Wall clock time and date at job start Sat Apr 11 2020 02:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47000 * 2 1 4 4 C 1.53004 * 109.47235 * 119.99916 * 2 1 3 5 5 N 1.46499 * 109.47243 * 295.00068 * 4 2 1 6 6 C 1.36933 * 120.00145 * 180.02562 * 5 4 2 7 7 H 1.08003 * 119.99582 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00420 * 179.97438 * 6 5 4 9 9 N 1.31621 * 119.99652 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00335 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47070 * 89.99997 * 10 8 6 12 12 H 1.48498 * 109.47238 * 210.00113 * 10 8 6 13 13 H 1.48498 * 109.47281 * 330.00062 * 10 8 6 14 14 C 1.52997 * 109.47328 * 240.00290 * 2 1 3 15 15 N 1.46498 * 109.47251 * 64.99349 * 14 2 1 16 16 C 1.34777 * 120.00211 * 180.02562 * 15 14 2 17 17 O 1.21284 * 119.99681 * 0.02562 * 16 15 14 18 18 C 1.50701 * 120.00042 * 180.02562 * 16 15 14 19 19 C 1.50701 * 109.47014 * 180.02562 * 18 16 15 20 20 C 1.34244 * 126.50036 * 264.97497 * 19 18 16 21 21 N 1.36826 * 109.93190 * 180.02562 * 20 19 18 22 22 C 1.46494 * 125.06435 * 179.97438 * 21 20 19 23 23 C 1.37694 * 109.87278 * 0.02562 * 21 20 19 24 24 C 1.39119 * 133.50605 * 179.97438 * 23 21 20 25 25 C 1.37749 * 119.77803 * 180.02562 * 24 23 21 26 26 C 1.38834 * 120.66679 * 0.04358 * 25 24 23 27 27 C 1.36626 * 120.52624 * 0.02562 * 26 25 24 28 28 C 1.39624 * 119.76497 * 359.97438 * 27 26 25 29 29 H 1.09006 * 109.47284 * 299.99849 * 1 2 3 30 30 H 1.08993 * 109.47551 * 60.00125 * 1 2 3 31 31 H 1.09004 * 109.47000 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.46914 * 55.00328 * 4 2 1 33 33 H 1.09003 * 109.46940 * 174.99788 * 4 2 1 34 34 H 0.97002 * 119.99556 * 359.97438 * 5 4 2 35 35 H 0.97001 * 119.99901 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.46737 * 305.00074 * 14 2 1 37 37 H 1.09001 * 109.47306 * 184.99866 * 14 2 1 38 38 H 0.97000 * 119.99768 * 0.02562 * 15 14 2 39 39 H 1.09001 * 109.47016 * 60.00195 * 18 16 15 40 40 H 1.09001 * 109.47199 * 299.99882 * 18 16 15 41 41 H 1.08005 * 125.03154 * 359.75522 * 20 19 18 42 42 H 1.09009 * 109.47072 * 90.03089 * 22 21 20 43 43 H 1.08996 * 109.47341 * 210.02367 * 22 21 20 44 44 H 1.08990 * 109.47464 * 330.02870 * 22 21 20 45 45 H 1.08002 * 120.11411 * 0.06256 * 24 23 21 46 46 H 1.08006 * 119.66936 * 180.02562 * 25 24 23 47 47 H 1.08004 * 119.73784 * 179.97438 * 26 25 24 48 48 H 1.07999 * 120.11679 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6525 0.0353 2.4424 6 6 2.0020 -0.4202 3.6855 7 1 2.5638 -1.3371 3.7863 8 6 1.6353 0.2969 4.8161 9 7 0.9511 1.4145 4.6931 10 14 2.1115 -0.3250 6.5119 11 1 3.4343 0.2337 6.8905 12 1 1.0910 0.1049 7.5013 13 1 2.1878 -1.8079 6.4919 14 6 2.0400 -0.7212 -1.2492 15 7 1.6523 0.0354 -2.4424 16 6 1.9955 -0.4135 -3.6660 17 8 2.6248 -1.4441 -3.7793 18 6 1.5972 0.3651 -4.8933 19 6 2.0984 -0.3460 -6.1238 20 6 3.2455 -0.1003 -6.7765 21 7 3.3626 -0.9438 -7.8475 22 6 4.4871 -0.9608 -8.7863 23 6 2.2657 -1.7735 -7.9120 24 6 1.8849 -2.7920 -8.7799 25 6 0.6947 -3.4549 -8.5763 26 6 -0.1313 -3.1168 -7.5129 27 6 0.2225 -2.1189 -6.6493 28 6 1.4245 -1.4338 -6.8369 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -1.7197 1.2951 33 1 3.1263 -0.7995 1.2056 34 1 1.1489 0.8594 2.3517 35 1 0.6951 1.9159 5.4831 36 1 1.6054 -1.7197 -1.2952 37 1 3.1263 -0.7994 -1.2056 38 1 1.1487 0.8594 -2.3517 39 1 2.0325 1.3633 -4.8474 40 1 0.5109 0.4440 -4.9368 41 1 3.9667 0.6545 -6.4999 42 1 5.2504 -1.6509 -8.4265 43 1 4.1373 -1.2849 -9.7664 44 1 4.9104 0.0405 -8.8644 45 1 2.5205 -3.0623 -9.6101 46 1 0.4010 -4.2456 -9.2509 47 1 -1.0614 -3.6462 -7.3676 48 1 -0.4249 -1.8616 -5.8241 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753628403.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:27:19 Heat of formation + Delta-G solvation = 4.384614 kcal Electronic energy + Delta-G solvation = -26705.457853 eV Core-core repulsion = 22952.794875 eV Total energy + Delta-G solvation = -3752.662978 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.25509 -40.55495 -38.21663 -37.90016 -35.91670 -34.62853 -34.03736 -32.00766 -31.19800 -30.91324 -29.33812 -27.73228 -27.09878 -25.87734 -24.23646 -23.52244 -22.37387 -21.66920 -21.30394 -20.27152 -19.18431 -17.90313 -17.73300 -17.43944 -17.05556 -16.54209 -16.37143 -16.28482 -16.12300 -15.63233 -15.44972 -15.09721 -14.83781 -14.76453 -14.48250 -14.21509 -13.85277 -13.75104 -13.64149 -13.53904 -13.50036 -13.06143 -12.95541 -12.86009 -12.78629 -12.23871 -12.16683 -12.15565 -12.11740 -11.97629 -11.70314 -11.66397 -11.63322 -10.94458 -10.89163 -10.39145 -10.00267 -9.05714 -8.99193 -8.44467 -7.95317 -5.23526 0.24386 0.73732 1.47666 1.49084 1.57662 1.64976 1.78904 1.98541 2.42433 2.58213 3.03534 3.38103 3.76048 3.77736 3.86488 3.92263 3.98515 4.05740 4.12151 4.17060 4.30876 4.34640 4.42609 4.44518 4.45938 4.57329 4.63684 4.70066 4.72638 4.73559 4.81677 4.87769 4.93222 4.96381 5.01465 5.07719 5.13951 5.27556 5.36659 5.45917 5.50070 5.55263 5.59690 5.74060 5.85375 5.90418 6.27487 6.33003 6.46775 6.69662 7.34246 7.40256 8.09325 8.34287 9.28009 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.026120 B = 0.001816 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.712600 B =15416.120803 C =15790.667228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 H 0.081 0.919 4 C 0.156 3.844 5 N -0.741 5.741 6 C -0.247 4.247 7 H 0.072 0.928 8 C -0.075 4.075 9 N -0.967 5.967 10 Si 0.973 3.027 11 H -0.287 1.287 12 H -0.293 1.293 13 H -0.272 1.272 14 C 0.140 3.860 15 N -0.717 5.717 16 C 0.509 3.491 17 O -0.583 6.583 18 C -0.055 4.055 19 C -0.180 4.180 20 C 0.062 3.938 21 N -0.491 5.491 22 C 0.073 3.927 23 C 0.072 3.928 24 C -0.137 4.137 25 C -0.109 4.109 26 C -0.156 4.156 27 C -0.091 4.091 28 C -0.120 4.120 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.377 0.623 35 H 0.252 0.748 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.415 0.585 39 H 0.132 0.868 40 H 0.116 0.884 41 H 0.194 0.806 42 H 0.070 0.930 43 H 0.091 0.909 44 H 0.105 0.895 45 H 0.137 0.863 46 H 0.148 0.852 47 H 0.137 0.863 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.570 -1.763 -33.629 33.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.111 4.111 3 H 0.099 0.901 4 C 0.029 3.971 5 N -0.384 5.384 6 C -0.379 4.379 7 H 0.090 0.910 8 C -0.267 4.267 9 N -0.617 5.617 10 Si 0.802 3.198 11 H -0.214 1.214 12 H -0.220 1.220 13 H -0.197 1.197 14 C 0.015 3.985 15 N -0.370 5.370 16 C 0.297 3.703 17 O -0.463 6.463 18 C -0.095 4.095 19 C -0.188 4.188 20 C -0.064 4.064 21 N -0.174 5.174 22 C -0.067 4.067 23 C -0.034 4.034 24 C -0.158 4.158 25 C -0.128 4.128 26 C -0.175 4.175 27 C -0.109 4.109 28 C -0.125 4.125 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.210 0.790 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.252 0.748 39 H 0.150 0.850 40 H 0.134 0.866 41 H 0.211 0.789 42 H 0.089 0.911 43 H 0.109 0.891 44 H 0.123 0.877 45 H 0.155 0.845 46 H 0.166 0.834 47 H 0.155 0.845 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.401 -2.609 -33.822 34.007 hybrid contribution -0.089 0.229 1.458 1.478 sum 2.313 -2.380 -32.364 32.534 Atomic orbital electron populations 1.21722 0.93870 1.01781 1.01859 1.21319 0.97149 1.00061 0.92617 0.90107 1.20731 0.96443 0.94107 0.85856 1.42499 1.66789 1.27813 1.01296 1.19621 1.27849 1.05338 0.85114 0.90984 1.25547 1.01697 0.97944 1.01506 1.69802 1.44977 1.17828 1.29124 0.85143 0.76990 0.77902 0.79739 1.21379 1.21988 1.19697 1.21041 0.99144 0.94886 0.83399 1.45943 1.57913 1.28183 1.04981 1.21331 0.78371 0.85387 0.85224 1.90699 1.41727 1.26566 1.87260 1.19967 1.03976 0.99066 0.86457 1.19832 0.97543 1.01633 0.99748 1.22032 0.98406 0.97034 0.88952 1.43991 1.18028 1.29876 1.25471 1.22181 0.86951 1.05183 0.92386 1.18578 0.89353 0.96533 0.98982 1.20307 0.98878 0.96437 1.00133 1.21134 0.93553 0.99870 0.98252 1.20918 1.01386 0.98904 0.96313 1.20458 0.95136 0.96042 0.99304 1.19389 0.96383 0.99436 0.97248 0.93885 0.90283 0.93284 0.96368 0.96396 0.79008 0.93939 0.92598 0.92626 0.74771 0.85018 0.86552 0.78932 0.91142 0.89054 0.87672 0.84478 0.83386 0.84473 0.86250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.86 8.94 71.98 0.64 -3.21 16 2 C -0.09 -2.79 2.46 -10.79 -0.03 -2.82 16 3 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 4 C 0.16 6.28 5.65 86.38 0.49 6.77 16 5 N -0.74 -37.68 5.33 -343.46 -1.83 -39.51 16 6 C -0.25 -14.02 9.99 84.03 0.84 -13.18 16 7 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 8 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 9 N -0.97 -58.90 13.06 21.65 0.28 -58.61 16 10 Si 0.97 46.51 29.55 68.60 2.03 48.54 16 11 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 12 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 13 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 14 C 0.14 3.85 5.06 86.38 0.44 4.29 16 15 N -0.72 -15.42 5.28 -463.06 -2.45 -17.87 16 16 C 0.51 12.41 7.82 87.66 0.69 13.09 16 17 O -0.58 -20.31 16.03 -3.04 -0.05 -20.36 16 18 C -0.05 -0.90 6.23 29.10 0.18 -0.72 16 19 C -0.18 -3.88 4.81 -18.62 -0.09 -3.97 16 20 C 0.06 1.12 11.20 83.00 0.93 2.05 16 21 N -0.49 -8.84 3.18 -539.29 -1.71 -10.55 16 22 C 0.07 0.66 11.03 127.77 1.41 2.07 16 23 C 0.07 1.60 6.81 39.03 0.27 1.86 16 24 C -0.14 -2.54 9.96 22.37 0.22 -2.32 16 25 C -0.11 -1.90 10.01 22.30 0.22 -1.68 16 26 C -0.16 -3.06 9.97 22.04 0.22 -2.84 16 27 C -0.09 -2.10 10.05 22.23 0.22 -1.88 16 28 C -0.12 -2.97 6.35 -20.20 -0.13 -3.09 16 29 H 0.04 1.47 7.18 -2.38 -0.02 1.45 16 30 H 0.08 1.67 7.18 -2.39 -0.02 1.66 16 31 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.38 19.98 6.85 -92.71 -0.64 19.35 16 35 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 36 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.42 6.34 7.66 -92.71 -0.71 5.63 16 39 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.19 2.15 8.06 -2.91 -0.02 2.12 16 42 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 43 H 0.09 0.58 8.10 -2.39 -0.02 0.56 16 44 H 0.10 0.45 8.13 -2.39 -0.02 0.43 16 45 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 46 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 47 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 48 H 0.12 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -79.39 400.43 2.88 -76.51 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: -0.38 Total: 31.27 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 6.99 Total: -9.41 kcal Atomic # 7 Polarization: -120.84 SS G_CDS: -5.71 Total: -126.55 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.05 Total: -20.36 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -79.39 2.88 -76.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753628403.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.891 kcal (2) G-P(sol) polarization free energy of solvation -79.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds