Wall clock time and date at job start Sat Apr 11 2020 02:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00090 * 2 1 4 4 C 1.50698 * 109.47179 * 76.21624 * 3 2 1 5 5 C 1.38319 * 119.88291 * 89.99503 * 4 3 2 6 6 C 1.38028 * 120.11900 * 180.02562 * 5 4 3 7 7 C 1.39299 * 119.87908 * 359.97438 * 6 5 4 8 8 C 1.48470 * 120.11652 * 179.97438 * 7 6 5 9 9 N 1.34045 * 126.67195 * 0.02835 * 8 7 6 10 10 N 1.28985 * 107.26719 * 179.97438 * 9 8 7 11 11 N 1.28731 * 108.94234 * 0.02562 * 10 9 8 12 12 H 0.97001 * 125.33875 * 179.97438 * 11 10 9 13 13 N 1.28864 * 109.31912 * 0.02562 * 11 10 9 14 14 C 1.39303 * 119.77043 * 0.26028 * 7 6 5 15 15 C 1.38032 * 119.87330 * 359.48266 * 14 7 6 16 16 C 1.46899 * 110.99965 * 236.04852 * 2 1 3 17 17 C 1.52998 * 109.47084 * 210.66378 * 16 2 1 18 18 C 1.53002 * 109.47215 * 294.31010 * 17 16 2 19 19 C 1.53001 * 109.47419 * 54.31368 * 17 16 2 20 20 C 1.53005 * 109.47140 * 174.31670 * 17 16 2 21 21 C 1.50701 * 109.47058 * 180.02562 * 20 17 16 22 22 H 1.07996 * 120.00017 * 359.97438 * 21 20 17 23 23 C 1.37878 * 119.99648 * 179.97438 * 21 20 17 24 24 N 1.31515 * 119.99630 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00441 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47148 * 89.99887 * 25 23 21 27 27 H 1.48494 * 109.47347 * 210.00161 * 25 23 21 28 28 H 1.48506 * 109.46844 * 330.00271 * 25 23 21 29 29 H 1.09000 * 109.47127 * 63.90730 * 1 2 3 30 30 H 1.09000 * 109.47110 * 183.91177 * 1 2 3 31 31 H 1.08999 * 109.47091 * 303.91240 * 1 2 3 32 32 H 1.08996 * 109.47261 * 316.21603 * 3 2 1 33 33 H 1.08998 * 109.47047 * 196.21286 * 3 2 1 34 34 H 1.07995 * 119.94025 * 0.02562 * 5 4 3 35 35 H 1.07997 * 120.05948 * 180.02562 * 6 5 4 36 36 H 1.07999 * 120.06353 * 179.74780 * 14 7 6 37 37 H 1.08007 * 119.93894 * 180.23451 * 15 14 7 38 38 H 1.09006 * 109.47159 * 330.66328 * 16 2 1 39 39 H 1.09001 * 109.47057 * 90.66375 * 16 2 1 40 40 H 1.09007 * 109.46691 * 70.71925 * 18 17 16 41 41 H 1.08997 * 109.47411 * 190.71693 * 18 17 16 42 42 H 1.08994 * 109.47077 * 310.72196 * 18 17 16 43 43 H 1.08998 * 109.46801 * 65.04944 * 19 17 16 44 44 H 1.08995 * 109.46917 * 185.04882 * 19 17 16 45 45 H 1.08996 * 109.46801 * 305.04981 * 19 17 16 46 46 H 1.09003 * 109.46614 * 299.99561 * 20 17 16 47 47 H 1.08998 * 109.47171 * 59.99724 * 20 17 16 48 48 H 0.97003 * 119.99961 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.8594 1.9617 1.3799 5 6 2.8846 1.8142 2.2967 6 6 2.7650 2.3524 3.5620 7 6 1.6094 3.0456 3.9149 8 6 1.4749 3.6262 5.2747 9 7 2.3772 3.5651 6.2642 10 7 1.8787 4.1904 7.2761 11 7 0.7124 4.6343 6.9599 12 1 0.1266 5.1394 7.5453 13 7 0.4447 4.3013 5.7442 14 6 0.5779 3.1872 2.9894 15 6 0.7102 2.6495 1.7250 16 6 1.9954 -0.7659 -1.1376 17 6 3.3365 -1.3937 -0.7528 18 6 4.3679 -0.2886 -0.5162 19 6 3.1668 -2.2153 0.5266 20 6 3.8164 -2.3051 -1.8843 21 6 5.1370 -2.9240 -1.5050 22 1 5.5892 -2.6903 -0.5525 23 6 5.7681 -3.7885 -2.3742 24 7 6.9209 -4.3282 -2.0434 25 14 4.9857 -4.1933 -4.0214 26 1 5.4515 -3.2212 -5.0428 27 1 5.3758 -5.5664 -4.4307 28 1 3.5078 -4.1139 -3.9002 29 1 -0.3633 0.4520 -0.9229 30 1 -0.3633 -1.0253 0.0701 31 1 -0.3633 0.5734 0.8528 32 1 1.4331 1.9765 -0.7110 33 1 3.0469 1.3570 -0.2869 34 1 3.7802 1.2769 2.0219 35 1 3.5662 2.2369 4.2770 36 1 -0.3217 3.7202 3.2593 37 1 -0.0874 2.7619 1.0053 38 1 1.2892 -1.5524 -1.4041 39 1 2.1367 -0.1006 -1.9893 40 1 4.1259 0.2431 0.4041 41 1 5.3606 -0.7303 -0.4303 42 1 4.3517 0.4088 -1.3537 43 1 2.5007 -3.0561 0.3328 44 1 4.1383 -2.5886 0.8503 45 1 2.7403 -1.5866 1.3082 46 1 3.0816 -3.0925 -2.0529 47 1 3.9373 -1.7198 -2.7958 48 1 7.3651 -4.9362 -2.6550 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825957607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:25:25 Heat of formation + Delta-G solvation = 150.186120 kcal Electronic energy + Delta-G solvation = -27680.339687 eV Core-core repulsion = 23966.291888 eV Total energy + Delta-G solvation = -3714.047799 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.191 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.71400 -39.76621 -38.13088 -35.32832 -34.57917 -33.77502 -32.17792 -31.25471 -31.11445 -28.02936 -27.41656 -26.47954 -26.11663 -25.00137 -24.19026 -22.86645 -22.48518 -21.54320 -20.68463 -19.48344 -17.90173 -17.40354 -17.03298 -16.73108 -15.76265 -15.63743 -15.04197 -14.74118 -14.49150 -14.15703 -14.01596 -13.58543 -13.35289 -13.30512 -13.07862 -12.97750 -12.60851 -12.44170 -12.20817 -12.09588 -11.90588 -11.68722 -11.63098 -11.46447 -11.26675 -11.11450 -11.09072 -10.90034 -10.78017 -10.50943 -10.44248 -10.28642 -9.76424 -9.62339 -9.16986 -9.05305 -8.90645 -8.68209 -8.46893 -8.03934 -5.97117 -3.92856 0.50691 0.94683 1.30150 1.95304 2.14875 3.33466 3.41502 3.44606 3.44720 3.62448 3.95049 4.29339 4.50518 4.75962 4.76482 4.86647 5.03627 5.17268 5.22871 5.29949 5.34046 5.36428 5.44706 5.55176 5.58311 5.69212 5.80054 5.86010 5.91982 5.97092 5.98393 6.04957 6.16921 6.21933 6.26298 6.30254 6.50067 6.54850 6.66744 6.72770 6.78870 6.87485 7.14122 7.19838 7.22009 7.24371 7.37067 7.41464 7.54421 7.87761 7.88877 8.63277 9.09510 9.66141 11.15990 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.023429 B = 0.002319 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.794051 B =12070.173955 C =12867.822464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.527 5.527 3 C 0.069 3.931 4 C -0.040 4.040 5 C -0.100 4.100 6 C -0.073 4.073 7 C -0.031 4.031 8 C 0.227 3.773 9 N -0.268 5.268 10 N -0.051 5.051 11 N -0.231 5.231 12 H 0.474 0.526 13 N -0.299 5.299 14 C -0.080 4.080 15 C -0.121 4.121 16 C 0.062 3.938 17 C -0.042 4.042 18 C -0.138 4.138 19 C -0.116 4.116 20 C -0.006 4.006 21 C -0.504 4.504 22 H 0.079 0.921 23 C 0.063 3.937 24 N -0.906 5.906 25 Si 0.875 3.125 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.267 1.267 29 H 0.020 0.980 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.106 0.894 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.066 0.934 39 H 0.034 0.966 40 H 0.045 0.955 41 H 0.072 0.928 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.056 0.944 45 H 0.050 0.950 46 H 0.013 0.987 47 H 0.007 0.993 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.295 19.148 12.539 28.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.250 5.250 3 C -0.058 4.058 4 C -0.042 4.042 5 C -0.119 4.119 6 C -0.093 4.093 7 C -0.035 4.035 8 C -0.052 4.052 9 N -0.141 5.141 10 N -0.046 5.046 11 N -0.076 5.076 12 H 0.328 0.672 13 N -0.151 5.151 14 C -0.101 4.101 15 C -0.139 4.139 16 C -0.066 4.066 17 C -0.043 4.043 18 C -0.194 4.194 19 C -0.173 4.173 20 C -0.044 4.044 21 C -0.542 4.542 22 H 0.096 0.904 23 C -0.137 4.137 24 N -0.545 5.545 25 Si 0.703 3.297 26 H -0.206 1.206 27 H -0.216 1.216 28 H -0.192 1.192 29 H 0.038 0.962 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.124 0.876 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.084 0.916 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.032 0.968 47 H 0.025 0.975 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.807 18.924 13.520 28.121 hybrid contribution -1.246 0.296 -1.732 2.154 sum -17.053 19.220 11.789 28.270 Atomic orbital electron populations 1.22486 0.88231 1.02124 0.99825 1.61909 1.06810 1.11733 1.44552 1.21567 1.03134 0.89025 0.92060 1.20043 0.93381 0.94615 0.96130 1.21116 0.99647 0.98761 0.92353 1.21192 0.96293 0.95020 0.96782 1.17200 0.96948 1.02374 0.86956 1.23795 0.86837 0.97799 0.96819 1.76114 1.24821 1.16357 0.96801 1.78921 0.95538 1.09018 1.21136 1.47720 1.13731 1.37109 1.09053 0.67165 1.74917 1.25851 1.18272 0.96013 1.21040 0.97676 0.98603 0.92738 1.20971 0.97747 0.99098 0.96130 1.22404 0.98054 0.96160 0.89937 1.20354 0.91430 0.95202 0.97266 1.22037 1.01041 0.97518 0.98835 1.21582 1.01112 0.98213 0.96431 1.19653 0.97149 0.94251 0.93303 1.21134 1.03051 1.25367 1.04679 0.90352 1.25025 0.94742 0.95895 0.98018 1.69911 1.16080 1.31756 1.36789 0.86857 0.80352 0.77518 0.84968 1.20557 1.21629 1.19183 0.96186 0.91464 0.91602 0.94117 0.87640 0.84549 0.84701 0.85375 0.85736 0.91576 0.94734 0.93595 0.90931 0.94498 0.94525 0.92542 0.93103 0.96848 0.97488 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.20 60.06 0.55 0.80 16 2 N -0.53 -6.96 3.41 -244.37 -0.83 -7.79 16 3 C 0.07 0.82 4.29 -4.98 -0.02 0.79 16 4 C -0.04 -0.45 5.15 -104.57 -0.54 -0.98 16 5 C -0.10 -1.14 9.65 -39.63 -0.38 -1.53 16 6 C -0.07 -0.81 9.70 -39.26 -0.38 -1.19 16 7 C -0.03 -0.34 5.88 -104.89 -0.62 -0.96 16 8 C 0.23 2.54 7.94 -156.30 -1.24 1.30 16 9 N -0.27 -3.20 12.23 32.16 0.39 -2.81 16 10 N -0.05 -0.50 13.47 60.35 0.81 0.31 16 11 N -0.23 -1.58 7.90 60.35 0.48 -1.11 16 12 H 0.47 0.87 8.96 -340.37 -3.05 -2.18 16 13 N -0.30 -2.80 12.08 32.17 0.39 -2.41 16 14 C -0.08 -0.79 9.70 -39.26 -0.38 -1.17 16 15 C -0.12 -1.18 8.29 -39.63 -0.33 -1.50 16 16 C 0.06 0.95 4.23 -3.83 -0.02 0.94 16 17 C -0.04 -0.78 0.61 -154.50 -0.09 -0.87 16 18 C -0.14 -2.41 6.81 37.16 0.25 -2.16 16 19 C -0.12 -2.18 7.97 37.16 0.30 -1.89 16 20 C -0.01 -0.13 3.11 -27.88 -0.09 -0.22 16 21 C -0.50 -13.72 8.11 -34.44 -0.28 -14.00 16 22 H 0.08 2.28 6.00 -52.49 -0.31 1.96 16 23 C 0.06 1.82 5.47 -17.82 -0.10 1.72 16 24 N -0.91 -27.64 13.96 55.43 0.77 -26.87 16 25 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 29 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.76 8.06 -51.93 -0.42 0.34 16 31 H 0.07 0.67 6.18 -51.93 -0.32 0.35 16 32 H 0.04 0.44 7.93 -51.93 -0.41 0.03 16 33 H 0.11 1.33 4.21 -51.93 -0.22 1.11 16 34 H 0.14 1.55 6.40 -52.49 -0.34 1.22 16 35 H 0.14 1.43 7.89 -52.49 -0.41 1.01 16 36 H 0.13 1.07 7.88 -52.49 -0.41 0.66 16 37 H 0.12 1.00 7.79 -52.48 -0.41 0.59 16 38 H 0.07 1.03 7.72 -51.93 -0.40 0.63 16 39 H 0.03 0.52 7.79 -51.93 -0.40 0.12 16 40 H 0.05 0.69 4.67 -51.93 -0.24 0.45 16 41 H 0.07 1.48 6.34 -51.93 -0.33 1.15 16 42 H 0.04 0.60 7.54 -51.93 -0.39 0.21 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 1.18 6.79 -51.93 -0.35 0.83 16 45 H 0.05 0.87 7.28 -51.93 -0.38 0.49 16 46 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 47 H 0.01 0.16 7.57 -51.93 -0.39 -0.23 16 48 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 376.18 15.07 5.67 5.67 Total: -1.00 -32.28 376.18 -9.94 -42.22 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -9.59 Total: -3.26 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -3.36 Total: -20.91 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 2.01 Total: -40.67 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.28 -9.94 -42.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825957607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.405 kcal (2) G-P(sol) polarization free energy of solvation -32.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds