Wall clock time and date at job start Sat Apr 11 2020 02:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46861 * 2 1 4 4 C 1.46502 * 119.99900 * 269.99382 * 3 2 1 5 5 C 1.50698 * 109.47514 * 270.00192 * 4 3 2 6 6 H 1.08002 * 119.99647 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00069 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00451 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99978 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47049 * 59.99836 * 9 7 5 11 11 H 1.48500 * 109.47269 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46797 * 299.99925 * 9 7 5 13 13 C 1.34776 * 120.00243 * 89.99955 * 3 2 1 14 14 O 1.21283 * 120.00185 * 179.97438 * 13 3 2 15 15 C 1.50704 * 119.99809 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.47219 * 180.02562 * 15 13 3 17 17 C 1.47222 * 110.99892 * 293.95402 * 16 15 13 18 18 C 1.53082 * 108.53111 * 167.26496 * 17 16 15 19 19 C 1.50333 * 109.69749 * 49.21258 * 18 17 16 20 20 C 1.31517 * 122.67776 * 343.47031 * 19 18 17 21 21 C 1.47756 * 118.47602 * 180.31206 * 20 19 18 22 22 C 1.39529 * 119.74927 * 185.51140 * 21 20 19 23 23 C 1.38353 * 119.05374 * 179.76938 * 22 21 20 24 24 C 1.38809 * 118.52448 * 0.47689 * 23 22 21 25 25 C 1.38260 * 119.40502 * 359.48055 * 24 23 22 26 26 N 1.31745 * 120.91554 * 0.29867 * 25 24 23 27 27 C 1.46988 * 110.95957 * 171.17421 * 16 15 13 28 28 H 1.08993 * 109.47619 * 299.99740 * 1 2 3 29 29 H 1.08999 * 109.47154 * 60.00364 * 1 2 3 30 30 H 1.09004 * 109.46898 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47481 * 239.99645 * 2 1 3 32 32 H 1.08999 * 109.47154 * 119.99636 * 2 1 3 33 33 H 1.08997 * 109.47067 * 30.00708 * 4 3 2 34 34 H 1.09004 * 109.46794 * 150.00198 * 4 3 2 35 35 H 0.97000 * 120.00288 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.46701 * 60.00412 * 15 13 3 37 37 H 1.08992 * 109.47366 * 300.00706 * 15 13 3 38 38 H 1.09007 * 109.62566 * 47.55585 * 17 16 15 39 39 H 1.08999 * 109.78969 * 287.07811 * 17 16 15 40 40 H 1.08999 * 109.43368 * 289.14552 * 18 17 16 41 41 H 1.08993 * 109.43787 * 169.28520 * 18 17 16 42 42 H 1.08001 * 118.66261 * 163.44543 * 19 18 17 43 43 H 1.08004 * 120.47215 * 359.97438 * 22 21 20 44 44 H 1.08000 * 120.73495 * 180.25788 * 23 22 21 45 45 H 1.08007 * 120.29398 * 179.75307 * 24 23 22 46 46 H 1.08000 * 119.54659 * 180.27855 * 25 24 23 47 47 H 1.08998 * 109.53630 * 54.52776 * 27 16 15 48 48 H 1.08996 * 109.23091 * 294.94907 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1494 2.3905 -2.8774 8 7 3.3495 3.1265 -3.6176 9 14 5.9135 2.0964 -3.4169 10 1 6.1403 0.6398 -3.5952 11 1 6.1611 2.7965 -4.7029 12 1 6.8413 2.6188 -2.3818 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1600 1.1672 15 6 1.9912 1.3064 2.4723 16 7 2.3088 2.2066 3.5889 17 6 3.7487 2.5111 3.6278 18 6 3.9727 3.6814 4.5889 19 6 3.2623 3.4144 5.8866 20 6 2.3243 2.5006 6.0077 21 6 1.6820 2.3207 7.3262 22 6 0.7675 1.2840 7.5152 23 6 0.1783 1.1258 8.7570 24 6 0.5143 2.0154 9.7682 25 6 1.4290 3.0201 9.5123 26 7 1.9798 3.1469 8.3223 27 6 1.8800 1.6271 4.8698 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5817 1.6877 -2.0284 34 1 2.0955 3.1410 -1.1384 35 1 3.6758 3.5176 -4.4431 36 1 2.6211 0.4188 2.5302 37 1 0.9432 1.0125 2.5298 38 1 4.0920 2.7857 2.6303 39 1 4.3010 1.6390 3.9778 40 1 3.5822 4.5963 4.1433 41 1 5.0400 3.7972 4.7768 42 1 3.5336 3.9965 6.7549 43 1 0.5256 0.6124 6.7046 44 1 -0.5300 0.3301 8.9345 45 1 0.0684 1.9208 10.7474 46 1 1.6954 3.7107 10.2987 47 1 2.3158 0.6347 4.9850 48 1 0.7932 1.5450 4.8808 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000559637708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:25:01 Heat of formation + Delta-G solvation = 28.349442 kcal Electronic energy + Delta-G solvation = -27820.936984 eV Core-core repulsion = 24069.313199 eV Total energy + Delta-G solvation = -3751.623785 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.51493 -39.49850 -38.05232 -35.26560 -34.08964 -32.80111 -32.63351 -32.17851 -30.08725 -29.45452 -28.33927 -26.42202 -24.48199 -24.20228 -23.04924 -22.83586 -22.39229 -21.52879 -18.33452 -18.15798 -17.24423 -16.56415 -16.38754 -16.18317 -16.03093 -15.34093 -15.30555 -15.02441 -14.59286 -14.33540 -14.02054 -13.85300 -13.53931 -13.46216 -13.34770 -13.18106 -12.93262 -12.66899 -12.40024 -12.12780 -11.98207 -11.82735 -11.65244 -11.55390 -11.20043 -10.91903 -10.91050 -10.68481 -10.55216 -10.45773 -10.27404 -10.09019 -9.88307 -9.67204 -9.62676 -8.83987 -8.41857 -8.36958 -8.14447 -7.61686 -6.02619 -4.07466 0.60103 1.02570 2.29102 3.32029 3.36781 3.38323 3.48163 3.54630 3.73977 4.03296 4.25957 4.43046 4.46096 4.57784 4.78312 4.85132 4.91472 5.02876 5.12118 5.26085 5.30697 5.31486 5.34975 5.38211 5.41055 5.44480 5.51945 5.53804 5.66402 5.69994 5.74520 5.81037 5.88111 5.94207 6.03239 6.19412 6.24011 6.25668 6.43947 6.47808 6.50014 6.77489 7.01235 7.11907 7.20602 7.48688 7.58850 7.75631 7.94092 8.25719 8.47166 8.92456 9.16293 9.57658 11.05290 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.020427 B = 0.002546 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.377432 B =10993.311366 C =11945.978911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.522 6.522 15 C 0.035 3.965 16 N -0.511 5.511 17 C 0.045 3.955 18 C -0.090 4.090 19 C -0.074 4.074 20 C -0.118 4.118 21 C 0.180 3.820 22 C -0.170 4.170 23 C -0.071 4.071 24 C -0.188 4.188 25 C 0.106 3.894 26 N -0.486 5.486 27 C 0.099 3.901 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.031 0.969 34 H 0.043 0.957 35 H 0.264 0.736 36 H 0.057 0.943 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.030 0.970 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.123 0.877 43 H 0.136 0.864 44 H 0.133 0.867 45 H 0.132 0.868 46 H 0.155 0.845 47 H 0.044 0.956 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.459 -7.409 23.451 25.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.333 5.333 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.073 0.927 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.293 3.707 14 O -0.398 6.398 15 C -0.096 4.096 16 N -0.235 5.235 17 C -0.083 4.083 18 C -0.127 4.127 19 C -0.094 4.094 20 C -0.119 4.119 21 C 0.045 3.955 22 C -0.190 4.190 23 C -0.097 4.097 24 C -0.208 4.208 25 C -0.052 4.052 26 N -0.195 5.195 27 C -0.029 4.029 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.115 0.885 38 H 0.122 0.878 39 H 0.048 0.952 40 H 0.112 0.888 41 H 0.097 0.903 42 H 0.141 0.859 43 H 0.154 0.846 44 H 0.151 0.849 45 H 0.150 0.850 46 H 0.172 0.828 47 H 0.062 0.938 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.921 -5.572 23.032 24.425 hybrid contribution 0.591 -1.738 0.019 1.836 sum -5.330 -7.310 23.051 24.763 Atomic orbital electron populations 1.22225 0.96824 1.01317 1.02401 1.21400 0.93503 0.84364 1.02514 1.48264 1.64142 1.13162 1.07698 1.19238 0.96108 0.93679 0.78080 1.21383 0.96952 1.31851 1.06237 0.92654 1.24928 0.97758 0.94971 0.96427 1.69919 1.35677 1.33373 1.14372 0.86582 0.84925 0.78190 0.77847 1.20324 1.21198 1.20195 1.20061 0.78928 0.87082 0.84645 1.90649 1.44780 1.17646 1.86751 1.22085 1.02352 0.94257 0.90902 1.62133 1.17669 1.42821 1.00849 1.22393 0.87053 0.96561 1.02254 1.20641 0.99648 1.00058 0.92343 1.22970 0.93530 0.94292 0.98587 1.19354 0.99916 1.01663 0.90982 1.19991 0.92561 0.90408 0.92588 1.22160 0.98666 0.99767 0.98408 1.21530 0.97544 0.97951 0.92687 1.22134 1.00699 0.97417 1.00532 1.22702 0.92648 0.96064 0.93808 1.67684 1.25182 1.26341 1.00325 1.20788 1.00517 0.94499 0.87064 0.93044 0.91996 0.92264 0.89996 0.91994 0.95124 0.93867 0.92682 0.92479 0.88498 0.87772 0.95191 0.88787 0.90266 0.85906 0.84615 0.84867 0.84982 0.82785 0.93829 0.89851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.24 37.16 0.38 -1.82 16 2 C 0.11 1.66 5.93 -4.04 -0.02 1.63 16 3 N -0.60 -12.43 2.46 -175.06 -0.43 -12.86 16 4 C 0.25 6.43 5.16 -5.19 -0.03 6.40 16 5 C -0.53 -14.75 9.39 -34.44 -0.32 -15.07 16 6 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 9 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 13 C 0.51 10.37 7.28 -10.98 -0.08 10.29 16 14 O -0.52 -12.91 14.01 5.56 0.08 -12.84 16 15 C 0.04 0.53 3.98 -4.97 -0.02 0.51 16 16 N -0.51 -7.75 4.46 -237.43 -1.06 -8.81 16 17 C 0.04 0.69 5.17 -3.61 -0.02 0.67 16 18 C -0.09 -1.22 6.32 -28.02 -0.18 -1.39 16 19 C -0.07 -0.96 9.51 -36.33 -0.35 -1.30 16 20 C -0.12 -1.50 5.86 -102.83 -0.60 -2.10 16 21 C 0.18 2.14 6.68 -83.08 -0.56 1.59 16 22 C -0.17 -1.62 9.33 -39.06 -0.36 -1.98 16 23 C -0.07 -0.55 10.16 -39.33 -0.40 -0.95 16 24 C -0.19 -1.41 10.11 -39.36 -0.40 -1.81 16 25 C 0.11 0.96 11.17 -17.58 -0.20 0.77 16 26 N -0.49 -5.83 9.12 -9.88 -0.09 -5.92 16 27 C 0.10 1.20 4.31 -5.18 -0.02 1.18 16 28 H 0.05 0.64 7.22 -51.93 -0.37 0.26 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 32 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 33 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.06 0.77 7.38 -51.93 -0.38 0.38 16 37 H 0.10 1.23 7.13 -51.93 -0.37 0.86 16 38 H 0.10 1.95 5.81 -51.92 -0.30 1.65 16 39 H 0.03 0.42 8.08 -51.93 -0.42 0.00 16 40 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.12 1.55 7.13 -52.49 -0.37 1.17 16 43 H 0.14 1.05 6.66 -52.48 -0.35 0.70 16 44 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 45 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 46 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 47 H 0.04 0.47 8.13 -51.93 -0.42 0.05 16 48 H 0.08 0.90 7.27 -51.93 -0.38 0.53 16 LS Contribution 387.93 15.07 5.85 5.85 Total: -1.00 -34.08 387.93 -10.65 -44.73 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -7.44 Total: 0.67 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -3.27 Total: -1.76 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.84 Total: -53.41 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.08 Total: -12.84 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.08 -10.65 -44.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559637708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.078 kcal (2) G-P(sol) polarization free energy of solvation -34.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds