Wall clock time and date at job start Sat Apr 11 2020 02:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47892 * 111.00032 * 2 1 4 4 C 1.54586 * 102.64542 * 94.51536 * 3 2 1 5 5 C 1.51627 * 102.84367 * 25.62808 * 4 3 2 6 6 C 1.38083 * 131.37734 * 163.77819 * 5 4 3 7 7 C 1.38003 * 120.27977 * 180.14703 * 6 5 4 8 8 C 1.39617 * 119.74234 * 0.48346 * 7 6 5 9 9 C 1.47861 * 120.02514 * 179.61562 * 8 7 6 10 10 O 1.21554 * 119.99322 * 179.72686 * 9 8 7 11 11 N 1.34771 * 120.00031 * 359.72629 * 9 8 7 12 12 C 1.46501 * 119.99519 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.47101 * 174.11616 * 12 11 9 14 14 H 1.09006 * 109.86832 * 56.83833 * 13 12 11 15 15 C 1.54323 * 109.88490 * 177.85267 * 13 12 11 16 16 C 1.55160 * 102.94060 * 141.60827 * 15 13 12 17 17 C 1.54910 * 101.58156 * 324.50472 * 16 15 13 18 18 N 1.47023 * 109.88204 * 295.66760 * 13 12 11 19 19 C 1.36940 * 125.64902 * 61.61642 * 18 13 12 20 20 H 1.07997 * 120.00039 * 324.06554 * 19 18 13 21 21 C 1.38809 * 119.99833 * 144.06712 * 19 18 13 22 22 N 1.31615 * 120.00216 * 162.22345 * 21 19 18 23 23 Si 1.86803 * 119.99856 * 342.22573 * 21 19 18 24 24 H 1.48495 * 109.47215 * 94.11081 * 23 21 19 25 25 H 1.48501 * 109.46936 * 214.10910 * 23 21 19 26 26 H 1.48495 * 109.47097 * 334.10847 * 23 21 19 27 27 C 1.39265 * 119.94432 * 359.34365 * 8 7 6 28 28 C 1.39087 * 107.90750 * 343.92624 * 5 4 3 29 29 H 1.08990 * 109.47407 * 300.02157 * 1 2 3 30 30 H 1.09000 * 109.46871 * 60.01930 * 1 2 3 31 31 H 1.08998 * 109.47244 * 180.02562 * 1 2 3 32 32 H 1.09006 * 110.77954 * 212.80265 * 3 2 1 33 33 H 1.09004 * 110.78025 * 336.03710 * 3 2 1 34 34 H 1.08998 * 110.74009 * 143.96896 * 4 3 2 35 35 H 1.09005 * 110.73673 * 267.10935 * 4 3 2 36 36 H 1.07997 * 119.86275 * 0.39205 * 6 5 4 37 37 H 1.08005 * 120.13257 * 180.23533 * 7 6 5 38 38 H 0.96999 * 120.00585 * 0.27883 * 11 9 8 39 39 H 1.09002 * 109.47165 * 294.11469 * 12 11 9 40 40 H 1.08992 * 109.47441 * 54.11748 * 12 11 9 41 41 H 1.08997 * 110.72357 * 259.97309 * 15 13 12 42 42 H 1.09003 * 110.71741 * 23.24892 * 15 13 12 43 43 H 1.09008 * 111.00033 * 82.57540 * 16 15 13 44 44 H 1.08999 * 111.00406 * 206.42435 * 16 15 13 45 45 H 1.08999 * 110.36825 * 155.84644 * 17 16 15 46 46 H 1.09000 * 110.36448 * 278.05737 * 17 16 15 47 47 H 0.97000 * 120.00338 * 179.97438 * 22 21 19 48 48 H 1.08001 * 119.96409 * 180.34230 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3807 0.0000 4 6 2.2311 1.6541 1.5037 5 6 2.4322 0.2628 2.0721 6 6 2.9610 -0.1645 3.2739 7 6 3.0388 -1.5123 3.5599 8 6 2.5895 -2.4460 2.6242 9 6 2.6778 -3.8919 2.9206 10 8 2.2818 -4.7042 2.1076 11 7 3.1972 -4.3091 4.0921 12 6 3.2851 -5.7418 4.3855 13 6 4.0391 -5.9477 5.7008 14 1 3.5430 -5.3997 6.5020 15 6 4.0905 -7.4508 6.0467 16 6 5.5150 -7.6230 6.6371 17 6 6.3316 -6.6288 5.7742 18 7 5.4273 -5.4846 5.5592 19 6 5.8159 -4.2027 5.2742 20 1 5.2267 -3.5967 4.6020 21 6 6.9671 -3.6824 5.8493 22 7 7.5360 -2.6141 5.3324 23 14 7.7089 -4.4985 7.3571 24 1 8.7583 -5.4600 6.9336 25 1 8.3114 -3.4629 8.2344 26 1 6.6467 -5.2212 8.1017 27 6 2.0529 -2.0142 1.4138 28 6 1.9711 -0.6536 1.1329 29 1 -0.3634 0.5141 0.8897 30 1 -0.3633 0.5135 -0.8902 31 1 -0.3633 -1.0276 0.0005 32 1 2.9373 1.4347 -0.5521 33 1 1.2681 2.0755 -0.4139 34 1 3.1221 2.2641 1.6520 35 1 1.3586 2.1332 1.9480 36 1 3.3116 0.5592 3.9948 37 1 3.4494 -1.8438 4.5023 38 1 3.5094 -3.6608 4.7426 39 1 2.2811 -6.1569 4.4734 40 1 3.8174 -6.2458 3.5789 41 1 3.3326 -7.7020 6.7886 42 1 3.9692 -8.0573 5.1491 43 1 5.5389 -7.3384 7.6891 44 1 5.8733 -8.6435 6.5018 45 1 7.2268 -6.3097 6.3080 46 1 6.6012 -7.0856 4.8220 47 1 8.3403 -2.2502 5.7345 48 1 1.7001 -2.7360 0.6920 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028294801.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:25:30 Heat of formation + Delta-G solvation = 40.018088 kcal Electronic energy + Delta-G solvation = -28456.468005 eV Core-core repulsion = 24705.350210 eV Total energy + Delta-G solvation = -3751.117795 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.82031 -39.30572 -37.91748 -36.34049 -34.05789 -32.69268 -32.38552 -30.18731 -30.00638 -29.66272 -28.66122 -25.97126 -25.16914 -24.09971 -22.85151 -22.07596 -21.00417 -20.83901 -19.83630 -19.36740 -17.71695 -16.59880 -16.28748 -16.14963 -15.75796 -15.64892 -15.12852 -14.81387 -14.46618 -14.29189 -13.95098 -13.59973 -13.56423 -13.28356 -13.11224 -13.04571 -12.59984 -12.53433 -12.40394 -12.24978 -12.00914 -11.96430 -11.63706 -11.36313 -11.30057 -11.25526 -10.95574 -10.89085 -10.72534 -10.49573 -10.21370 -9.88292 -9.59595 -9.48945 -9.42534 -8.73786 -8.62861 -8.35645 -7.92889 -6.88293 -6.06105 -3.51233 1.02579 1.47927 3.15345 3.27400 3.40982 3.45934 3.46781 3.82259 4.09865 4.45396 4.46533 4.67102 4.81904 4.88822 4.98462 5.10746 5.11232 5.21109 5.25848 5.31252 5.38902 5.41901 5.42727 5.47029 5.51175 5.59491 5.65692 5.77104 5.81698 5.85669 5.93143 6.04631 6.08392 6.10514 6.24838 6.29893 6.35720 6.38979 6.50977 6.52331 6.56643 6.65183 6.82609 6.83325 6.84360 7.04372 7.22695 7.82447 8.10711 8.25396 8.71133 8.76303 9.58133 10.17558 11.07755 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.016299 B = 0.003378 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.529264 B = 8286.690908 C = 9662.270737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.495 5.495 3 C 0.049 3.951 4 C -0.111 4.111 5 C -0.120 4.120 6 C -0.093 4.093 7 C -0.082 4.082 8 C -0.112 4.112 9 C 0.555 3.445 10 O -0.556 6.556 11 N -0.701 5.701 12 C 0.116 3.884 13 C 0.142 3.858 14 H 0.048 0.952 15 C -0.121 4.121 16 C -0.136 4.136 17 C 0.117 3.883 18 N -0.601 5.601 19 C -0.259 4.259 20 H 0.091 0.909 21 C 0.037 3.963 22 N -0.899 5.899 23 Si 0.889 3.111 24 H -0.288 1.288 25 H -0.304 1.304 26 H -0.268 1.268 27 C -0.053 4.053 28 C 0.070 3.930 29 H 0.032 0.968 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.128 0.872 37 H 0.138 0.862 38 H 0.412 0.588 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.041 0.959 46 H 0.031 0.969 47 H 0.264 0.736 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.529 4.639 -3.531 13.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.212 5.212 3 C -0.078 4.078 4 C -0.149 4.149 5 C -0.123 4.123 6 C -0.112 4.112 7 C -0.101 4.101 8 C -0.115 4.115 9 C 0.342 3.658 10 O -0.436 6.436 11 N -0.353 5.353 12 C -0.010 4.010 13 C 0.035 3.965 14 H 0.066 0.934 15 C -0.159 4.159 16 C -0.174 4.174 17 C -0.007 4.007 18 N -0.327 5.327 19 C -0.387 4.387 20 H 0.108 0.892 21 C -0.165 4.165 22 N -0.540 5.540 23 Si 0.720 3.280 24 H -0.216 1.216 25 H -0.232 1.232 26 H -0.193 1.193 27 C -0.073 4.073 28 C -0.026 4.026 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.146 0.854 37 H 0.155 0.845 38 H 0.252 0.748 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.059 0.941 46 H 0.049 0.951 47 H 0.074 0.926 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.519 4.030 -4.597 13.932 hybrid contribution 0.741 0.365 1.786 1.968 sum -11.778 4.395 -2.811 12.882 Atomic orbital electron populations 1.22487 0.85693 1.02928 1.00864 1.60188 1.08396 1.14667 1.37983 1.23174 1.01389 0.87805 0.95383 1.21703 1.02955 0.94322 0.95963 1.21136 1.01251 0.95431 0.94489 1.20337 0.99305 0.95690 0.95824 1.21396 0.96861 0.92481 0.99352 1.19743 1.02877 0.93406 0.95497 1.18153 0.77870 0.87708 0.82072 1.90705 1.50000 1.55394 1.47548 1.46111 1.61206 1.09389 1.18633 1.21956 0.98978 0.80793 0.99240 1.21290 0.87988 0.93506 0.93685 0.93416 1.22486 0.97154 0.95813 1.00479 1.22782 0.95829 0.99015 0.99817 1.21888 0.93790 0.88566 0.96448 1.44675 0.99173 1.05000 1.83862 1.18662 1.10374 0.87317 1.22310 0.89218 1.25426 0.97947 0.95546 0.97557 1.69813 1.20107 1.24126 1.39948 0.86718 0.78836 0.77704 0.84717 1.21559 1.23223 1.19349 1.20443 0.97872 0.93023 0.95985 1.19340 1.00330 0.93167 0.89747 0.94943 0.90840 0.90850 0.89162 0.89775 0.89289 0.90103 0.85428 0.84474 0.74837 0.92766 0.91524 0.91387 0.91212 0.91609 0.91535 0.94104 0.95081 0.92574 0.84753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.29 60.06 0.56 0.82 16 2 N -0.49 -6.11 5.33 -176.89 -0.94 -7.05 16 3 C 0.05 0.48 7.00 -2.44 -0.02 0.46 16 4 C -0.11 -1.12 6.97 -26.59 -0.19 -1.31 16 5 C -0.12 -1.64 6.23 -103.91 -0.65 -2.29 16 6 C -0.09 -1.34 10.01 -39.72 -0.40 -1.74 16 7 C -0.08 -1.33 9.55 -39.15 -0.37 -1.71 16 8 C -0.11 -1.96 5.86 -105.06 -0.62 -2.58 16 9 C 0.56 10.92 7.77 -12.32 -0.10 10.82 16 10 O -0.56 -12.24 16.32 5.32 0.09 -12.15 16 11 N -0.70 -13.30 4.30 -61.24 -0.26 -13.57 16 12 C 0.12 2.12 5.15 -4.04 -0.02 2.10 16 13 C 0.14 2.61 3.30 -66.95 -0.22 2.39 16 14 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 15 C -0.12 -1.82 6.48 -24.89 -0.16 -1.98 16 16 C -0.14 -2.23 7.09 -24.58 -0.17 -2.41 16 17 C 0.12 2.45 6.24 -2.53 -0.02 2.43 16 18 N -0.60 -13.48 2.67 -162.57 -0.43 -13.91 16 19 C -0.26 -6.70 9.50 -15.06 -0.14 -6.84 16 20 H 0.09 2.38 5.53 -52.49 -0.29 2.09 16 21 C 0.04 1.00 5.45 -17.43 -0.10 0.90 16 22 N -0.90 -26.10 13.97 55.49 0.78 -25.33 16 23 Si 0.89 21.65 24.83 -169.99 -4.22 17.43 16 24 H -0.29 -6.99 6.81 56.52 0.39 -6.61 16 25 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 26 H -0.27 -6.32 7.06 56.52 0.40 -5.92 16 27 C -0.05 -0.87 9.62 -38.85 -0.37 -1.24 16 28 C 0.07 1.02 5.58 -83.42 -0.47 0.55 16 29 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.60 7.76 -51.93 -0.40 0.20 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 37 H 0.14 2.24 6.40 -52.48 -0.34 1.91 16 38 H 0.41 7.81 4.35 -40.82 -0.18 7.63 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.34 8.12 -51.93 -0.42 0.92 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.98 7.85 -51.93 -0.41 0.57 16 43 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.04 0.93 3.22 -51.93 -0.17 0.76 16 46 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 48 H 0.13 2.25 7.63 -52.49 -0.40 1.85 16 LS Contribution 374.39 15.07 5.64 5.64 Total: -1.00 -31.85 374.39 -10.06 -41.90 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -7.25 Total: 8.66 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -3.45 Total: -1.62 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -0.87 Total: -59.86 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.09 Total: -12.15 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.22 Total: 17.43 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.85 -10.06 -41.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028294801.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.921 kcal (2) G-P(sol) polarization free energy of solvation -31.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds