Wall clock time and date at job start Sat Apr 11 2020 02:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.47229 * 2 1 4 4 C 1.52998 * 109.47309 * 119.99858 * 2 1 3 5 5 C 1.53004 * 109.47475 * 185.00095 * 4 2 1 6 6 C 1.52994 * 109.47144 * 180.02562 * 5 4 2 7 7 C 1.53006 * 109.46829 * 179.97438 * 6 5 4 8 8 N 1.46505 * 109.46975 * 180.02562 * 7 6 5 9 9 C 1.36936 * 119.99945 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99687 * 359.97438 * 9 8 7 11 11 C 1.38812 * 119.99741 * 180.02562 * 9 8 7 12 12 N 1.31616 * 120.00319 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99597 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47371 * 59.99823 * 13 11 9 15 15 H 1.48498 * 109.46818 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46931 * 299.99623 * 13 11 9 17 17 N 1.46505 * 109.47130 * 239.99932 * 2 1 3 18 18 C 1.34777 * 119.99724 * 85.00158 * 17 2 1 19 19 O 1.21673 * 120.00213 * 359.97438 * 18 17 2 20 20 C 1.46907 * 119.99615 * 179.72552 * 18 17 2 21 21 C 1.36374 * 126.76998 * 359.95643 * 20 18 17 22 22 N 1.35471 * 109.77010 * 179.86380 * 21 20 18 23 23 H 0.97000 * 124.79177 * 180.16302 * 22 21 20 24 24 C 1.37972 * 110.42653 * 0.42051 * 22 21 20 25 25 C 1.39114 * 133.19144 * 179.75770 * 24 22 21 26 26 C 1.37760 * 119.93378 * 180.02562 * 25 24 22 27 27 C 1.38751 * 120.63086 * 359.95269 * 26 25 24 28 28 C 1.37756 * 120.30509 * 0.02562 * 27 26 25 29 29 C 1.39272 * 119.66835 * 359.97438 * 28 27 26 30 30 H 1.09003 * 109.47061 * 300.00108 * 1 2 3 31 31 H 1.08998 * 109.47099 * 60.00104 * 1 2 3 32 32 H 1.08994 * 109.47099 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47070 * 305.00048 * 4 2 1 34 34 H 1.09001 * 109.47293 * 65.00207 * 4 2 1 35 35 H 1.09000 * 109.46933 * 300.00037 * 5 4 2 36 36 H 1.09001 * 109.46769 * 59.99791 * 5 4 2 37 37 H 1.09000 * 109.47152 * 299.99800 * 6 5 4 38 38 H 1.09001 * 109.47542 * 60.00162 * 6 5 4 39 39 H 1.09000 * 109.47254 * 299.99938 * 7 6 5 40 40 H 1.09001 * 109.46661 * 60.00431 * 7 6 5 41 41 H 0.97001 * 119.99746 * 359.97438 * 8 7 6 42 42 H 0.97003 * 120.00146 * 180.02562 * 12 11 9 43 43 H 0.97000 * 119.99792 * 264.99726 * 17 2 1 44 44 H 1.08000 * 125.11299 * 0.02562 * 21 20 18 45 45 H 1.08012 * 120.03407 * 0.03170 * 25 24 22 46 46 H 1.07999 * 119.68585 * 179.97438 * 26 25 24 47 47 H 1.08010 * 119.84763 * 180.02562 * 27 26 25 48 48 H 1.07997 * 120.16328 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3137 6 6 4.0749 -1.3350 2.5626 7 6 5.5998 -1.2275 2.6267 8 7 6.0882 -1.9192 3.8223 9 6 7.4303 -1.9557 4.0918 10 1 8.1287 -1.4750 3.4228 11 6 7.8931 -2.6115 5.2243 12 7 7.0420 -3.1978 6.0393 13 14 9.7239 -2.6607 5.5924 14 1 10.2354 -1.2750 5.7460 15 1 9.9559 -3.4167 6.8493 16 1 10.4358 -3.3300 4.4742 17 7 2.0183 -0.6906 -1.1962 18 6 2.1470 -0.0182 -2.3571 19 8 1.8572 1.1622 -2.4119 20 6 2.6425 -0.7093 -3.5551 21 6 3.0107 -2.0191 -3.6483 22 7 3.4111 -2.2936 -4.9131 23 1 3.7165 -3.1613 -5.2209 24 6 3.3286 -1.1635 -5.7003 25 6 3.6181 -0.9113 -7.0374 26 6 3.4305 0.3515 -7.5550 27 6 2.9530 1.3797 -6.7550 28 6 2.6602 1.1498 -5.4287 29 6 2.8451 -0.1221 -4.8923 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6054 -0.2617 2.1369 34 1 1.7517 -1.7715 1.2056 35 1 3.9995 -1.0728 0.4260 36 1 3.8532 0.4371 1.3573 37 1 3.6403 -0.8758 3.4505 38 1 3.7866 -2.3853 2.5185 39 1 6.0341 -1.6869 1.7387 40 1 5.8884 -0.1773 2.6706 41 1 5.4609 -2.3506 4.4233 42 1 7.3654 -3.6557 6.8309 43 1 2.2490 -1.6318 -1.1526 44 1 2.9844 -2.7311 -2.8367 45 1 3.9895 -1.7048 -7.6691 46 1 3.6570 0.5429 -8.5935 47 1 2.8103 2.3649 -7.1741 48 1 2.2890 1.9519 -4.8080 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171703021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:24:56 Heat of formation + Delta-G solvation = 9.283214 kcal Electronic energy + Delta-G solvation = -26583.111769 eV Core-core repulsion = 22830.661210 eV Total energy + Delta-G solvation = -3752.450559 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.74613 -39.55565 -37.24974 -36.82950 -35.19699 -33.24465 -32.45887 -31.43705 -30.31924 -29.82198 -28.91295 -27.41365 -24.37597 -23.56937 -23.26763 -22.13337 -21.91393 -20.78499 -20.61529 -19.97069 -18.47052 -17.01052 -16.94225 -16.54618 -16.09316 -15.74996 -15.32344 -14.93953 -14.71695 -14.48752 -14.40042 -14.09531 -13.87341 -13.69179 -13.47406 -13.14163 -12.97592 -12.90097 -12.82636 -12.28973 -12.03934 -11.96084 -11.72812 -11.42256 -11.28802 -11.23190 -10.96270 -10.78401 -10.67602 -10.41578 -10.27840 -10.02389 -10.00089 -9.94184 -9.64694 -9.13880 -8.84175 -8.63772 -8.09357 -6.89025 -5.74232 -3.02518 0.68242 1.25398 1.75664 2.60558 3.10770 3.25703 3.45292 3.49218 3.50654 3.70075 4.29659 4.41559 4.52522 4.61377 4.70128 4.78554 4.88805 4.95515 5.03335 5.13216 5.24358 5.30838 5.35657 5.41861 5.46846 5.51244 5.56868 5.66074 5.74302 5.79027 5.83080 5.97353 6.00483 6.08493 6.15581 6.19061 6.27674 6.33264 6.33779 6.37735 6.40720 6.48341 6.50163 6.78144 6.91981 6.95829 6.98401 7.46822 7.71628 8.22964 8.45264 9.55823 10.15339 10.49989 11.48783 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.012887 B = 0.002072 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.273288 B =13510.279516 C =14937.463080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 H 0.089 0.911 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.125 4.125 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.239 4.239 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.722 5.722 18 C 0.591 3.409 19 O -0.544 6.544 20 C -0.227 4.227 21 C 0.110 3.890 22 N -0.579 5.579 23 H 0.421 0.579 24 C 0.083 3.917 25 C -0.128 4.128 26 C -0.100 4.100 27 C -0.142 4.142 28 C -0.063 4.063 29 C -0.062 4.062 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.015 0.985 40 H 0.017 0.983 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.396 0.604 44 H 0.180 0.820 45 H 0.121 0.879 46 H 0.126 0.874 47 H 0.125 0.875 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.557 2.544 -26.651 30.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 H 0.107 0.893 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.163 4.163 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.087 0.913 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.374 5.374 18 C 0.379 3.621 19 O -0.422 6.422 20 C -0.238 4.238 21 C -0.023 4.023 22 N -0.180 5.180 23 H 0.258 0.742 24 C -0.022 4.022 25 C -0.149 4.149 26 C -0.119 4.119 27 C -0.161 4.161 28 C -0.081 4.081 29 C -0.067 4.067 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.033 0.967 40 H 0.034 0.966 41 H 0.216 0.784 42 H 0.065 0.935 43 H 0.230 0.770 44 H 0.197 0.803 45 H 0.139 0.861 46 H 0.144 0.856 47 H 0.143 0.857 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.554 3.318 -26.711 30.599 hybrid contribution 1.160 -1.263 0.409 1.763 sum -13.395 2.055 -26.302 29.588 Atomic orbital electron populations 1.22175 0.95480 1.01978 1.02468 1.21019 0.93650 0.97784 0.83671 0.89263 1.21939 0.96836 1.00863 0.96814 1.21519 0.93992 1.01163 0.98535 1.21727 0.97201 1.00208 0.97187 1.20654 0.91054 0.95331 0.90506 1.42387 1.05301 1.64931 1.25272 1.19212 0.83944 1.28329 1.05502 0.91301 1.24751 0.97726 1.01001 0.97734 1.69651 1.32838 1.40733 1.15178 0.86253 0.85127 0.77491 0.77245 1.21254 1.21675 1.21314 1.45929 1.68050 1.13790 1.09588 1.17185 0.76926 0.86094 0.81869 1.90763 1.50958 1.15494 1.84939 1.20080 1.15766 0.93688 0.94272 1.22136 0.96536 0.96516 0.87086 1.41539 1.56667 1.11228 1.08530 0.74187 1.18270 1.04119 0.86525 0.93243 1.20016 1.05244 0.98084 0.91510 1.20833 0.99315 0.92063 0.99731 1.21007 1.01997 0.99369 0.93760 1.20726 0.97230 0.95376 0.94805 1.18749 1.02652 0.93620 0.91651 0.91597 0.92216 0.92600 0.90220 0.91438 0.92157 0.91939 0.92056 0.92194 0.96678 0.96551 0.78356 0.93510 0.76999 0.80324 0.86103 0.85604 0.85723 0.84859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.48 37.16 0.35 -1.13 16 2 C 0.14 1.43 2.57 -67.93 -0.17 1.26 16 3 H 0.09 1.08 7.58 -51.92 -0.39 0.68 16 4 C -0.13 -1.23 4.75 -26.73 -0.13 -1.36 16 5 C -0.11 -1.41 5.10 -26.73 -0.14 -1.54 16 6 C -0.13 -1.98 5.33 -26.73 -0.14 -2.12 16 7 C 0.15 3.14 6.26 -4.04 -0.03 3.12 16 8 N -0.73 -19.24 5.60 -59.90 -0.34 -19.57 16 9 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 10 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 11 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 12 N -0.94 -28.71 13.06 55.49 0.72 -27.98 16 13 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 N -0.72 -6.89 4.52 -55.04 -0.25 -7.14 16 18 C 0.59 7.24 7.76 -12.75 -0.10 7.14 16 19 O -0.54 -8.56 15.82 5.21 0.08 -8.48 16 20 C -0.23 -2.44 6.27 -103.31 -0.65 -3.09 16 21 C 0.11 0.78 11.33 -16.62 -0.19 0.59 16 22 N -0.58 -3.78 5.99 -10.48 -0.06 -3.84 16 23 H 0.42 1.33 8.96 -40.82 -0.37 0.97 16 24 C 0.08 0.77 7.26 -83.96 -0.61 0.16 16 25 C -0.13 -1.00 10.07 -39.43 -0.40 -1.40 16 26 C -0.10 -0.77 10.01 -39.57 -0.40 -1.17 16 27 C -0.14 -1.27 10.03 -39.57 -0.40 -1.66 16 28 C -0.06 -0.71 9.85 -39.37 -0.39 -1.10 16 29 C -0.06 -0.72 6.27 -104.95 -0.66 -1.38 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.72 7.75 -51.93 -0.40 0.32 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.38 10.43 7.67 -40.82 -0.31 10.12 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.40 2.76 7.48 -40.82 -0.31 2.46 16 44 H 0.18 0.60 7.38 -52.49 -0.39 0.22 16 45 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 46 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 47 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 48 H 0.13 1.60 7.45 -52.49 -0.39 1.21 16 LS Contribution 399.71 15.07 6.02 6.02 Total: -1.00 -36.29 399.71 -10.72 -47.01 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -7.60 Total: 7.55 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -4.28 Total: -11.28 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: 0.08 Total: -58.54 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.08 Total: -8.48 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.29 -10.72 -47.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171703021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.293 kcal (2) G-P(sol) polarization free energy of solvation -36.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds