Wall clock time and date at job start Sat Apr 11 2020 02:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46424 * 111.00272 * 2 1 4 4 C 1.53351 * 108.63154 * 287.86829 * 3 2 1 5 5 C 1.53049 * 107.94813 * 291.73293 * 4 3 2 6 6 H 1.08997 * 109.43646 * 287.32756 * 5 4 3 7 7 C 1.50701 * 109.44059 * 167.40747 * 5 4 3 8 8 O 1.21288 * 119.99434 * 324.18508 * 7 5 4 9 9 N 1.34776 * 120.00063 * 144.18473 * 7 5 4 10 10 C 1.46498 * 119.99910 * 174.91663 * 9 7 5 11 11 C 1.52992 * 109.47089 * 179.97438 * 10 9 7 12 12 H 1.09002 * 112.77985 * 56.27681 * 11 10 9 13 13 C 1.53761 * 113.55402 * 187.13165 * 11 10 9 14 14 C 1.53495 * 83.25768 * 140.98655 * 13 11 10 15 15 N 1.47063 * 87.98838 * 333.76770 * 14 13 11 16 16 C 1.36940 * 136.06075 * 207.08956 * 15 14 13 17 17 H 1.07996 * 120.00576 * 180.26858 * 16 15 14 18 18 C 1.38814 * 119.99363 * 359.97438 * 16 15 14 19 19 N 1.31615 * 120.00485 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99620 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47007 * 60.00169 * 20 18 16 22 22 H 1.48500 * 109.47232 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47118 * 300.00407 * 20 18 16 24 24 C 1.50802 * 109.62587 * 47.36741 * 5 4 3 25 25 C 1.38611 * 118.12810 * 164.28716 * 24 5 4 26 26 C 1.38053 * 120.48464 * 179.73486 * 25 24 5 27 27 C 1.38312 * 119.89446 * 359.95859 * 26 25 24 28 28 C 1.37809 * 119.94782 * 0.13733 * 27 26 25 29 29 C 1.38367 * 122.01227 * 344.23664 * 24 5 4 30 30 H 1.08997 * 109.46940 * 190.67817 * 1 2 3 31 31 H 1.09001 * 109.46819 * 310.67672 * 1 2 3 32 32 H 1.08997 * 109.47166 * 70.66934 * 1 2 3 33 33 H 1.09008 * 109.59997 * 47.60778 * 3 2 1 34 34 H 1.08991 * 109.60781 * 167.93508 * 3 2 1 35 35 H 1.09005 * 109.73390 * 172.14352 * 4 3 2 36 36 H 1.08996 * 109.80055 * 51.36547 * 4 3 2 37 37 H 0.96997 * 119.99593 * 354.91443 * 9 7 5 38 38 H 1.08998 * 109.47216 * 59.99532 * 10 9 7 39 39 H 1.09002 * 109.47383 * 299.99988 * 10 9 7 40 40 H 1.08999 * 114.39155 * 27.42907 * 13 11 10 41 41 H 1.08999 * 114.26610 * 254.54304 * 13 11 10 42 42 H 1.08998 * 113.47256 * 218.98412 * 14 13 11 43 43 H 1.08999 * 113.46602 * 88.54432 * 14 13 11 44 44 H 0.97001 * 120.00400 * 179.97438 * 19 18 16 45 45 H 1.07999 * 119.76220 * 359.75038 * 25 24 5 46 46 H 1.08004 * 120.05402 * 179.97438 * 26 25 24 47 47 H 1.08000 * 120.02478 * 180.17107 * 27 26 25 48 48 H 1.08001 * 119.78953 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9938 1.3670 0.0000 4 6 1.7532 1.9841 -1.3830 5 6 2.6485 1.2546 -2.3873 6 1 3.6850 1.5553 -2.2345 7 6 2.2243 1.6110 -3.7888 8 8 1.0505 1.7811 -4.0422 9 7 3.1493 1.7407 -4.7604 10 6 2.7300 1.9770 -6.1441 11 6 3.9655 2.0859 -7.0398 12 1 4.6109 1.2097 -6.9770 13 6 3.6428 2.5063 -8.4832 14 6 4.9300 3.3300 -8.3391 15 7 4.6883 3.3577 -6.8887 16 6 5.0028 4.1959 -5.8525 17 1 4.6861 3.9557 -4.8483 18 6 5.7340 5.3513 -6.0919 19 7 6.1245 5.6415 -7.3149 20 14 6.1636 6.4944 -4.6783 21 1 6.9743 5.7582 -3.6753 22 1 6.9426 7.6486 -5.1943 23 1 4.9150 6.9853 -4.0416 24 6 2.5234 -0.2350 -2.1886 25 6 2.9849 -1.0695 -3.1945 26 6 2.8995 -2.4409 -3.0611 27 6 2.3506 -2.9893 -1.9161 28 6 1.8878 -2.1659 -0.9126 29 6 1.9685 -0.7782 -1.0433 30 1 -0.3633 -1.0098 0.1904 31 1 -0.3633 0.6698 0.7794 32 1 -0.3633 0.3402 -0.9697 33 1 1.4785 1.9565 0.7584 34 1 3.0623 1.3486 0.2146 35 1 2.0090 3.0435 -1.3629 36 1 0.7074 1.8621 -1.6649 37 1 4.0926 1.6777 -4.5434 38 1 2.1599 2.9044 -6.1977 39 1 2.1078 1.1481 -6.4818 40 1 2.7381 3.1054 -8.5860 41 1 3.7089 1.6974 -9.2108 42 1 4.8716 4.3123 -8.8077 43 1 5.8297 2.7818 -8.6187 44 1 6.6351 6.4491 -7.4822 45 1 3.4148 -0.6438 -4.0892 46 1 3.2609 -3.0847 -3.8494 47 1 2.2852 -4.0619 -1.8083 48 1 1.4601 -2.5968 -0.0194 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038357331.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:25:37 Heat of formation + Delta-G solvation = 56.295636 kcal Electronic energy + Delta-G solvation = -28781.176584 eV Core-core repulsion = 25030.764636 eV Total energy + Delta-G solvation = -3750.411947 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.09450 -39.16519 -38.06362 -37.11428 -34.10450 -33.89734 -32.24317 -30.53170 -30.03346 -28.41530 -27.94258 -26.94205 -24.62207 -23.50765 -23.32937 -22.59991 -21.69046 -20.37726 -19.56476 -19.18410 -17.53623 -16.89229 -16.46048 -16.30528 -15.90426 -15.62303 -15.24116 -14.74303 -14.52379 -14.31642 -14.09644 -13.95506 -13.77532 -13.32426 -13.24160 -13.11567 -12.82861 -12.57618 -12.29993 -12.11417 -12.03597 -11.89525 -11.56655 -11.48037 -11.14903 -11.01929 -11.01469 -10.80716 -10.75909 -10.62097 -10.06324 -9.88034 -9.79499 -9.44498 -9.23199 -8.85102 -8.78232 -8.59773 -8.06510 -6.94093 -5.80748 -3.13556 1.20244 1.28078 2.86290 3.34714 3.38751 3.40940 3.41959 3.53726 3.79661 4.39362 4.48264 4.58135 4.70059 4.83156 4.97414 5.04210 5.13340 5.14046 5.21300 5.26778 5.29124 5.36830 5.39503 5.45029 5.52737 5.56892 5.57639 5.63023 5.70577 5.81019 5.87962 5.91506 6.06369 6.07960 6.19205 6.29195 6.31249 6.37126 6.44961 6.56408 6.63616 6.68343 6.80773 6.85182 7.18503 7.21781 7.35443 7.53607 7.84374 7.93407 8.50422 8.98552 9.66179 10.58942 11.36341 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.014021 B = 0.003560 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.518368 B = 7863.778538 C = 8978.071017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.503 5.503 3 C 0.056 3.944 4 C -0.145 4.145 5 C -0.066 4.066 6 H 0.101 0.899 7 C 0.522 3.478 8 O -0.545 6.545 9 N -0.712 5.712 10 C 0.121 3.879 11 C 0.127 3.873 12 H 0.048 0.952 13 C -0.161 4.161 14 C 0.151 3.849 15 N -0.600 5.600 16 C -0.216 4.216 17 H 0.079 0.921 18 C -0.006 4.006 19 N -0.918 5.918 20 Si 0.908 3.092 21 H -0.285 1.285 22 H -0.289 1.289 23 H -0.284 1.284 24 C -0.102 4.102 25 C -0.100 4.100 26 C -0.131 4.131 27 C -0.108 4.108 28 C -0.122 4.122 29 C 0.117 3.883 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.403 0.597 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.025 0.975 44 H 0.254 0.746 45 H 0.124 0.876 46 H 0.123 0.877 47 H 0.123 0.877 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.929 -14.992 11.188 20.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.220 5.220 3 C -0.071 4.071 4 C -0.184 4.184 5 C -0.087 4.087 6 H 0.119 0.881 7 C 0.308 3.692 8 O -0.423 6.423 9 N -0.362 5.362 10 C -0.003 4.003 11 C 0.019 3.981 12 H 0.065 0.935 13 C -0.200 4.200 14 C 0.026 3.974 15 N -0.326 5.326 16 C -0.343 4.343 17 H 0.097 0.903 18 C -0.203 4.203 19 N -0.565 5.565 20 Si 0.738 3.262 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.211 1.211 24 C -0.105 4.105 25 C -0.118 4.118 26 C -0.150 4.150 27 C -0.127 4.127 28 C -0.142 4.142 29 C 0.021 3.979 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.238 0.762 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.042 0.958 44 H 0.064 0.936 45 H 0.142 0.858 46 H 0.141 0.859 47 H 0.141 0.859 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.494 -14.727 11.607 20.586 hybrid contribution 0.816 0.997 0.099 1.292 sum -7.678 -13.730 11.706 19.609 Atomic orbital electron populations 1.22482 0.85071 1.02843 1.01436 1.58770 1.08438 1.13276 1.41477 1.22269 1.01540 0.86982 0.96299 1.22129 1.01135 1.00396 0.94743 1.20232 1.02007 0.92716 0.93781 0.88093 1.20178 0.86112 0.76737 0.86221 1.90654 1.17942 1.50787 1.82918 1.46074 1.09791 1.71904 1.08413 1.21806 0.97914 1.00815 0.79798 1.22460 0.91432 0.91320 0.92846 0.93504 1.23703 1.01012 1.00044 0.95233 1.22023 0.91663 0.98271 0.85455 1.45680 1.63059 1.19168 1.04733 1.18784 1.28996 0.99588 0.86908 0.90331 1.24770 1.00462 0.98401 0.96640 1.69811 1.41838 1.26478 1.18326 0.86270 0.78103 0.80519 0.81300 1.21178 1.21505 1.21104 1.19488 1.03362 0.93683 0.93940 1.21133 0.98770 0.93694 0.98249 1.21044 1.00892 0.94792 0.98265 1.20989 0.98371 0.99577 0.93715 1.20977 1.02233 0.91529 0.99473 1.18422 0.98236 0.92598 0.88650 0.91036 0.90766 0.94135 0.89467 0.89833 0.89982 0.89669 0.76210 0.91046 0.92404 0.90222 0.92374 0.90987 0.95761 0.93595 0.85794 0.85925 0.85900 0.85714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.06 60.07 0.54 0.80 16 2 N -0.50 -5.54 4.75 -179.15 -0.85 -6.39 16 3 C 0.06 0.58 5.81 -3.90 -0.02 0.56 16 4 C -0.14 -1.81 5.20 -26.52 -0.14 -1.95 16 5 C -0.07 -0.90 2.68 -92.85 -0.25 -1.15 16 6 H 0.10 1.27 8.08 -51.93 -0.42 0.85 16 7 C 0.52 8.78 5.83 -10.99 -0.06 8.71 16 8 O -0.55 -10.98 16.06 5.55 0.09 -10.89 16 9 N -0.71 -11.86 4.58 -60.30 -0.28 -12.13 16 10 C 0.12 2.17 5.54 -4.05 -0.02 2.14 16 11 C 0.13 2.40 4.11 -72.26 -0.30 2.10 16 12 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 13 C -0.16 -2.89 8.04 -26.08 -0.21 -3.10 16 14 C 0.15 3.43 7.39 -8.51 -0.06 3.36 16 15 N -0.60 -14.39 3.65 -176.83 -0.65 -15.04 16 16 C -0.22 -5.69 10.55 -15.06 -0.16 -5.85 16 17 H 0.08 1.98 7.50 -52.49 -0.39 1.59 16 18 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 19 N -0.92 -26.70 11.51 55.49 0.64 -26.06 16 20 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 24 C -0.10 -1.35 5.40 -104.39 -0.56 -1.91 16 25 C -0.10 -1.28 9.07 -39.51 -0.36 -1.64 16 26 C -0.13 -1.45 10.05 -39.62 -0.40 -1.85 16 27 C -0.11 -1.09 10.04 -39.71 -0.40 -1.49 16 28 C -0.12 -1.33 9.41 -39.23 -0.37 -1.70 16 29 C 0.12 1.44 5.11 -83.85 -0.43 1.01 16 30 H 0.07 0.61 7.89 -51.93 -0.41 0.20 16 31 H 0.07 0.58 7.88 -51.93 -0.41 0.17 16 32 H 0.04 0.45 6.91 -51.93 -0.36 0.09 16 33 H 0.09 0.74 7.87 -51.92 -0.41 0.33 16 34 H 0.08 0.85 8.11 -51.93 -0.42 0.42 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.20 5.93 -51.93 -0.31 0.90 16 37 H 0.40 6.42 8.33 -40.82 -0.34 6.08 16 38 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.08 1.44 8.13 -51.93 -0.42 1.02 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.07 1.83 7.13 -51.93 -0.37 1.46 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.12 1.59 6.80 -52.49 -0.36 1.23 16 46 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 47 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 48 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 382.10 15.07 5.76 5.76 Total: -1.00 -32.05 382.10 -11.16 -43.21 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -7.56 Total: 7.05 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -3.29 Total: -2.20 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: -1.13 Total: -59.62 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.05 -11.16 -43.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038357331.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.504 kcal (2) G-P(sol) polarization free energy of solvation -32.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds