Wall clock time and date at job start Sat Apr 11 2020 02:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99841 * 2 1 4 4 H 1.48502 * 109.47287 * 240.00142 * 3 2 1 5 5 H 1.48497 * 109.47421 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47237 * 120.00377 * 3 2 1 7 7 C 1.37873 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99807 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00011 * 0.02562 * 7 2 1 10 10 C 1.53117 * 109.52323 * 179.97438 * 9 7 2 11 11 C 1.53034 * 109.28160 * 177.62019 * 10 9 7 12 12 N 1.46848 * 109.52472 * 300.82147 * 11 10 9 13 13 C 1.46899 * 111.00392 * 185.83753 * 12 11 10 14 14 C 1.50700 * 109.47030 * 170.00105 * 13 12 11 15 15 C 1.38285 * 119.97610 * 90.00180 * 14 13 12 16 16 C 1.38240 * 120.11476 * 180.02562 * 15 14 13 17 17 C 1.38170 * 120.05668 * 359.97438 * 16 15 14 18 18 C 1.38713 * 119.94153 * 359.97438 * 17 16 15 19 19 O 1.35895 * 120.05422 * 180.02562 * 18 17 16 20 20 C 1.42910 * 117.00189 * 354.39897 * 19 18 17 21 21 C 1.54892 * 110.48312 * 89.14357 * 20 19 18 22 22 C 1.54889 * 102.74499 * 156.62195 * 21 20 19 23 23 C 1.54268 * 104.19632 * 322.05834 * 22 21 20 24 24 C 1.53871 * 106.59950 * 23.60785 * 23 22 21 25 25 C 1.38125 * 119.97178 * 270.25037 * 14 13 12 26 26 C 1.46847 * 111.19780 * 61.73678 * 12 11 10 27 27 C 1.53041 * 109.52365 * 298.26248 * 26 12 11 28 28 H 0.97003 * 119.99655 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.52599 * 59.86929 * 9 7 2 30 30 H 1.09001 * 109.50470 * 57.68028 * 10 9 7 31 31 H 1.09003 * 109.53951 * 297.58401 * 10 9 7 32 32 H 1.09004 * 109.46681 * 180.80709 * 11 10 9 33 33 H 1.08998 * 109.45364 * 60.82815 * 11 10 9 34 34 H 1.08998 * 109.46748 * 50.00118 * 13 12 11 35 35 H 1.08993 * 109.46798 * 289.99777 * 13 12 11 36 36 H 1.08005 * 119.94382 * 359.97438 * 15 14 13 37 37 H 1.08001 * 119.97628 * 179.97438 * 16 15 14 38 38 H 1.08001 * 120.02893 * 179.97438 * 17 16 15 39 39 H 1.09004 * 110.53504 * 326.53560 * 20 19 18 40 40 H 1.09001 * 110.75354 * 274.93912 * 21 20 19 41 41 H 1.09001 * 110.75305 * 38.30879 * 21 20 19 42 42 H 1.09001 * 110.48443 * 203.37710 * 22 21 20 43 43 H 1.08998 * 110.48751 * 80.73686 * 22 21 20 44 44 H 1.08999 * 110.03074 * 264.32496 * 23 22 21 45 45 H 1.09005 * 110.07263 * 142.91766 * 23 22 21 46 46 H 1.08994 * 110.03681 * 240.71497 * 24 23 22 47 47 H 1.09000 * 110.07133 * 119.30459 * 24 23 22 48 48 H 1.08006 * 120.02976 * 0.03108 * 25 14 13 49 49 H 1.09000 * 109.46045 * 58.27584 * 26 12 11 50 50 H 1.09005 * 109.46507 * 178.24136 * 26 12 11 51 51 H 1.08999 * 109.50277 * 299.23474 * 27 26 12 52 52 H 1.09007 * 109.53329 * 179.13919 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2450 -3.6638 -0.0027 11 6 1.4752 -4.9851 0.0561 12 7 0.6534 -5.0206 1.2725 13 6 0.0070 -6.3299 1.4333 14 6 -0.6220 -6.4152 2.8001 15 6 -1.9296 -6.0053 2.9857 16 6 -2.5093 -6.0818 4.2383 17 6 -1.7832 -6.5687 5.3083 18 6 -0.4717 -6.9815 5.1246 19 8 0.2443 -7.4612 6.1752 20 6 -0.3720 -7.3985 7.4631 21 6 -1.1966 -8.6816 7.7325 22 6 -1.2584 -8.7296 9.2794 23 6 0.1346 -8.2425 9.7290 24 6 0.6982 -7.3962 8.5741 25 6 0.1097 -6.8979 3.8675 26 6 -0.3404 -3.9395 1.2737 27 6 0.3753 -2.5869 1.2513 28 1 -0.4850 0.8401 0.0004 29 1 0.6226 -2.5562 -0.8905 30 1 2.8991 -3.5848 0.8656 31 1 2.8435 -3.6315 -0.9132 32 1 2.1805 -5.8161 0.0699 33 1 0.8316 -5.0695 -0.8195 34 1 0.7520 -7.1184 1.3263 35 1 -0.7625 -6.4512 0.6710 36 1 -2.4987 -5.6240 2.1507 37 1 -3.5306 -5.7607 4.3808 38 1 -2.2364 -6.6278 6.2868 39 1 -1.0051 -6.5146 7.5413 40 1 -2.1969 -8.5941 7.3083 41 1 -0.6844 -9.5596 7.3389 42 1 -1.4354 -9.7489 9.6226 43 1 -2.0347 -8.0608 9.6511 44 1 0.7853 -9.0962 9.9185 45 1 0.0456 -7.6341 10.6290 46 1 1.6225 -7.8390 8.2032 47 1 0.8826 -6.3767 8.9128 48 1 1.1324 -7.2137 3.7231 49 1 -0.9754 -4.0290 0.3924 50 1 -0.9538 -4.0109 2.1719 51 1 1.0000 -2.4910 2.1393 52 1 -0.3623 -1.7844 1.2367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542854721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:26:14 Heat of formation + Delta-G solvation = -30.264788 kcal Electronic energy + Delta-G solvation = -28090.711911 eV Core-core repulsion = 24440.086765 eV Total energy + Delta-G solvation = -3650.625146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.44824 -38.88650 -37.72678 -36.34939 -34.02417 -32.01360 -30.63067 -29.98846 -29.63578 -29.08370 -28.03703 -26.49211 -24.40756 -22.68928 -22.11303 -21.87080 -21.16550 -20.83471 -19.97061 -18.52554 -18.05715 -16.47387 -16.32410 -15.92734 -15.69982 -15.33527 -15.17352 -14.68752 -14.40503 -14.29635 -13.83151 -13.70349 -13.55390 -13.23160 -12.88289 -12.68314 -12.55464 -12.43354 -12.19335 -11.99903 -11.61431 -11.57741 -11.52097 -11.41383 -11.32291 -11.12444 -10.90797 -10.89793 -10.67029 -10.63738 -10.60339 -10.38966 -10.15937 -9.92011 -9.37147 -8.93857 -8.73332 -8.65836 -8.24629 -8.08886 -7.68642 -5.92697 -3.97732 1.39953 1.55049 3.09040 3.35812 3.40010 3.43138 3.80009 4.15260 4.21891 4.48813 4.50707 4.63856 4.77197 4.86098 4.95106 5.03949 5.07865 5.14450 5.18180 5.24391 5.30957 5.37476 5.44128 5.47261 5.52581 5.54769 5.66230 5.74352 5.75955 5.79606 5.81069 5.91522 5.92491 5.95996 6.10925 6.17944 6.27401 6.36725 6.39079 6.51345 6.67607 6.68775 6.74313 6.85593 6.90993 7.13217 7.22515 7.47630 7.49712 7.66937 7.73882 7.88332 8.10790 8.21429 8.53603 9.05664 9.66227 11.13473 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.016021 B = 0.002399 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.299936 B =11666.424752 C =12292.616375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.510 4.510 8 H 0.053 0.947 9 C 0.048 3.952 10 C -0.106 4.106 11 C 0.061 3.939 12 N -0.529 5.529 13 C 0.089 3.911 14 C -0.027 4.027 15 C -0.148 4.148 16 C -0.082 4.082 17 C -0.214 4.214 18 C 0.126 3.874 19 O -0.308 6.308 20 C 0.079 3.921 21 C -0.147 4.147 22 C -0.124 4.124 23 C -0.122 4.122 24 C -0.122 4.122 25 C -0.131 4.131 26 C 0.054 3.946 27 C -0.103 4.103 28 H 0.259 0.741 29 H 0.020 0.980 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.024 0.976 34 H 0.078 0.922 35 H 0.039 0.961 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.129 0.871 49 H 0.021 0.979 50 H 0.061 0.939 51 H 0.042 0.958 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.014 -18.695 15.315 24.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.144 4.144 11 C -0.067 4.067 12 N -0.254 5.254 13 C -0.038 4.038 14 C -0.028 4.028 15 C -0.166 4.166 16 C -0.101 4.101 17 C -0.233 4.233 18 C 0.082 3.918 19 O -0.222 6.222 20 C 0.022 3.978 21 C -0.185 4.185 22 C -0.161 4.161 23 C -0.160 4.160 24 C -0.159 4.159 25 C -0.150 4.150 26 C -0.073 4.073 27 C -0.141 4.141 28 H 0.069 0.931 29 H 0.038 0.962 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.042 0.958 34 H 0.096 0.904 35 H 0.057 0.943 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.098 0.902 47 H 0.092 0.908 48 H 0.147 0.853 49 H 0.039 0.961 50 H 0.080 0.920 51 H 0.061 0.939 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.647 -18.567 15.704 24.758 hybrid contribution -0.358 0.948 -0.565 1.160 sum -5.005 -17.619 15.139 23.763 Atomic orbital electron populations 1.69871 1.05848 1.26330 1.51128 1.24966 0.94840 0.98962 0.95270 0.86703 0.79626 0.83363 0.78551 1.20396 1.21404 1.20326 1.21177 0.92834 0.90708 1.50062 0.92834 1.18679 0.92704 0.91710 0.93966 1.21679 0.98715 0.93727 1.00290 1.22130 0.95672 0.99375 0.89485 1.62026 1.23606 1.01381 1.38397 1.21046 0.97259 0.93435 0.92094 1.19577 0.93088 0.95175 0.94953 1.21002 0.95377 1.02677 0.97582 1.20855 0.99366 0.97517 0.92314 1.21170 0.94505 1.07594 1.00014 1.18934 0.90379 0.94747 0.87779 1.86107 1.43651 1.77779 1.14637 1.23338 0.94874 0.98305 0.81276 1.23040 1.00484 0.98551 0.96419 1.22282 0.97301 1.01637 0.94924 1.22088 0.96548 0.99606 0.97711 1.22174 0.98845 1.01187 0.93740 1.20243 1.00453 1.04640 0.89661 1.22373 0.93211 0.92910 0.98840 1.21646 1.00147 0.93028 0.99303 0.93104 0.96216 0.92471 0.93174 0.92393 0.95785 0.90390 0.94309 0.86094 0.86065 0.85873 0.90220 0.90998 0.90219 0.91149 0.91333 0.91334 0.91365 0.90152 0.90771 0.85319 0.96123 0.92040 0.93926 0.89039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.75 11.37 55.43 0.63 -25.12 16 2 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.51 -14.23 8.56 -34.44 -0.29 -14.52 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.05 1.21 2.16 -91.65 -0.20 1.02 16 10 C -0.11 -2.28 5.32 -26.65 -0.14 -2.42 16 11 C 0.06 1.11 5.46 -3.83 -0.02 1.09 16 12 N -0.53 -9.68 4.65 -236.11 -1.10 -10.77 16 13 C 0.09 1.34 5.12 -4.98 -0.03 1.31 16 14 C -0.03 -0.40 4.88 -104.65 -0.51 -0.91 16 15 C -0.15 -2.04 7.87 -39.56 -0.31 -2.35 16 16 C -0.08 -1.02 10.04 -39.61 -0.40 -1.42 16 17 C -0.21 -2.62 8.84 -39.43 -0.35 -2.97 16 18 C 0.13 1.72 6.66 -39.22 -0.26 1.46 16 19 O -0.31 -3.93 9.85 -19.41 -0.19 -4.12 16 20 C 0.08 0.75 2.68 -25.07 -0.07 0.69 16 21 C -0.15 -1.17 6.38 -24.74 -0.16 -1.33 16 22 C -0.12 -0.77 6.83 -25.07 -0.17 -0.94 16 23 C -0.12 -0.77 6.80 -25.61 -0.17 -0.94 16 24 C -0.12 -1.00 6.56 -25.62 -0.17 -1.16 16 25 C -0.13 -1.90 9.64 -39.43 -0.38 -2.28 16 26 C 0.05 1.09 5.16 -3.83 -0.02 1.07 16 27 C -0.10 -2.50 5.12 -26.65 -0.14 -2.64 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.92 8.02 -51.93 -0.42 0.51 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 1.05 7.93 -51.93 -0.41 0.63 16 35 H 0.04 0.56 8.07 -51.93 -0.42 0.14 16 36 H 0.12 1.59 7.95 -52.48 -0.42 1.18 16 37 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.12 1.24 5.48 -52.49 -0.29 0.95 16 39 H 0.08 0.75 6.28 -51.93 -0.33 0.42 16 40 H 0.07 0.55 7.59 -51.93 -0.39 0.16 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.13 1.81 8.06 -52.48 -0.42 1.38 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.06 1.18 5.75 -51.93 -0.30 0.88 16 51 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 52 H 0.09 2.46 6.18 -51.92 -0.32 2.14 16 LS Contribution 397.30 15.07 5.99 5.99 Total: -1.00 -29.61 397.30 -12.74 -42.36 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -9.17 Total: 0.72 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: -3.88 Total: -25.65 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: -0.47 Total: -35.89 kcal Atomic # 8 Polarization: -3.93 SS G_CDS: -0.19 Total: -4.12 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.61 -12.74 -42.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542854721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.092 kcal (2) G-P(sol) polarization free energy of solvation -29.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds