Wall clock time and date at job start Sat Apr 11 2020 02:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47000 * 2 1 4 4 C 1.53004 * 109.47235 * 119.99916 * 2 1 3 5 5 N 1.46499 * 109.47243 * 295.00068 * 4 2 1 6 6 C 1.36933 * 120.00145 * 180.02562 * 5 4 2 7 7 H 1.08003 * 119.99582 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00420 * 179.97438 * 6 5 4 9 9 N 1.31621 * 119.99652 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00335 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47070 * 89.99997 * 10 8 6 12 12 H 1.48498 * 109.47238 * 210.00113 * 10 8 6 13 13 H 1.48498 * 109.47281 * 330.00062 * 10 8 6 14 14 C 1.52997 * 109.47328 * 240.00290 * 2 1 3 15 15 N 1.46498 * 109.47251 * 64.99349 * 14 2 1 16 16 C 1.34777 * 120.00211 * 180.02562 * 15 14 2 17 17 O 1.21284 * 119.99681 * 0.02562 * 16 15 14 18 18 C 1.50701 * 120.00042 * 180.02562 * 16 15 14 19 19 C 1.50701 * 109.47014 * 180.02562 * 18 16 15 20 20 C 1.34244 * 126.50036 * 264.97497 * 19 18 16 21 21 N 1.36826 * 109.93190 * 180.02562 * 20 19 18 22 22 C 1.46494 * 125.06435 * 179.97438 * 21 20 19 23 23 C 1.37694 * 109.87278 * 0.02562 * 21 20 19 24 24 C 1.39119 * 133.50605 * 179.97438 * 23 21 20 25 25 C 1.37749 * 119.77803 * 180.02562 * 24 23 21 26 26 C 1.38834 * 120.66679 * 0.04358 * 25 24 23 27 27 C 1.36626 * 120.52624 * 0.02562 * 26 25 24 28 28 C 1.39624 * 119.76497 * 359.97438 * 27 26 25 29 29 H 1.09006 * 109.47284 * 299.99849 * 1 2 3 30 30 H 1.08993 * 109.47551 * 60.00125 * 1 2 3 31 31 H 1.09004 * 109.47000 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.46914 * 55.00328 * 4 2 1 33 33 H 1.09003 * 109.46940 * 174.99788 * 4 2 1 34 34 H 0.97002 * 119.99556 * 359.97438 * 5 4 2 35 35 H 0.97001 * 119.99901 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.46737 * 305.00074 * 14 2 1 37 37 H 1.09001 * 109.47306 * 184.99866 * 14 2 1 38 38 H 0.97000 * 119.99768 * 0.02562 * 15 14 2 39 39 H 1.09001 * 109.47016 * 60.00195 * 18 16 15 40 40 H 1.09001 * 109.47199 * 299.99882 * 18 16 15 41 41 H 1.08005 * 125.03154 * 359.75522 * 20 19 18 42 42 H 1.09009 * 109.47072 * 90.03089 * 22 21 20 43 43 H 1.08996 * 109.47341 * 210.02367 * 22 21 20 44 44 H 1.08990 * 109.47464 * 330.02870 * 22 21 20 45 45 H 1.08002 * 120.11411 * 0.06256 * 24 23 21 46 46 H 1.08006 * 119.66936 * 180.02562 * 25 24 23 47 47 H 1.08004 * 119.73784 * 179.97438 * 26 25 24 48 48 H 1.07999 * 120.11679 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6525 0.0353 2.4424 6 6 2.0020 -0.4202 3.6855 7 1 2.5638 -1.3371 3.7863 8 6 1.6353 0.2969 4.8161 9 7 0.9511 1.4145 4.6931 10 14 2.1115 -0.3250 6.5119 11 1 3.4343 0.2337 6.8905 12 1 1.0910 0.1049 7.5013 13 1 2.1878 -1.8079 6.4919 14 6 2.0400 -0.7212 -1.2492 15 7 1.6523 0.0354 -2.4424 16 6 1.9955 -0.4135 -3.6660 17 8 2.6248 -1.4441 -3.7793 18 6 1.5972 0.3651 -4.8933 19 6 2.0984 -0.3460 -6.1238 20 6 3.2455 -0.1003 -6.7765 21 7 3.3626 -0.9438 -7.8475 22 6 4.4871 -0.9608 -8.7863 23 6 2.2657 -1.7735 -7.9120 24 6 1.8849 -2.7920 -8.7799 25 6 0.6947 -3.4549 -8.5763 26 6 -0.1313 -3.1168 -7.5129 27 6 0.2225 -2.1189 -6.6493 28 6 1.4245 -1.4338 -6.8369 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -1.7197 1.2951 33 1 3.1263 -0.7995 1.2056 34 1 1.1489 0.8594 2.3517 35 1 0.6951 1.9159 5.4831 36 1 1.6054 -1.7197 -1.2952 37 1 3.1263 -0.7994 -1.2056 38 1 1.1487 0.8594 -2.3517 39 1 2.0325 1.3633 -4.8474 40 1 0.5109 0.4440 -4.9368 41 1 3.9667 0.6545 -6.4999 42 1 5.2504 -1.6509 -8.4265 43 1 4.1373 -1.2849 -9.7664 44 1 4.9104 0.0405 -8.8644 45 1 2.5205 -3.0623 -9.6101 46 1 0.4010 -4.2456 -9.2509 47 1 -1.0614 -3.6462 -7.3676 48 1 -0.4249 -1.8616 -5.8241 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753628403.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:27:20 Heat of formation + Delta-G solvation = 26.714934 kcal Electronic energy + Delta-G solvation = -26704.489538 eV Core-core repulsion = 22952.794875 eV Total energy + Delta-G solvation = -3751.694663 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.56392 -39.50256 -37.23881 -36.77353 -34.29836 -33.90377 -32.45028 -30.53387 -30.50262 -29.81837 -28.62788 -26.54792 -25.70268 -24.76369 -22.83267 -22.45318 -21.63196 -20.66234 -20.04142 -19.37924 -17.36115 -17.02002 -16.78889 -16.64576 -15.86119 -15.62932 -15.50493 -15.40245 -14.55617 -14.43536 -14.18008 -14.05118 -13.74441 -13.57901 -13.22790 -13.18440 -13.02272 -12.90816 -12.60581 -12.52041 -12.34369 -12.09563 -11.95487 -11.53124 -11.47368 -11.04075 -10.97402 -10.88606 -10.67202 -10.52700 -10.37955 -10.05573 -9.87937 -9.68997 -9.53495 -8.91709 -8.85892 -8.32407 -7.73982 -6.90458 -5.75650 -3.03780 0.97407 1.48422 2.39804 2.57774 2.76396 3.39300 3.44974 3.50318 3.51944 3.80120 4.36342 4.47928 4.56050 4.60945 4.71242 4.79841 4.89693 4.95175 5.02073 5.04965 5.08149 5.19308 5.27292 5.32013 5.37684 5.43355 5.54347 5.59533 5.62070 5.69826 5.86832 5.96391 6.01814 6.05515 6.15244 6.29377 6.31251 6.43251 6.47417 6.57010 6.58650 6.62219 6.68453 6.80605 6.90431 7.02978 7.09910 7.61466 7.72087 8.35625 8.43669 9.54850 10.12486 10.47421 11.47376 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.026120 B = 0.001816 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.712600 B =15416.120803 C =15790.667228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.070 0.930 8 C -0.016 4.016 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.128 3.872 15 N -0.729 5.729 16 C 0.508 3.492 17 O -0.532 6.532 18 C -0.065 4.065 19 C -0.150 4.150 20 C 0.063 3.937 21 N -0.488 5.488 22 C 0.080 3.920 23 C 0.097 3.903 24 C -0.131 4.131 25 C -0.102 4.102 26 C -0.149 4.149 27 C -0.066 4.066 28 C -0.089 4.089 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.022 0.978 33 H 0.020 0.980 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.399 0.601 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.166 0.834 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.116 0.884 46 H 0.122 0.878 47 H 0.121 0.879 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.142 -2.044 -32.080 32.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.088 0.912 8 C -0.211 4.211 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.004 3.996 15 N -0.382 5.382 16 C 0.294 3.706 17 O -0.408 6.408 18 C -0.105 4.105 19 C -0.158 4.158 20 C -0.062 4.062 21 N -0.171 5.171 22 C -0.061 4.061 23 C -0.009 4.009 24 C -0.152 4.152 25 C -0.121 4.121 26 C -0.168 4.168 27 C -0.085 4.085 28 C -0.094 4.094 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.038 0.962 34 H 0.218 0.782 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.234 0.766 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.184 0.816 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.134 0.866 46 H 0.140 0.860 47 H 0.139 0.861 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.969 -2.894 -32.237 32.426 hybrid contribution 0.008 0.369 1.067 1.129 sum 1.977 -2.525 -31.170 31.335 Atomic orbital electron populations 1.21785 0.94692 1.01904 1.01448 1.21543 0.96690 1.00436 0.94224 0.90598 1.20581 0.96578 0.94232 0.85436 1.42341 1.66916 1.27681 1.00595 1.19244 1.28521 1.05429 0.83689 0.91171 1.24737 1.01078 0.97459 0.97855 1.69658 1.43595 1.16640 1.28457 0.86173 0.77554 0.78021 0.84364 1.21765 1.21792 1.20764 1.21369 0.99941 0.95260 0.83049 1.46099 1.58151 1.27951 1.05955 1.20664 0.79628 0.85973 0.84357 1.90719 1.39324 1.24207 1.86591 1.19936 1.02779 0.98577 0.89231 1.19512 0.96646 1.00951 0.98652 1.21505 0.98442 0.96937 0.89327 1.43683 1.17747 1.30602 1.25100 1.21910 0.88002 1.03592 0.92623 1.18221 0.88526 0.95591 0.98544 1.19960 0.98426 0.96982 0.99833 1.20768 0.93810 0.99403 0.98118 1.20609 1.00575 0.99242 0.96383 1.20257 0.94723 0.94991 0.98483 1.18980 0.95661 0.98506 0.96223 0.91228 0.93852 0.92875 0.96016 0.96186 0.78211 0.93561 0.91552 0.91609 0.76644 0.88286 0.88261 0.81643 0.91326 0.90269 0.89935 0.86645 0.85969 0.86144 0.86335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.94 37.16 0.33 -1.75 16 2 C -0.11 -1.70 2.46 -90.62 -0.22 -1.92 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.16 3.22 5.65 -4.04 -0.02 3.20 16 5 N -0.73 -18.43 5.33 -59.91 -0.32 -18.75 16 6 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 7 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 8 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 9 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 10 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 C 0.13 1.80 5.06 -4.04 -0.02 1.78 16 15 N -0.73 -8.46 5.28 -60.29 -0.32 -8.78 16 16 C 0.51 6.48 7.82 -10.98 -0.09 6.40 16 17 O -0.53 -9.25 16.03 5.55 0.09 -9.16 16 18 C -0.06 -0.59 6.23 -29.03 -0.18 -0.77 16 19 C -0.15 -1.68 4.81 -102.71 -0.49 -2.18 16 20 C 0.06 0.61 11.20 -16.73 -0.19 0.43 16 21 N -0.49 -4.68 3.18 -121.81 -0.39 -5.07 16 22 C 0.08 0.44 11.03 59.84 0.66 1.10 16 23 C 0.10 1.10 6.81 -83.99 -0.57 0.53 16 24 C -0.13 -1.28 9.96 -39.43 -0.39 -1.67 16 25 C -0.10 -0.94 10.01 -39.54 -0.40 -1.33 16 26 C -0.15 -1.48 9.97 -39.94 -0.40 -1.88 16 27 C -0.07 -0.75 10.05 -39.65 -0.40 -1.15 16 28 C -0.09 -1.10 6.35 -105.14 -0.67 -1.77 16 29 H 0.07 1.21 7.18 -51.93 -0.37 0.83 16 30 H 0.04 0.51 7.18 -51.93 -0.37 0.14 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.38 10.03 6.85 -40.82 -0.28 9.75 16 35 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.40 3.60 7.66 -40.82 -0.31 3.29 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.17 1.12 8.06 -52.48 -0.42 0.70 16 42 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 43 H 0.08 0.33 8.10 -51.93 -0.42 -0.09 16 44 H 0.08 0.28 8.13 -51.93 -0.42 -0.14 16 45 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 46 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 47 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 48 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 400.43 15.07 6.03 6.03 Total: -1.00 -36.07 400.43 -10.14 -46.21 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -7.65 Total: 7.86 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -3.29 Total: -8.41 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: -0.30 Total: -60.09 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.07 -10.14 -46.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753628403.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.925 kcal (2) G-P(sol) polarization free energy of solvation -36.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds