Wall clock time and date at job start Sat Apr 11 2020 02:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46861 * 2 1 4 4 C 1.46502 * 119.99900 * 269.99382 * 3 2 1 5 5 C 1.50698 * 109.47514 * 270.00192 * 4 3 2 6 6 H 1.08002 * 119.99647 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00069 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00451 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99978 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47049 * 59.99836 * 9 7 5 11 11 H 1.48500 * 109.47269 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46797 * 299.99925 * 9 7 5 13 13 C 1.34776 * 120.00243 * 89.99955 * 3 2 1 14 14 O 1.21283 * 120.00185 * 179.97438 * 13 3 2 15 15 C 1.50704 * 119.99809 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.47219 * 180.02562 * 15 13 3 17 17 C 1.47222 * 110.99892 * 293.95402 * 16 15 13 18 18 C 1.53082 * 108.53111 * 167.26496 * 17 16 15 19 19 C 1.50333 * 109.69749 * 49.21258 * 18 17 16 20 20 C 1.31517 * 122.67776 * 343.47031 * 19 18 17 21 21 C 1.47756 * 118.47602 * 180.31206 * 20 19 18 22 22 C 1.39529 * 119.74927 * 185.51140 * 21 20 19 23 23 C 1.38353 * 119.05374 * 179.76938 * 22 21 20 24 24 C 1.38809 * 118.52448 * 0.47689 * 23 22 21 25 25 C 1.38260 * 119.40502 * 359.48055 * 24 23 22 26 26 N 1.31745 * 120.91554 * 0.29867 * 25 24 23 27 27 C 1.46988 * 110.95957 * 171.17421 * 16 15 13 28 28 H 1.08993 * 109.47619 * 299.99740 * 1 2 3 29 29 H 1.08999 * 109.47154 * 60.00364 * 1 2 3 30 30 H 1.09004 * 109.46898 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47481 * 239.99645 * 2 1 3 32 32 H 1.08999 * 109.47154 * 119.99636 * 2 1 3 33 33 H 1.08997 * 109.47067 * 30.00708 * 4 3 2 34 34 H 1.09004 * 109.46794 * 150.00198 * 4 3 2 35 35 H 0.97000 * 120.00288 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.46701 * 60.00412 * 15 13 3 37 37 H 1.08992 * 109.47366 * 300.00706 * 15 13 3 38 38 H 1.09007 * 109.62566 * 47.55585 * 17 16 15 39 39 H 1.08999 * 109.78969 * 287.07811 * 17 16 15 40 40 H 1.08999 * 109.43368 * 289.14552 * 18 17 16 41 41 H 1.08993 * 109.43787 * 169.28520 * 18 17 16 42 42 H 1.08001 * 118.66261 * 163.44543 * 19 18 17 43 43 H 1.08004 * 120.47215 * 359.97438 * 22 21 20 44 44 H 1.08000 * 120.73495 * 180.25788 * 23 22 21 45 45 H 1.08007 * 120.29398 * 179.75307 * 24 23 22 46 46 H 1.08000 * 119.54659 * 180.27855 * 25 24 23 47 47 H 1.08998 * 109.53630 * 54.52776 * 27 16 15 48 48 H 1.08996 * 109.23091 * 294.94907 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1494 2.3905 -2.8774 8 7 3.3495 3.1265 -3.6176 9 14 5.9135 2.0964 -3.4169 10 1 6.1403 0.6398 -3.5952 11 1 6.1611 2.7965 -4.7029 12 1 6.8413 2.6188 -2.3818 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1600 1.1672 15 6 1.9912 1.3064 2.4723 16 7 2.3088 2.2066 3.5889 17 6 3.7487 2.5111 3.6278 18 6 3.9727 3.6814 4.5889 19 6 3.2623 3.4144 5.8866 20 6 2.3243 2.5006 6.0077 21 6 1.6820 2.3207 7.3262 22 6 0.7675 1.2840 7.5152 23 6 0.1783 1.1258 8.7570 24 6 0.5143 2.0154 9.7682 25 6 1.4290 3.0201 9.5123 26 7 1.9798 3.1469 8.3223 27 6 1.8800 1.6271 4.8698 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5817 1.6877 -2.0284 34 1 2.0955 3.1410 -1.1384 35 1 3.6758 3.5176 -4.4431 36 1 2.6211 0.4188 2.5302 37 1 0.9432 1.0125 2.5298 38 1 4.0920 2.7857 2.6303 39 1 4.3010 1.6390 3.9778 40 1 3.5822 4.5963 4.1433 41 1 5.0400 3.7972 4.7768 42 1 3.5336 3.9965 6.7549 43 1 0.5256 0.6124 6.7046 44 1 -0.5300 0.3301 8.9345 45 1 0.0684 1.9208 10.7474 46 1 1.6954 3.7107 10.2987 47 1 2.3158 0.6347 4.9850 48 1 0.7932 1.5450 4.8808 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000559637708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:25:00 Heat of formation + Delta-G solvation = 6.425198 kcal Electronic energy + Delta-G solvation = -27821.887691 eV Core-core repulsion = 24069.313199 eV Total energy + Delta-G solvation = -3752.574492 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.34589 -40.80608 -39.26350 -36.87727 -35.19624 -34.78704 -33.33585 -33.14352 -31.59312 -30.32902 -29.81147 -28.05055 -25.53373 -25.18916 -24.59736 -23.98490 -23.36220 -22.68499 -19.84985 -19.09401 -18.58981 -18.10365 -17.85569 -17.22432 -16.97297 -16.64615 -16.48110 -16.12436 -16.11841 -15.49759 -15.23670 -14.89917 -14.66358 -14.56657 -14.40639 -14.33537 -14.13476 -13.84993 -13.60424 -13.44973 -13.27608 -13.20865 -13.05568 -12.85630 -12.63310 -12.52120 -12.47797 -12.14401 -12.02406 -11.80415 -11.72109 -11.56909 -10.96179 -10.64370 -10.63127 -10.43763 -10.36401 -9.38065 -9.31949 -9.14905 -8.20645 -6.35575 -0.12671 0.40431 1.36137 1.40489 1.44030 1.47661 1.91379 2.22218 2.41144 2.90059 3.04148 3.08476 3.31825 3.63826 3.74326 3.93723 4.07977 4.11583 4.13111 4.22023 4.26653 4.30861 4.35293 4.35824 4.43504 4.47603 4.53289 4.55768 4.69306 4.71416 4.82284 4.91203 4.94823 5.00055 5.03773 5.08743 5.15297 5.24118 5.24838 5.30396 5.41599 5.44589 5.60456 5.81217 5.86113 5.89616 5.97470 6.09075 6.11433 6.72849 6.87688 7.07203 7.30870 7.58348 8.85959 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.020427 B = 0.002546 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.377432 B =10993.311366 C =11945.978911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.265 3.735 5 C -0.539 4.539 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.260 1.260 11 H -0.280 1.280 12 H -0.278 1.278 13 C 0.496 3.504 14 O -0.578 6.578 15 C 0.051 3.949 16 N -0.534 5.534 17 C 0.050 3.950 18 C -0.083 4.083 19 C -0.096 4.096 20 C -0.112 4.112 21 C 0.148 3.852 22 C -0.172 4.172 23 C -0.073 4.073 24 C -0.177 4.177 25 C 0.087 3.913 26 N -0.517 5.517 27 C 0.102 3.898 28 H 0.061 0.939 29 H 0.035 0.965 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.020 0.980 34 H -0.007 1.007 35 H 0.266 0.734 36 H 0.084 0.916 37 H 0.130 0.870 38 H 0.062 0.938 39 H 0.045 0.955 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.120 0.880 43 H 0.154 0.846 44 H 0.166 0.834 45 H 0.164 0.836 46 H 0.174 0.826 47 H 0.067 0.933 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.398 -10.700 26.086 29.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.338 5.338 4 C 0.143 3.857 5 C -0.578 4.578 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.790 3.210 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.203 1.203 13 C 0.285 3.715 14 O -0.458 6.458 15 C -0.080 4.080 16 N -0.258 5.258 17 C -0.078 4.078 18 C -0.120 4.120 19 C -0.116 4.116 20 C -0.113 4.113 21 C 0.012 3.988 22 C -0.191 4.191 23 C -0.099 4.099 24 C -0.197 4.197 25 C -0.071 4.071 26 N -0.227 5.227 27 C -0.025 4.025 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.038 0.962 34 H 0.012 0.988 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.148 0.852 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.138 0.862 43 H 0.172 0.828 44 H 0.184 0.816 45 H 0.182 0.818 46 H 0.191 0.809 47 H 0.085 0.915 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.885 -8.917 25.688 28.050 hybrid contribution 0.778 -0.717 -0.682 1.259 sum -6.107 -9.634 25.006 27.485 Atomic orbital electron populations 1.22156 0.94586 1.03481 1.01680 1.21744 0.95318 0.81351 1.03854 1.48290 1.64322 1.15102 1.06116 1.18641 0.95148 0.91403 0.80489 1.21664 0.97870 1.31816 1.06412 0.92889 1.25864 1.02329 0.94565 0.96519 1.70049 1.37792 1.34245 1.14828 0.85493 0.79132 0.79021 0.77321 1.18396 1.20471 1.20341 1.21136 0.77452 0.86704 0.86241 1.90626 1.47075 1.20388 1.87700 1.22005 1.04723 0.93851 0.87403 1.62063 1.17369 1.44034 1.02360 1.22226 0.87777 0.97581 1.00212 1.20527 1.00578 0.98451 0.92490 1.22818 0.94982 0.95860 0.97905 1.19606 0.98897 1.00850 0.91956 1.20009 0.94392 0.92111 0.92263 1.22408 0.97804 0.99072 0.99847 1.21974 0.97487 0.98549 0.91886 1.22541 0.99203 0.96025 1.01911 1.23168 0.93174 0.97279 0.93446 1.67605 1.26393 1.27265 1.01448 1.20878 1.01623 0.95036 0.84951 0.91964 0.94560 0.88548 0.91155 0.88116 0.96235 0.98846 0.92481 0.89846 0.85230 0.91902 0.93702 0.91284 0.89014 0.86167 0.82808 0.81636 0.81818 0.80892 0.91513 0.87992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.81 10.24 71.98 0.74 -3.08 16 2 C 0.10 2.93 5.93 86.38 0.51 3.44 16 3 N -0.61 -25.55 2.46 -826.15 -2.03 -27.58 16 4 C 0.26 14.48 5.16 85.63 0.44 14.92 16 5 C -0.54 -31.31 9.39 25.60 0.24 -31.07 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.35 5.46 84.65 0.46 0.81 16 8 N -0.93 -57.11 13.29 21.44 0.28 -56.82 16 9 Si 0.97 45.35 29.54 68.60 2.03 47.37 16 10 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 C 0.50 20.65 7.28 87.66 0.64 21.29 16 14 O -0.58 -30.38 14.01 -3.04 -0.04 -30.42 16 15 C 0.05 1.41 3.98 85.56 0.34 1.75 16 16 N -0.53 -15.68 4.46 -905.11 -4.04 -19.72 16 17 C 0.05 1.56 5.17 86.27 0.45 2.01 16 18 C -0.08 -2.39 6.32 29.76 0.19 -2.20 16 19 C -0.10 -2.54 9.51 25.04 0.24 -2.30 16 20 C -0.11 -2.73 5.86 -18.04 -0.11 -2.84 16 21 C 0.15 3.29 6.68 41.83 0.28 3.57 16 22 C -0.17 -2.72 9.33 22.61 0.21 -2.51 16 23 C -0.07 -0.85 10.16 22.43 0.23 -0.62 16 24 C -0.18 -2.04 10.11 22.41 0.23 -1.82 16 25 C 0.09 1.42 11.17 84.71 0.95 2.37 16 26 N -0.52 -11.99 9.12 -185.16 -1.69 -13.68 16 27 C 0.10 2.20 4.31 85.38 0.37 2.57 16 28 H 0.06 1.34 7.22 -2.39 -0.02 1.33 16 29 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 32 H 0.10 2.19 6.44 -2.39 -0.02 2.18 16 33 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 34 H -0.01 -0.42 7.42 -2.38 -0.02 -0.44 16 35 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 36 H 0.08 1.92 7.38 -2.39 -0.02 1.90 16 37 H 0.13 2.77 7.13 -2.39 -0.02 2.75 16 38 H 0.06 2.50 5.81 -2.38 -0.01 2.49 16 39 H 0.04 1.23 8.08 -2.39 -0.02 1.21 16 40 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.12 3.18 7.13 -2.91 -0.02 3.16 16 43 H 0.15 1.73 6.66 -2.91 -0.02 1.71 16 44 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16 45 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 46 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 47 H 0.07 1.17 8.13 -2.39 -0.02 1.15 16 48 H 0.10 1.83 7.27 -2.39 -0.02 1.81 16 Total: -1.00 -80.75 387.93 1.86 -78.89 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.95 Total: 15.66 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: 6.40 Total: 6.29 kcal Atomic # 7 Polarization: -110.33 SS G_CDS: -7.47 Total: -117.80 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -0.04 Total: -30.42 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -80.75 1.86 -78.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559637708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.316 kcal (2) G-P(sol) polarization free energy of solvation -80.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds