.7779 -1.0706 30 1 -0.5401 0.9353 -0.0004 31 1 -0.5401 -0.9352 -0.0004 32 1 1.8500 -0.9352 0.0004 33 1 1.3588 2.1315 0.0931 34 1 2.6185 1.4043 -0.9328 35 1 1.8273 2.3428 2.6493 36 1 3.9440 2.0218 4.1568 37 1 5.8044 0.7608 2.7043 38 1 6.4514 1.3785 1.5752 39 1 7.4624 -0.0762 1.7163 40 1 8.9400 1.7722 1.1884 41 1 7.8922 2.2897 -0.1609 42 1 9.1565 -1.6306 -2.3022 43 1 8.5940 -0.5912 -3.6534 44 1 11.1373 -0.3811 -2.5165 45 1 10.3016 0.9787 -3.3151 46 1 13.1097 1.9846 -3.2023 47 1 7.3791 -1.6734 -0.6427 48 1 6.1986 -1.0525 -1.8324 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036736628.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:25:41 Heat of formation + Delta-G solvation = 90.636978 kcal Electronic energy + Delta-G solvation = -28847.123012 eV Core-core repulsion = 25098.200217 eV Total energy + Delta-G solvation = -3748.922795 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.66297 -39.76696 -37.99307 -35.84048 -35.07813 -32.79661 -31.58678 -31.52350 -30.30089 -29.04434 -27.73567 -26.31201 -25.05360 -23.87687 -22.49174 -21.50403 -20.90131 -20.44293 -20.00199 -19.54280 -18.91317 -17.27900 -16.58471 -16.07252 -15.71278 -15.63476 -15.10772 -14.95504 -14.57099 -14.26913 -14.13180 -13.74058 -13.62602 -13.39097 -13.15279 -13.02719 -12.77337 -12.60299 -12.43504 -12.18791 -11.97560 -11.59417 -11.54137 -11.43123 -11.22741 -10.79870 -10.71538 -10.64423 -10.17139 -10.08422 -9.91695 -9.85035 -9.71132 -9.60185 -9.43383 -8.83540 -8.61013 -8.53131 -8.22339 -6.82393 -5.70346 -3.03408 1.43280 1.78110 2.60677 2.67176 3.28688 3.37728 3.40855 3.45134 3.46346 4.44065 4.49370 4.52915 4.58264 4.86124 4.99418 5.09355 5.15053 5.21313 5.28502 5.29557 5.35820 5.38499 5.54672 5.57573 5.61124 5.66764 5.84301 5.90632 5.95336 6.03144 6.04905 6.18589 6.21998 6.25359 6.26954 6.30712 6.37696 6.50181 6.62973 6.65740 6.70142 6.86337 6.89184 7.09124 7.09662 7.50561 7.56511 7.62585 7.82090 8.23339 8.25725 9.20640 9.84294 10.52615 11.42209 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.019807 B = 0.003015 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.283151 B = 9285.679377 C =10186.381953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.156 4.156 3 C 0.132 3.868 4 N -0.407 5.407 5 C 0.012 3.988 6 C -0.207 4.207 7 C -0.155 4.155 8 C -0.042 4.042 9 C 0.583 3.417 10 O -0.556 6.556 11 N -0.591 5.591 12 C 0.082 3.918 13 C -0.130 4.130 14 C 0.168 3.832 15 H 0.020 0.980 16 C -0.123 4.123 17 H 0.079 0.921 18 C -0.136 4.136 19 C 0.177 3.823 20 N -0.595 5.595 21 C -0.225 4.225 22 H 0.078 0.922 23 C -0.009 4.009 24 N -0.922 5.922 25 Si 0.910 3.090 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.285 1.285 29 C 0.129 3.871 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.119 0.881 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.165 0.835 36 H 0.142 0.858 37 H 0.160 0.840 38 H 0.111 0.889 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.038 0.962 45 H 0.054 0.946 46 H 0.252 0.748 47 H 0.070 0.930 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.764 -2.497 8.633 22.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.175 4.175 3 C 0.011 3.989 4 N -0.080 5.080 5 C -0.123 4.123 6 C -0.231 4.231 7 C -0.181 4.181 8 C -0.155 4.155 9 C 0.372 3.628 10 O -0.436 6.436 11 N -0.323 5.323 12 C -0.041 4.041 13 C -0.169 4.169 14 C 0.059 3.941 15 H 0.037 0.963 16 C -0.144 4.144 17 H 0.097 0.903 18 C -0.175 4.175 19 C 0.053 3.947 20 N -0.319 5.319 21 C -0.353 4.353 22 H 0.096 0.904 23 C -0.205 4.205 24 N -0.570 5.570 25 Si 0.740 3.260 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.212 1.212 29 C 0.007 3.993 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.137 0.863 33 H 0.110 0.890 34 H 0.125 0.875 35 H 0.182 0.818 36 H 0.160 0.840 37 H 0.177 0.823 38 H 0.128 0.872 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.056 0.944 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.088 0.912 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.070 -2.632 7.742 22.601 hybrid contribution 0.769 0.725 0.327 1.106 sum -20.301 -1.907 8.069 21.929 Atomic orbital electron populations 1.23871 0.95491 1.02192 1.00294 1.23125 0.95840 0.98657 0.99852 1.21051 0.91716 0.96733 0.89405 1.43951 1.10730 1.42293 1.11014 1.21971 1.01131 1.04422 0.84746 1.20864 0.94030 1.07825 1.00416 1.21875 1.00321 1.03396 0.92490 1.20146 0.87159 1.10900 0.97303 1.17069 0.82204 0.79101 0.84428 1.90769 1.64377 1.51275 1.37179 1.47939 1.04741 1.50296 1.29282 1.22656 0.94196 0.97273 0.89935 1.21839 0.95790 0.99034 1.00254 1.20638 0.87034 0.94587 0.91797 0.96285 1.22624 0.94824 0.98906 0.98025 0.90284 1.22718 0.97786 0.98955 0.98024 1.21515 0.91624 0.93111 0.88438 1.44197 1.24075 1.46416 1.17206 1.18951 1.01736 1.13612 1.01025 0.90413 1.24793 0.98767 1.00173 0.96747 1.69933 1.30188 1.45361 1.11499 0.86232 0.80723 0.81345 0.77665 1.21191 1.21664 1.21211 1.21654 0.95173 0.93072 0.89400 0.88454 0.87878 0.86279 0.88997 0.87495 0.81753 0.84023 0.82252 0.87158 0.91591 0.90435 0.91534 0.92333 0.92097 0.94400 0.92775 0.93732 0.91193 0.89182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 14.32 29.02 0.42 -0.97 16 2 C -0.16 -1.56 9.53 -36.02 -0.34 -1.91 16 3 C 0.13 1.33 5.80 -5.19 -0.03 1.30 16 4 N -0.41 -4.72 2.74 -114.16 -0.31 -5.03 16 5 C 0.01 0.12 11.37 -16.91 -0.19 -0.08 16 6 C -0.21 -2.09 10.81 -39.98 -0.43 -2.53 16 7 C -0.16 -1.81 8.52 -39.12 -0.33 -2.14 16 8 C -0.04 -0.56 6.56 -81.98 -0.54 -1.10 16 9 C 0.58 9.01 7.53 -12.86 -0.10 8.91 16 10 O -0.56 -9.62 14.14 5.19 0.07 -9.55 16 11 N -0.59 -8.86 3.00 -174.29 -0.52 -9.38 16 12 C 0.08 1.12 4.80 -3.71 -0.02 1.10 16 13 C -0.13 -2.22 5.46 -27.20 -0.15 -2.37 16 14 C 0.17 3.34 2.57 -67.97 -0.17 3.17 16 15 H 0.02 0.40 7.92 -51.93 -0.41 -0.01 16 16 C -0.12 -2.22 2.85 -89.37 -0.26 -2.48 16 17 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 18 C -0.14 -2.53 6.54 -25.13 -0.16 -2.70 16 19 C 0.18 4.28 5.45 -1.92 -0.01 4.27 16 20 N -0.59 -14.81 3.35 -163.09 -0.55 -15.36 16 21 C -0.23 -6.11 9.88 -15.06 -0.15 -6.26 16 22 H 0.08 2.01 7.21 -52.49 -0.38 1.63 16 23 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 24 N -0.92 -27.01 10.44 55.49 0.58 -26.43 16 25 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 29 C 0.13 1.99 5.97 -3.77 -0.02 1.97 16 30 H 0.10 0.58 7.84 -52.48 -0.41 0.17 16 31 H 0.10 0.70 8.06 -52.49 -0.42 0.27 16 32 H 0.12 1.45 7.89 -52.49 -0.41 1.04 16 33 H 0.09 0.66 7.78 -51.93 -0.40 0.26 16 34 H 0.11 1.27 7.07 -51.93 -0.37 0.90 16 35 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.16 1.64 5.43 -52.48 -0.28 1.36 16 38 H 0.11 1.35 3.81 -51.93 -0.20 1.15 16 39 H 0.07 0.81 8.04 -51.93 -0.42 0.39 16 40 H 0.08 1.32 7.62 -51.93 -0.40 0.92 16 41 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 42 H 0.06 1.00 8.11 -51.93 -0.42 0.58 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 45 H 0.05 1.45 7.21 -51.93 -0.37 1.08 16 46 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 47 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 48 H 0.09 1.42 6.98 -51.92 -0.36 1.06 16 LS Contribution 373.67 15.07 5.63 5.63 Total: -1.00 -31.98 373.67 -10.05 -42.03 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -7.33 Total: 3.31 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -2.59 Total: -2.13 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.80 Total: -56.21 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.07 Total: -9.55 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.98 -10.05 -42.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036736628.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.663 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds