Wall clock time and date at job start Sat Apr 11 2020 02:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46436 * 110.99867 * 2 1 4 4 C 1.53373 * 108.66018 * 287.85286 * 3 2 1 5 5 C 1.53044 * 107.94008 * 291.78558 * 4 3 2 6 6 H 1.08996 * 109.40594 * 287.27633 * 5 4 3 7 7 C 1.50701 * 109.44080 * 167.37272 * 5 4 3 8 8 O 1.21286 * 119.99844 * 323.37062 * 7 5 4 9 9 N 1.34772 * 119.99940 * 143.36854 * 7 5 4 10 10 C 1.46505 * 119.99991 * 184.97659 * 9 7 5 11 11 H 1.09001 * 112.90539 * 27.05538 * 10 9 7 12 12 C 1.53775 * 113.61377 * 158.30232 * 10 9 7 13 13 C 1.53781 * 87.08089 * 89.11983 * 12 10 9 14 14 H 1.09004 * 113.61575 * 140.06783 * 13 12 10 15 15 N 1.46504 * 113.61196 * 270.88479 * 13 12 10 16 16 C 1.36943 * 119.99659 * 274.62383 * 15 13 12 17 17 H 1.08001 * 119.99937 * 0.02562 * 16 15 13 18 18 C 1.38815 * 119.99434 * 180.02562 * 16 15 13 19 19 N 1.31615 * 120.00463 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99554 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46753 * 89.99967 * 20 18 16 22 22 H 1.48500 * 109.47093 * 210.00095 * 20 18 16 23 23 H 1.48504 * 109.47204 * 330.00392 * 20 18 16 24 24 C 1.53778 * 87.08177 * 25.43175 * 13 12 10 25 25 C 1.50798 * 109.65962 * 47.31712 * 5 4 3 26 26 C 1.38612 * 118.13559 * 164.30247 * 25 5 4 27 27 C 1.38058 * 120.48907 * 179.72926 * 26 25 5 28 28 C 1.38302 * 119.89028 * 359.96404 * 27 26 25 29 29 C 1.37804 * 119.95501 * 0.13596 * 28 27 26 30 30 C 1.38381 * 122.00716 * 344.25415 * 25 5 4 31 31 H 1.09001 * 109.46901 * 182.77106 * 1 2 3 32 32 H 1.09000 * 109.47229 * 302.76560 * 1 2 3 33 33 H 1.08995 * 109.47685 * 62.76585 * 1 2 3 34 34 H 1.08995 * 109.60151 * 47.60404 * 3 2 1 35 35 H 1.08998 * 109.60307 * 168.10107 * 3 2 1 36 36 H 1.09005 * 109.76369 * 172.18233 * 4 3 2 37 37 H 1.09001 * 109.77374 * 51.39897 * 4 3 2 38 38 H 0.96998 * 119.99972 * 4.97754 * 9 7 5 39 39 H 1.08999 * 113.61928 * 334.56817 * 12 10 9 40 40 H 1.09007 * 113.61670 * 203.66372 * 12 10 9 41 41 H 0.96991 * 119.99795 * 94.62681 * 15 13 12 42 42 H 0.96994 * 119.99906 * 180.02562 * 19 18 16 43 43 H 1.09001 * 113.61461 * 89.11263 * 24 13 12 44 44 H 1.08998 * 113.61731 * 219.93729 * 24 13 12 45 45 H 1.07995 * 119.75733 * 359.71493 * 26 25 5 46 46 H 1.08003 * 120.05305 * 179.97438 * 27 26 25 47 47 H 1.08001 * 120.02677 * 180.12073 * 28 27 26 48 48 H 1.08002 * 119.79942 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9937 1.3671 0.0000 4 6 1.7537 1.9849 -1.3831 5 6 2.6484 1.2546 -2.3873 6 1 3.6849 1.5554 -2.2345 7 6 2.2242 1.6109 -3.7888 8 8 1.0492 1.7671 -4.0455 9 7 3.1506 1.7560 -4.7569 10 6 2.7505 2.2084 -6.0917 11 1 1.8492 2.8212 -6.0795 12 6 3.9022 2.8226 -6.9048 13 6 4.1947 1.4020 -7.4157 14 1 4.4607 1.3640 -8.4721 15 7 5.1254 0.6533 -6.5674 16 6 6.4762 0.7929 -6.7438 17 1 6.8554 1.4551 -7.5081 18 6 7.3580 0.0831 -5.9404 19 7 6.8959 -0.7243 -5.0094 20 14 9.2006 0.2729 -6.1815 21 1 9.7005 1.3788 -5.3257 22 1 9.8820 -0.9916 -5.8046 23 1 9.4842 0.5825 -7.6060 24 6 2.7161 1.0828 -7.1389 25 6 2.5235 -0.2350 -2.1886 26 6 2.9850 -1.0696 -3.1945 27 6 2.8997 -2.4410 -3.0609 28 6 2.3508 -2.9892 -1.9159 29 6 1.8880 -2.1659 -0.9125 30 6 1.9685 -0.7781 -1.0432 31 1 -0.3633 -1.0265 0.0497 32 1 -0.3634 0.5562 0.8641 33 1 -0.3634 0.4702 -0.9137 34 1 1.4784 1.9566 0.7583 35 1 3.0628 1.3485 0.2117 36 1 2.0101 3.0442 -1.3632 37 1 0.7077 1.8633 -1.6648 38 1 4.0822 1.5610 -4.5699 39 1 4.6993 3.2376 -6.2881 40 1 3.5693 3.5073 -7.6850 41 1 4.7848 0.0588 -5.8808 42 1 7.5121 -1.2200 -4.4478 43 1 2.0588 1.2918 -7.9830 44 1 2.5555 0.0926 -6.7125 45 1 3.4142 -0.6439 -4.0894 46 1 3.2611 -3.0848 -3.8493 47 1 2.2848 -4.0618 -1.8083 48 1 1.4595 -2.5966 -0.0196 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022224921.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:26:46 Heat of formation + Delta-G solvation = 16.925212 kcal Electronic energy + Delta-G solvation = -29452.593329 eV Core-core repulsion = 25700.474152 eV Total energy + Delta-G solvation = -3752.119177 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.13121 -40.84256 -39.29234 -37.91624 -35.46771 -35.01813 -33.89286 -31.76795 -31.34978 -30.85821 -28.40959 -26.74351 -26.27763 -25.66296 -24.44444 -23.99858 -23.07875 -21.57067 -20.50292 -20.10794 -19.22715 -18.47796 -17.84625 -17.23094 -16.93023 -16.74722 -16.58237 -16.13337 -15.66142 -15.57628 -15.34408 -15.11811 -15.02459 -14.88944 -14.68280 -14.17735 -13.87811 -13.44436 -13.36774 -13.34004 -13.12127 -13.09320 -12.98143 -12.81422 -12.77166 -12.55624 -12.32035 -12.15353 -11.94154 -11.89222 -11.71863 -11.66298 -11.11632 -11.01558 -10.82163 -10.28964 -10.00048 -9.68759 -8.98562 -8.89501 -7.91789 -5.20917 0.34112 0.43604 1.48994 1.50258 1.51184 1.57649 2.16654 2.56788 2.72298 2.91403 3.39795 3.50287 3.60318 3.66408 3.75262 3.83107 3.90716 3.96285 4.12734 4.17928 4.21814 4.25795 4.35255 4.39577 4.46160 4.50747 4.59321 4.60308 4.70529 4.78451 4.81361 4.86207 4.87795 4.94073 4.99441 5.03916 5.08037 5.17565 5.21298 5.36010 5.37183 5.47941 5.54423 5.65140 5.69798 5.81752 6.02115 6.29435 6.37776 6.52161 7.15044 7.36424 8.08674 8.33822 9.29424 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.011892 B = 0.004353 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.977135 B = 6430.302583 C = 7540.431188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.502 5.502 3 C 0.058 3.942 4 C -0.136 4.136 5 C -0.063 4.063 6 H 0.099 0.901 7 C 0.528 3.472 8 O -0.576 6.576 9 N -0.700 5.700 10 C 0.124 3.876 11 H 0.094 0.906 12 C -0.159 4.159 13 C 0.145 3.855 14 H 0.055 0.945 15 N -0.719 5.719 16 C -0.242 4.242 17 H 0.075 0.925 18 C -0.061 4.061 19 N -0.955 5.955 20 Si 0.964 3.036 21 H -0.289 1.289 22 H -0.300 1.300 23 H -0.274 1.274 24 C -0.152 4.152 25 C -0.123 4.123 26 C -0.109 4.109 27 C -0.142 4.142 28 C -0.101 4.101 29 C -0.126 4.126 30 C 0.109 3.891 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.022 0.978 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.408 0.592 39 H 0.058 0.942 40 H 0.115 0.885 41 H 0.374 0.626 42 H 0.250 0.750 43 H 0.118 0.882 44 H 0.046 0.954 45 H 0.101 0.899 46 H 0.121 0.879 47 H 0.152 0.848 48 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.569 2.926 9.026 15.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.218 5.218 3 C -0.069 4.069 4 C -0.175 4.175 5 C -0.084 4.084 6 H 0.117 0.883 7 C 0.315 3.685 8 O -0.456 6.456 9 N -0.351 5.351 10 C 0.019 3.981 11 H 0.112 0.888 12 C -0.200 4.200 13 C 0.036 3.964 14 H 0.073 0.927 15 N -0.360 5.360 16 C -0.374 4.374 17 H 0.093 0.907 18 C -0.255 4.255 19 N -0.605 5.605 20 Si 0.794 3.206 21 H -0.216 1.216 22 H -0.227 1.227 23 H -0.199 1.199 24 C -0.191 4.191 25 C -0.126 4.126 26 C -0.128 4.128 27 C -0.161 4.161 28 C -0.120 4.120 29 C -0.146 4.146 30 C 0.013 3.987 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.041 0.959 34 H 0.135 0.865 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.246 0.754 39 H 0.077 0.923 40 H 0.133 0.867 41 H 0.208 0.792 42 H 0.059 0.941 43 H 0.136 0.864 44 H 0.065 0.935 45 H 0.119 0.881 46 H 0.139 0.861 47 H 0.170 0.830 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.095 2.922 9.224 16.282 hybrid contribution 1.639 -0.093 -0.920 1.882 sum -11.456 2.830 8.304 14.430 Atomic orbital electron populations 1.22567 0.84025 1.03556 1.01639 1.58875 1.09253 1.13388 1.40272 1.22348 1.01952 0.86918 0.95676 1.22105 0.99518 1.00598 0.95263 1.20248 1.02315 0.93382 0.92468 0.88340 1.20627 0.85435 0.75275 0.87143 1.90602 1.18559 1.52732 1.83679 1.46119 1.11575 1.66643 1.10731 1.21809 0.98469 0.96479 0.81391 0.88821 1.23934 0.97013 0.99194 0.99863 1.21458 0.89022 0.91764 0.94157 0.92714 1.42342 1.01911 1.51394 1.40318 1.19504 0.83514 1.20467 1.13896 0.90730 1.25375 1.01361 0.99814 0.98928 1.69772 1.34288 1.32312 1.24129 0.85290 0.81419 0.76215 0.77653 1.21620 1.22711 1.19927 1.23698 0.97320 0.98259 0.99818 1.19534 1.04813 0.93555 0.94704 1.21132 0.98526 0.94859 0.98305 1.21211 1.00859 0.94551 0.99453 1.21292 0.96974 1.01115 0.92597 1.21249 1.02108 0.91122 1.00082 1.18605 0.98106 0.93497 0.88537 0.90341 0.88255 0.95931 0.86530 0.90055 0.88944 0.91075 0.75423 0.92329 0.86705 0.79207 0.94123 0.86416 0.93506 0.88100 0.86091 0.83025 0.83263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.22 127.69 1.18 1.69 16 2 N -0.50 -11.58 4.75 -720.65 -3.42 -15.00 16 3 C 0.06 1.20 5.82 86.52 0.50 1.70 16 4 C -0.14 -3.37 5.21 30.73 0.16 -3.21 16 5 C -0.06 -1.96 2.66 -12.24 -0.03 -2.00 16 6 H 0.10 3.06 8.12 -2.39 -0.02 3.04 16 7 C 0.53 18.86 5.80 87.66 0.51 19.37 16 8 O -0.58 -23.14 15.76 -3.05 -0.05 -23.18 16 9 N -0.70 -25.00 4.27 -440.04 -1.88 -26.88 16 10 C 0.12 4.08 4.24 45.51 0.19 4.28 16 11 H 0.09 3.00 7.61 -2.39 -0.02 2.98 16 12 C -0.16 -5.07 7.61 31.12 0.24 -4.83 16 13 C 0.15 5.43 4.53 45.52 0.21 5.64 16 14 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 15 N -0.72 -33.63 4.39 -320.43 -1.41 -35.03 16 16 C -0.24 -12.59 9.99 84.03 0.84 -11.75 16 17 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 18 C -0.06 -3.31 5.50 84.86 0.47 -2.84 16 19 N -0.96 -54.56 13.06 21.65 0.28 -54.28 16 20 Si 0.96 44.38 29.55 68.60 2.03 46.41 16 21 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 22 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 24 C -0.15 -5.01 7.57 31.12 0.24 -4.77 16 25 C -0.12 -4.08 5.40 -19.71 -0.11 -4.19 16 26 C -0.11 -4.05 9.07 22.32 0.20 -3.85 16 27 C -0.14 -4.72 10.05 22.24 0.22 -4.49 16 28 C -0.10 -2.71 10.03 22.18 0.22 -2.49 16 29 C -0.13 -3.25 9.29 22.50 0.21 -3.04 16 30 C 0.11 3.12 5.12 38.31 0.20 3.31 16 31 H 0.08 1.36 7.70 -2.39 -0.02 1.34 16 32 H 0.10 1.34 8.05 -2.39 -0.02 1.32 16 33 H 0.02 0.50 6.60 -2.39 -0.02 0.49 16 34 H 0.12 1.69 7.98 -2.39 -0.02 1.67 16 35 H 0.08 1.73 8.11 -2.39 -0.02 1.71 16 36 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.07 1.99 5.78 -2.39 -0.01 1.97 16 38 H 0.41 16.06 7.12 -92.71 -0.66 15.40 16 39 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.11 2.89 8.14 -2.38 -0.02 2.87 16 41 H 0.37 18.80 6.87 -92.71 -0.64 18.16 16 42 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 43 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 44 H 0.05 1.75 8.13 -2.39 -0.02 1.73 16 45 H 0.10 4.23 6.65 -2.91 -0.02 4.21 16 46 H 0.12 3.94 8.06 -2.91 -0.02 3.91 16 47 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 48 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -64.38 379.98 0.68 -63.70 By element: Atomic # 1 Polarization: 56.06 SS G_CDS: -0.32 Total: 55.75 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 5.44 Total: -11.47 kcal Atomic # 7 Polarization: -124.77 SS G_CDS: -6.42 Total: -131.19 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.05 Total: -23.18 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -64.38 0.68 -63.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022224921.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.625 kcal (2) G-P(sol) polarization free energy of solvation -64.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds