Wall clock time and date at job start Sat Apr 11 2020 02:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 120.00151 * 2 1 4 4 N 1.46503 * 109.46790 * 122.02814 * 3 2 1 5 5 C 1.35522 * 125.68420 * 261.55465 * 4 3 2 6 6 C 1.35451 * 108.87628 * 179.75844 * 5 4 3 7 7 C 1.39837 * 107.86212 * 0.22545 * 6 5 4 8 8 C 1.37660 * 125.67288 * 81.70402 * 4 3 2 9 9 C 1.46677 * 126.23511 * 0.02562 * 8 4 3 10 10 O 1.21698 * 119.99618 * 23.68967 * 9 8 4 11 11 N 1.34771 * 120.00332 * 203.68255 * 9 8 4 12 12 C 1.46603 * 119.68023 * 7.05150 * 11 9 8 13 13 C 1.53959 * 110.57021 * 132.14964 * 12 11 9 14 14 C 1.51516 * 107.34679 * 51.06019 * 13 12 11 15 15 H 1.08998 * 109.28324 * 53.69260 * 14 13 12 16 16 C 1.55371 * 107.79165 * 295.14107 * 14 13 12 17 17 H 1.09001 * 111.50598 * 308.81309 * 16 14 13 18 18 C 1.53434 * 100.35930 * 190.35411 * 16 14 13 19 19 C 1.55292 * 101.41847 * 39.94740 * 18 16 14 20 20 N 1.45464 * 117.35314 * 178.76474 * 14 13 12 21 21 C 1.36938 * 126.40500 * 329.33816 * 20 14 13 22 22 H 1.07999 * 119.99886 * 0.02562 * 21 20 14 23 23 C 1.38813 * 119.99997 * 180.02562 * 21 20 14 24 24 N 1.31620 * 119.99721 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99895 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47104 * 60.00296 * 25 23 21 27 27 H 1.48500 * 109.46863 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47300 * 299.99776 * 25 23 21 29 29 C 1.47720 * 119.68656 * 186.78383 * 11 9 8 30 30 H 1.08002 * 120.00156 * 179.97438 * 1 2 3 31 31 H 1.07997 * 119.99972 * 359.97438 * 1 2 3 32 32 H 1.07997 * 119.99972 * 180.02562 * 2 1 3 33 33 H 1.08998 * 109.46928 * 2.03563 * 3 2 1 34 34 H 1.08997 * 109.47441 * 242.03144 * 3 2 1 35 35 H 1.08007 * 125.56117 * 0.02562 * 5 4 3 36 36 H 1.08005 * 126.06982 * 180.26744 * 6 5 4 37 37 H 1.07997 * 126.45143 * 180.02562 * 7 6 5 38 38 H 1.08998 * 109.25849 * 252.43595 * 12 11 9 39 39 H 1.09000 * 109.25703 * 11.87521 * 12 11 9 40 40 H 1.09004 * 109.87708 * 170.51193 * 13 12 11 41 41 H 1.08997 * 109.88285 * 291.59907 * 13 12 11 42 42 H 1.08995 * 111.57719 * 281.76969 * 18 16 14 43 43 H 1.08997 * 110.72600 * 157.75679 * 18 16 14 44 44 H 1.08991 * 109.92062 * 217.68544 * 19 18 16 45 45 H 1.08995 * 110.08573 * 96.46870 * 19 18 16 46 46 H 0.97008 * 119.99371 * 179.97438 * 24 23 21 47 47 H 1.09000 * 110.06376 * 351.28851 * 29 11 9 48 48 H 1.08995 * 110.07236 * 112.87020 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9420 1.3617 1.1710 5 6 2.6681 2.0000 2.3347 6 6 3.7095 1.8293 3.1838 7 6 4.6757 1.0597 2.5284 8 6 4.1845 0.7776 1.2714 9 6 4.8605 -0.0065 0.2323 10 8 4.5651 0.1513 -0.9377 11 7 5.8087 -0.9015 0.5732 12 6 6.0510 -1.1990 1.9881 13 6 6.1074 -2.7202 2.2190 14 6 7.0852 -3.2937 1.2136 15 1 8.0356 -2.7663 1.2946 16 6 6.4946 -3.0671 -0.2055 17 1 5.4672 -3.4248 -0.2726 18 6 7.4510 -3.9264 -1.0428 19 6 7.6392 -5.1629 -0.1223 20 7 7.3265 -4.7275 1.2590 21 6 7.2752 -5.5255 2.3707 22 1 7.0360 -5.0967 3.3326 23 6 7.5307 -6.8855 2.2612 24 7 7.8228 -7.4079 1.0890 25 14 7.4601 -7.9741 3.7775 26 1 6.0994 -7.9112 4.3690 27 1 7.7689 -9.3755 3.3955 28 1 8.4551 -7.5012 4.7732 29 6 6.5899 -1.5776 -0.4827 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8499 -0.9353 -0.0004 33 1 1.3558 2.1333 0.0365 34 1 2.6626 1.3788 -0.9076 35 1 1.7648 2.5511 2.5513 36 1 3.7807 2.2180 4.1890 37 1 5.6271 0.7452 2.9311 38 1 6.9984 -0.7539 2.2920 39 1 5.2460 -0.7741 2.5877 40 1 6.4522 -2.9287 3.2318 41 1 5.1199 -3.1553 2.0655 42 1 8.4006 -3.4192 -1.2132 43 1 6.9875 -4.2107 -1.9874 44 1 8.6699 -5.5131 -0.1769 45 1 6.9597 -5.9603 -0.4230 46 1 8.0017 -8.3583 1.0126 47 1 6.1677 -1.3528 -1.4621 48 1 7.6311 -1.2579 -0.4404 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036736629.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:25:44 Heat of formation + Delta-G solvation = 84.957186 kcal Electronic energy + Delta-G solvation = -29005.575692 eV Core-core repulsion = 25256.406603 eV Total energy + Delta-G solvation = -3749.169089 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.64111 -39.78194 -38.01630 -35.79612 -35.10512 -32.79880 -31.55797 -31.52035 -30.28891 -29.02494 -27.74516 -26.29509 -25.04031 -23.86448 -22.46384 -21.53059 -20.88392 -20.40368 -20.01607 -19.58750 -18.88889 -17.27336 -16.56378 -16.06130 -15.80140 -15.51449 -15.26508 -14.87596 -14.44804 -14.32421 -14.08533 -13.79904 -13.68938 -13.31050 -13.22489 -12.97003 -12.85683 -12.55183 -12.43515 -12.08739 -12.04212 -11.60446 -11.56152 -11.42794 -11.26563 -10.80437 -10.73320 -10.68142 -10.18135 -10.09778 -9.95448 -9.86922 -9.69567 -9.60966 -9.43623 -8.81150 -8.61224 -8.53813 -8.21549 -6.82637 -5.70493 -3.03584 1.46470 1.74763 2.62101 2.68046 3.29405 3.36575 3.40687 3.45040 3.46206 4.41489 4.49279 4.54125 4.58349 4.86869 4.98686 5.09658 5.13530 5.25055 5.29181 5.30040 5.38526 5.39741 5.54328 5.57010 5.61094 5.67446 5.84210 5.90533 5.96971 6.03655 6.05091 6.17985 6.21616 6.23054 6.26396 6.30770 6.37541 6.49535 6.62735 6.66070 6.70849 6.86691 6.89911 7.09092 7.10454 7.50158 7.56231 7.62405 7.81917 8.22700 8.25641 9.20402 9.84121 10.52328 11.41979 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.015480 B = 0.003221 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.371957 B = 8691.045799 C = 9037.642435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.167 4.167 3 C 0.125 3.875 4 N -0.406 5.406 5 C 0.011 3.989 6 C -0.208 4.208 7 C -0.150 4.150 8 C -0.042 4.042 9 C 0.584 3.416 10 O -0.556 6.556 11 N -0.592 5.592 12 C 0.090 3.910 13 C -0.129 4.129 14 C 0.167 3.833 15 H 0.021 0.979 16 C -0.123 4.123 17 H 0.079 0.921 18 C -0.136 4.136 19 C 0.177 3.823 20 N -0.595 5.595 21 C -0.226 4.226 22 H 0.078 0.922 23 C -0.008 4.008 24 N -0.922 5.922 25 Si 0.910 3.090 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.285 1.285 29 C 0.128 3.872 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.093 0.907 34 H 0.115 0.885 35 H 0.165 0.835 36 H 0.142 0.858 37 H 0.154 0.846 38 H 0.066 0.934 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.037 0.963 45 H 0.054 0.946 46 H 0.252 0.748 47 H 0.090 0.910 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.237 19.128 -0.063 21.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.186 4.186 3 C 0.005 3.995 4 N -0.079 5.079 5 C -0.123 4.123 6 C -0.232 4.232 7 C -0.176 4.176 8 C -0.156 4.156 9 C 0.374 3.626 10 O -0.437 6.437 11 N -0.323 5.323 12 C -0.033 4.033 13 C -0.168 4.168 14 C 0.058 3.942 15 H 0.038 0.962 16 C -0.144 4.144 17 H 0.098 0.902 18 C -0.175 4.175 19 C 0.053 3.947 20 N -0.320 5.320 21 C -0.354 4.354 22 H 0.096 0.904 23 C -0.204 4.204 24 N -0.570 5.570 25 Si 0.740 3.260 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 C 0.007 3.993 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.133 0.867 33 H 0.111 0.889 34 H 0.133 0.867 35 H 0.182 0.818 36 H 0.160 0.840 37 H 0.171 0.829 38 H 0.084 0.916 39 H 0.122 0.878 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.056 0.944 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.108 0.892 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.529 18.909 -0.945 21.664 hybrid contribution -0.032 -0.774 0.917 1.200 sum -10.561 18.135 -0.029 20.986 Atomic orbital electron populations 1.23905 0.95456 1.02340 0.99216 1.23122 0.96173 0.98462 1.00833 1.21164 0.93155 0.96632 0.88571 1.43954 1.13148 1.38422 1.12410 1.21969 1.01536 1.02797 0.86014 1.20841 0.95303 1.06468 1.00576 1.21692 1.01110 1.02306 0.92460 1.20124 0.89511 1.08345 0.97570 1.17078 0.79301 0.79322 0.86940 1.90748 1.65123 1.68427 1.19379 1.47969 1.36296 1.40000 1.08047 1.22526 1.02395 0.97516 0.80841 1.21890 1.01065 0.92804 1.01009 1.20667 0.94300 0.87310 0.91876 0.96204 1.22514 1.00246 0.92762 0.98854 0.90220 1.22658 0.97822 0.98659 0.98380 1.21528 0.99825 0.91546 0.81840 1.44217 1.81526 1.01425 1.04805 1.18958 1.40928 0.88996 0.86522 0.90422 1.24787 1.01963 0.96780 0.96898 1.69934 1.53623 1.11725 1.21669 0.86236 0.77798 0.79879 0.82075 1.21228 1.21650 1.21181 1.21584 0.94892 0.91880 0.90969 0.87711 0.88328 0.86711 0.88888 0.86701 0.81762 0.84044 0.82873 0.91564 0.87837 0.90480 0.91519 0.92197 0.92114 0.94433 0.92728 0.93741 0.89190 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 14.32 29.02 0.42 -1.00 16 2 C -0.17 -1.77 9.84 -36.02 -0.35 -2.12 16 3 C 0.13 1.28 6.08 -5.19 -0.03 1.25 16 4 N -0.41 -4.76 2.75 -114.15 -0.31 -5.07 16 5 C 0.01 0.11 11.36 -16.92 -0.19 -0.08 16 6 C -0.21 -2.11 10.81 -39.98 -0.43 -2.55 16 7 C -0.15 -1.76 8.43 -39.12 -0.33 -2.09 16 8 C -0.04 -0.57 6.41 -81.98 -0.53 -1.10 16 9 C 0.58 9.11 7.52 -12.86 -0.10 9.01 16 10 O -0.56 -9.81 14.44 5.19 0.07 -9.73 16 11 N -0.59 -8.90 3.01 -174.28 -0.52 -9.43 16 12 C 0.09 1.23 4.83 -3.49 -0.02 1.22 16 13 C -0.13 -2.20 5.47 -26.98 -0.15 -2.35 16 14 C 0.17 3.32 2.58 -67.98 -0.18 3.15 16 15 H 0.02 0.42 7.95 -51.93 -0.41 0.00 16 16 C -0.12 -2.22 2.83 -89.74 -0.25 -2.47 16 17 H 0.08 1.57 8.12 -51.93 -0.42 1.15 16 18 C -0.14 -2.54 6.51 -25.29 -0.16 -2.70 16 19 C 0.18 4.26 5.44 -1.91 -0.01 4.25 16 20 N -0.60 -14.83 3.34 -163.09 -0.55 -15.38 16 21 C -0.23 -6.13 9.88 -15.06 -0.15 -6.28 16 22 H 0.08 2.01 7.23 -52.49 -0.38 1.63 16 23 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 24 N -0.92 -26.97 10.43 55.49 0.58 -26.39 16 25 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 29 C 0.13 1.99 5.92 -3.98 -0.02 1.97 16 30 H 0.10 0.81 8.06 -52.49 -0.42 0.39 16 31 H 0.10 0.62 7.83 -52.49 -0.41 0.21 16 32 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.09 0.66 7.75 -51.93 -0.40 0.26 16 34 H 0.12 1.37 6.57 -51.93 -0.34 1.03 16 35 H 0.17 1.06 8.06 -52.48 -0.42 0.64 16 36 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 37 H 0.15 1.59 5.86 -52.49 -0.31 1.28 16 38 H 0.07 0.82 8.00 -51.93 -0.42 0.40 16 39 H 0.10 1.30 4.18 -51.93 -0.22 1.08 16 40 H 0.08 1.32 7.65 -51.93 -0.40 0.92 16 41 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16 42 H 0.06 1.02 8.12 -51.93 -0.42 0.60 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 45 H 0.05 1.47 7.20 -51.93 -0.37 1.09 16 46 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 47 H 0.09 1.43 6.98 -51.93 -0.36 1.06 16 48 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 LS Contribution 374.68 15.07 5.65 5.65 Total: -1.00 -32.07 374.68 -10.05 -42.12 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -7.36 Total: 3.54 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -2.58 Total: -2.22 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.80 Total: -56.26 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.07 Total: -9.73 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.07 -10.05 -42.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036736629.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.073 kcal (2) G-P(sol) polarization free energy of solvation -32.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds