Wall clock time and date at job start Sat Apr 11 2020 02:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46436 * 110.99867 * 2 1 4 4 C 1.53373 * 108.66018 * 287.85286 * 3 2 1 5 5 C 1.53044 * 107.94008 * 291.78558 * 4 3 2 6 6 H 1.08996 * 109.40594 * 287.27633 * 5 4 3 7 7 C 1.50701 * 109.44080 * 167.37272 * 5 4 3 8 8 O 1.21286 * 119.99844 * 323.37062 * 7 5 4 9 9 N 1.34772 * 119.99940 * 143.36854 * 7 5 4 10 10 C 1.46505 * 119.99991 * 184.97659 * 9 7 5 11 11 H 1.09001 * 112.90539 * 27.05538 * 10 9 7 12 12 C 1.53775 * 113.61377 * 158.30232 * 10 9 7 13 13 C 1.53781 * 87.08089 * 89.11983 * 12 10 9 14 14 H 1.09004 * 113.61575 * 140.06783 * 13 12 10 15 15 N 1.46504 * 113.61196 * 270.88479 * 13 12 10 16 16 C 1.36943 * 119.99659 * 274.62383 * 15 13 12 17 17 H 1.08001 * 119.99937 * 0.02562 * 16 15 13 18 18 C 1.38815 * 119.99434 * 180.02562 * 16 15 13 19 19 N 1.31615 * 120.00463 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99554 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46753 * 89.99967 * 20 18 16 22 22 H 1.48500 * 109.47093 * 210.00095 * 20 18 16 23 23 H 1.48504 * 109.47204 * 330.00392 * 20 18 16 24 24 C 1.53778 * 87.08177 * 25.43175 * 13 12 10 25 25 C 1.50798 * 109.65962 * 47.31712 * 5 4 3 26 26 C 1.38612 * 118.13559 * 164.30247 * 25 5 4 27 27 C 1.38058 * 120.48907 * 179.72926 * 26 25 5 28 28 C 1.38302 * 119.89028 * 359.96404 * 27 26 25 29 29 C 1.37804 * 119.95501 * 0.13596 * 28 27 26 30 30 C 1.38381 * 122.00716 * 344.25415 * 25 5 4 31 31 H 1.09001 * 109.46901 * 182.77106 * 1 2 3 32 32 H 1.09000 * 109.47229 * 302.76560 * 1 2 3 33 33 H 1.08995 * 109.47685 * 62.76585 * 1 2 3 34 34 H 1.08995 * 109.60151 * 47.60404 * 3 2 1 35 35 H 1.08998 * 109.60307 * 168.10107 * 3 2 1 36 36 H 1.09005 * 109.76369 * 172.18233 * 4 3 2 37 37 H 1.09001 * 109.77374 * 51.39897 * 4 3 2 38 38 H 0.96998 * 119.99972 * 4.97754 * 9 7 5 39 39 H 1.08999 * 113.61928 * 334.56817 * 12 10 9 40 40 H 1.09007 * 113.61670 * 203.66372 * 12 10 9 41 41 H 0.96991 * 119.99795 * 94.62681 * 15 13 12 42 42 H 0.96994 * 119.99906 * 180.02562 * 19 18 16 43 43 H 1.09001 * 113.61461 * 89.11263 * 24 13 12 44 44 H 1.08998 * 113.61731 * 219.93729 * 24 13 12 45 45 H 1.07995 * 119.75733 * 359.71493 * 26 25 5 46 46 H 1.08003 * 120.05305 * 179.97438 * 27 26 25 47 47 H 1.08001 * 120.02677 * 180.12073 * 28 27 26 48 48 H 1.08002 * 119.79942 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9937 1.3671 0.0000 4 6 1.7537 1.9849 -1.3831 5 6 2.6484 1.2546 -2.3873 6 1 3.6849 1.5554 -2.2345 7 6 2.2242 1.6109 -3.7888 8 8 1.0492 1.7671 -4.0455 9 7 3.1506 1.7560 -4.7569 10 6 2.7505 2.2084 -6.0917 11 1 1.8492 2.8212 -6.0795 12 6 3.9022 2.8226 -6.9048 13 6 4.1947 1.4020 -7.4157 14 1 4.4607 1.3640 -8.4721 15 7 5.1254 0.6533 -6.5674 16 6 6.4762 0.7929 -6.7438 17 1 6.8554 1.4551 -7.5081 18 6 7.3580 0.0831 -5.9404 19 7 6.8959 -0.7243 -5.0094 20 14 9.2006 0.2729 -6.1815 21 1 9.7005 1.3788 -5.3257 22 1 9.8820 -0.9916 -5.8046 23 1 9.4842 0.5825 -7.6060 24 6 2.7161 1.0828 -7.1389 25 6 2.5235 -0.2350 -2.1886 26 6 2.9850 -1.0696 -3.1945 27 6 2.8997 -2.4410 -3.0609 28 6 2.3508 -2.9892 -1.9159 29 6 1.8880 -2.1659 -0.9125 30 6 1.9685 -0.7781 -1.0432 31 1 -0.3633 -1.0265 0.0497 32 1 -0.3634 0.5562 0.8641 33 1 -0.3634 0.4702 -0.9137 34 1 1.4784 1.9566 0.7583 35 1 3.0628 1.3485 0.2117 36 1 2.0101 3.0442 -1.3632 37 1 0.7077 1.8633 -1.6648 38 1 4.0822 1.5610 -4.5699 39 1 4.6993 3.2376 -6.2881 40 1 3.5693 3.5073 -7.6850 41 1 4.7848 0.0588 -5.8808 42 1 7.5121 -1.2200 -4.4478 43 1 2.0588 1.2918 -7.9830 44 1 2.5555 0.0926 -6.7125 45 1 3.4142 -0.6439 -4.0894 46 1 3.2611 -3.0848 -3.8493 47 1 2.2848 -4.0618 -1.8083 48 1 1.4595 -2.5966 -0.0196 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022224921.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:26:47 Heat of formation + Delta-G solvation = 33.965397 kcal Electronic energy + Delta-G solvation = -29451.854411 eV Core-core repulsion = 25700.474152 eV Total energy + Delta-G solvation = -3751.380259 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.94313 -39.50809 -37.86474 -36.84218 -33.81326 -33.65393 -32.40912 -30.28777 -29.88647 -29.72699 -27.39985 -25.27583 -24.88703 -24.21620 -23.21408 -22.69502 -21.78443 -20.23941 -19.33246 -18.68860 -17.48269 -17.09452 -16.56901 -16.11828 -15.64899 -15.54828 -14.82035 -14.73614 -14.44839 -14.29179 -14.07334 -13.81071 -13.63830 -13.32258 -13.21304 -12.99908 -12.77786 -12.33943 -12.11769 -12.08029 -11.94346 -11.86071 -11.72356 -11.45266 -11.18488 -10.95852 -10.86393 -10.81996 -10.57778 -10.36879 -10.24724 -9.84218 -9.66357 -9.58937 -9.16981 -8.97183 -8.57130 -8.48829 -7.81153 -7.09417 -5.89120 -3.19111 1.50985 1.62907 2.88781 3.36484 3.43021 3.44234 3.48602 3.75475 4.04003 4.49073 4.63578 4.75364 4.84661 4.99233 5.10123 5.20146 5.24513 5.28719 5.29728 5.36515 5.41467 5.42691 5.46952 5.49719 5.61903 5.67919 5.71186 5.72674 5.75292 5.77708 5.91930 5.99484 6.10775 6.16288 6.24307 6.31420 6.34035 6.44931 6.57852 6.63234 6.65156 6.82762 6.85008 6.91705 7.03681 7.08324 7.46975 7.63830 7.95619 8.29598 8.56273 9.40782 9.94931 10.30288 11.32545 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.011892 B = 0.004353 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.977135 B = 6430.302583 C = 7540.431188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.502 5.502 3 C 0.057 3.943 4 C -0.143 4.143 5 C -0.064 4.064 6 H 0.101 0.899 7 C 0.527 3.473 8 O -0.549 6.549 9 N -0.699 5.699 10 C 0.127 3.873 11 H 0.087 0.913 12 C -0.179 4.179 13 C 0.162 3.838 14 H 0.052 0.948 15 N -0.709 5.709 16 C -0.245 4.245 17 H 0.072 0.928 18 C -0.008 4.008 19 N -0.928 5.928 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.164 4.164 25 C -0.106 4.106 26 C -0.084 4.084 27 C -0.122 4.122 28 C -0.108 4.108 29 C -0.127 4.127 30 C 0.112 3.888 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.039 0.961 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.415 0.585 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.383 0.617 42 H 0.257 0.743 43 H 0.086 0.914 44 H 0.067 0.933 45 H 0.129 0.871 46 H 0.125 0.875 47 H 0.121 0.879 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.568 2.206 8.010 14.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.218 5.218 3 C -0.070 4.070 4 C -0.182 4.182 5 C -0.085 4.085 6 H 0.119 0.881 7 C 0.312 3.688 8 O -0.427 6.427 9 N -0.352 5.352 10 C 0.021 3.979 11 H 0.105 0.895 12 C -0.220 4.220 13 C 0.051 3.949 14 H 0.070 0.930 15 N -0.351 5.351 16 C -0.376 4.376 17 H 0.090 0.910 18 C -0.204 4.204 19 N -0.576 5.576 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.203 4.203 25 C -0.109 4.109 26 C -0.103 4.103 27 C -0.141 4.141 28 C -0.127 4.127 29 C -0.147 4.147 30 C 0.016 3.984 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.255 0.745 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.218 0.782 42 H 0.067 0.933 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.147 0.853 46 H 0.143 0.857 47 H 0.139 0.861 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.075 2.163 8.243 14.779 hybrid contribution 1.388 0.131 -0.552 1.499 sum -10.687 2.294 7.691 13.365 Atomic orbital electron populations 1.22482 0.85432 1.02702 1.01241 1.58770 1.08192 1.13009 1.41841 1.22238 1.01559 0.87233 0.96012 1.22119 1.01068 0.99919 0.95120 1.20205 1.01912 0.93243 0.93145 0.88053 1.20279 0.85933 0.76173 0.86382 1.90630 1.17675 1.51336 1.83082 1.46064 1.12025 1.66902 1.10228 1.21708 0.98131 0.96423 0.81608 0.89544 1.24057 0.97848 1.00443 0.99650 1.21212 0.88534 0.90461 0.94720 0.92989 1.42241 1.02105 1.50864 1.39903 1.19213 0.82138 1.21539 1.14721 0.90985 1.24725 0.97956 0.99239 0.98494 1.69620 1.33709 1.31120 1.23123 0.86205 0.85502 0.76954 0.77569 1.21711 1.21769 1.20784 1.23707 0.98359 0.99325 0.98902 1.19419 1.03959 0.93374 0.94174 1.21201 0.96890 0.93785 0.98405 1.21091 0.99727 0.95060 0.98219 1.20983 0.98453 0.99449 0.93771 1.20897 1.02893 0.91511 0.99381 1.18344 0.98879 0.92522 0.88671 0.91072 0.90993 0.94290 0.89683 0.89828 0.90417 0.89763 0.74537 0.90656 0.90136 0.78200 0.93300 0.89557 0.91382 0.85326 0.85722 0.86081 0.85985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.22 60.06 0.55 0.84 16 2 N -0.50 -6.31 4.75 -179.13 -0.85 -7.16 16 3 C 0.06 0.64 5.82 -3.88 -0.02 0.62 16 4 C -0.14 -1.83 5.21 -26.52 -0.14 -1.97 16 5 C -0.06 -0.97 2.66 -92.85 -0.25 -1.22 16 6 H 0.10 1.50 8.12 -51.93 -0.42 1.08 16 7 C 0.53 9.13 5.80 -10.99 -0.06 9.06 16 8 O -0.55 -10.85 15.76 5.55 0.09 -10.77 16 9 N -0.70 -12.09 4.27 -53.02 -0.23 -12.32 16 10 C 0.13 2.11 4.24 -67.12 -0.28 1.83 16 11 H 0.09 1.43 7.61 -51.93 -0.40 1.03 16 12 C -0.18 -2.95 7.61 -25.92 -0.20 -3.14 16 13 C 0.16 3.05 4.53 -67.12 -0.30 2.74 16 14 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 15 N -0.71 -16.21 4.39 -52.63 -0.23 -16.44 16 16 C -0.25 -6.30 9.99 -15.06 -0.15 -6.45 16 17 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 18 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 19 N -0.93 -25.64 13.06 55.49 0.72 -24.91 16 20 Si 0.91 21.30 29.55 -169.99 -5.02 16.28 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C -0.16 -2.73 7.57 -25.92 -0.20 -2.93 16 25 C -0.11 -1.72 5.40 -104.38 -0.56 -2.28 16 26 C -0.08 -1.47 9.07 -39.51 -0.36 -1.83 16 27 C -0.12 -1.95 10.05 -39.62 -0.40 -2.35 16 28 C -0.11 -1.49 10.03 -39.72 -0.40 -1.89 16 29 C -0.13 -1.74 9.29 -39.22 -0.36 -2.11 16 30 C 0.11 1.65 5.12 -83.85 -0.43 1.22 16 31 H 0.07 0.71 7.70 -51.93 -0.40 0.31 16 32 H 0.07 0.61 8.05 -51.93 -0.42 0.19 16 33 H 0.04 0.47 6.60 -51.93 -0.34 0.12 16 34 H 0.08 0.76 7.98 -51.93 -0.41 0.35 16 35 H 0.08 0.96 8.11 -51.93 -0.42 0.54 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 1.20 5.78 -51.93 -0.30 0.90 16 38 H 0.42 7.76 7.12 -40.82 -0.29 7.47 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.38 9.17 6.87 -40.82 -0.28 8.89 16 42 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.07 1.24 8.13 -51.93 -0.42 0.81 16 45 H 0.13 2.46 6.65 -52.49 -0.35 2.11 16 46 H 0.12 1.90 8.06 -52.48 -0.42 1.47 16 47 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 48 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 379.98 15.07 5.73 5.73 Total: -1.00 -29.24 379.98 -10.84 -40.08 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: -7.38 Total: 19.66 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -3.66 Total: -10.16 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: -0.58 Total: -60.82 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.24 -10.84 -40.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022224921.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.044 kcal (2) G-P(sol) polarization free energy of solvation -29.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds