Wall clock time and date at job start Sat Apr 11 2020 02:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00090 * 2 1 4 4 C 1.50698 * 109.47179 * 76.21624 * 3 2 1 5 5 C 1.38319 * 119.88291 * 89.99503 * 4 3 2 6 6 C 1.38028 * 120.11900 * 180.02562 * 5 4 3 7 7 C 1.39299 * 119.87908 * 359.97438 * 6 5 4 8 8 C 1.48470 * 120.11652 * 179.97438 * 7 6 5 9 9 N 1.34045 * 126.67195 * 0.02835 * 8 7 6 10 10 N 1.28985 * 107.26719 * 179.97438 * 9 8 7 11 11 N 1.28731 * 108.94234 * 0.02562 * 10 9 8 12 12 H 0.97001 * 125.33875 * 179.97438 * 11 10 9 13 13 N 1.28864 * 109.31912 * 0.02562 * 11 10 9 14 14 C 1.39303 * 119.77043 * 0.26028 * 7 6 5 15 15 C 1.38032 * 119.87330 * 359.48266 * 14 7 6 16 16 C 1.46899 * 110.99965 * 236.04852 * 2 1 3 17 17 C 1.52998 * 109.47084 * 210.66378 * 16 2 1 18 18 C 1.53002 * 109.47215 * 294.31010 * 17 16 2 19 19 C 1.53001 * 109.47419 * 54.31368 * 17 16 2 20 20 C 1.53005 * 109.47140 * 174.31670 * 17 16 2 21 21 C 1.50701 * 109.47058 * 180.02562 * 20 17 16 22 22 H 1.07996 * 120.00017 * 359.97438 * 21 20 17 23 23 C 1.37878 * 119.99648 * 179.97438 * 21 20 17 24 24 N 1.31515 * 119.99630 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00441 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47148 * 89.99887 * 25 23 21 27 27 H 1.48494 * 109.47347 * 210.00161 * 25 23 21 28 28 H 1.48506 * 109.46844 * 330.00271 * 25 23 21 29 29 H 1.09000 * 109.47127 * 63.90730 * 1 2 3 30 30 H 1.09000 * 109.47110 * 183.91177 * 1 2 3 31 31 H 1.08999 * 109.47091 * 303.91240 * 1 2 3 32 32 H 1.08996 * 109.47261 * 316.21603 * 3 2 1 33 33 H 1.08998 * 109.47047 * 196.21286 * 3 2 1 34 34 H 1.07995 * 119.94025 * 0.02562 * 5 4 3 35 35 H 1.07997 * 120.05948 * 180.02562 * 6 5 4 36 36 H 1.07999 * 120.06353 * 179.74780 * 14 7 6 37 37 H 1.08007 * 119.93894 * 180.23451 * 15 14 7 38 38 H 1.09006 * 109.47159 * 330.66328 * 16 2 1 39 39 H 1.09001 * 109.47057 * 90.66375 * 16 2 1 40 40 H 1.09007 * 109.46691 * 70.71925 * 18 17 16 41 41 H 1.08997 * 109.47411 * 190.71693 * 18 17 16 42 42 H 1.08994 * 109.47077 * 310.72196 * 18 17 16 43 43 H 1.08998 * 109.46801 * 65.04944 * 19 17 16 44 44 H 1.08995 * 109.46917 * 185.04882 * 19 17 16 45 45 H 1.08996 * 109.46801 * 305.04981 * 19 17 16 46 46 H 1.09003 * 109.46614 * 299.99561 * 20 17 16 47 47 H 1.08998 * 109.47171 * 59.99724 * 20 17 16 48 48 H 0.97003 * 119.99961 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.8594 1.9617 1.3799 5 6 2.8846 1.8142 2.2967 6 6 2.7650 2.3524 3.5620 7 6 1.6094 3.0456 3.9149 8 6 1.4749 3.6262 5.2747 9 7 2.3772 3.5651 6.2642 10 7 1.8787 4.1904 7.2761 11 7 0.7124 4.6343 6.9599 12 1 0.1266 5.1394 7.5453 13 7 0.4447 4.3013 5.7442 14 6 0.5779 3.1872 2.9894 15 6 0.7102 2.6495 1.7250 16 6 1.9954 -0.7659 -1.1376 17 6 3.3365 -1.3937 -0.7528 18 6 4.3679 -0.2886 -0.5162 19 6 3.1668 -2.2153 0.5266 20 6 3.8164 -2.3051 -1.8843 21 6 5.1370 -2.9240 -1.5050 22 1 5.5892 -2.6903 -0.5525 23 6 5.7681 -3.7885 -2.3742 24 7 6.9209 -4.3282 -2.0434 25 14 4.9857 -4.1933 -4.0214 26 1 5.4515 -3.2212 -5.0428 27 1 5.3758 -5.5664 -4.4307 28 1 3.5078 -4.1139 -3.9002 29 1 -0.3633 0.4520 -0.9229 30 1 -0.3633 -1.0253 0.0701 31 1 -0.3633 0.5734 0.8528 32 1 1.4331 1.9765 -0.7110 33 1 3.0469 1.3570 -0.2869 34 1 3.7802 1.2769 2.0219 35 1 3.5662 2.2369 4.2770 36 1 -0.3217 3.7202 3.2593 37 1 -0.0874 2.7619 1.0053 38 1 1.2892 -1.5524 -1.4041 39 1 2.1367 -0.1006 -1.9893 40 1 4.1259 0.2431 0.4041 41 1 5.3606 -0.7303 -0.4303 42 1 4.3517 0.4088 -1.3537 43 1 2.5007 -3.0561 0.3328 44 1 4.1383 -2.5886 0.8503 45 1 2.7403 -1.5866 1.3082 46 1 3.0816 -3.0925 -2.0529 47 1 3.9373 -1.7198 -2.7958 48 1 7.3651 -4.9362 -2.6550 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825957607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:25:24 Heat of formation + Delta-G solvation = 130.269514 kcal Electronic energy + Delta-G solvation = -27681.203336 eV Core-core repulsion = 23966.291888 eV Total energy + Delta-G solvation = -3714.911448 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.45066 -40.65583 -39.30573 -36.62298 -35.38314 -34.64364 -34.17192 -32.09715 -31.92349 -29.79770 -28.55030 -27.71554 -27.42212 -25.77505 -25.27740 -24.25756 -23.30746 -22.71826 -21.58780 -20.17699 -19.45034 -18.80902 -18.13261 -17.80437 -16.71719 -16.59819 -16.24594 -15.97482 -15.79320 -15.35661 -15.04952 -14.76623 -14.60412 -14.40842 -14.32478 -14.01209 -13.88384 -13.70367 -13.51490 -13.26688 -12.92655 -12.84472 -12.75291 -12.49449 -12.39587 -12.28349 -12.21114 -12.12637 -12.02237 -11.99645 -11.79225 -11.70928 -11.59537 -11.22567 -10.83764 -10.70502 -10.65342 -9.84135 -9.50485 -9.04053 -8.17632 -6.17287 -0.26646 0.18851 0.51464 1.33091 1.37931 1.40074 1.44056 1.50946 2.42751 2.69413 2.78495 3.17440 3.18970 3.32214 3.89976 3.98210 4.09513 4.14403 4.23030 4.29242 4.35088 4.44427 4.48215 4.51882 4.57914 4.68510 4.77537 4.82181 4.87339 4.94503 4.98544 5.02258 5.08506 5.15000 5.16361 5.19229 5.28556 5.44114 5.47322 5.49997 5.53417 5.62844 5.63861 5.68667 5.73989 5.83490 5.90026 6.00040 6.23322 6.31774 6.48497 6.90563 7.12641 7.44736 8.98673 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.023429 B = 0.002319 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.794051 B =12070.173955 C =12867.822464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.538 5.538 3 C 0.072 3.928 4 C -0.047 4.047 5 C -0.111 4.111 6 C -0.082 4.082 7 C -0.039 4.039 8 C 0.213 3.787 9 N -0.299 5.299 10 N -0.059 5.059 11 N -0.201 5.201 12 H 0.494 0.506 13 N -0.295 5.295 14 C -0.076 4.076 15 C -0.113 4.113 16 C 0.073 3.927 17 C -0.041 4.041 18 C -0.129 4.129 19 C -0.105 4.105 20 C -0.004 4.004 21 C -0.499 4.499 22 H 0.043 0.957 23 C -0.003 4.003 24 N -0.956 5.956 25 Si 0.941 3.059 26 H -0.270 1.270 27 H -0.291 1.291 28 H -0.248 1.248 29 H 0.033 0.967 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.067 0.933 39 H 0.043 0.957 40 H 0.069 0.931 41 H 0.032 0.968 42 H 0.049 0.951 43 H 0.032 0.968 44 H 0.022 0.978 45 H 0.068 0.932 46 H 0.012 0.988 47 H 0.012 0.988 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.752 21.075 11.892 31.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.261 5.261 3 C -0.055 4.055 4 C -0.048 4.048 5 C -0.130 4.130 6 C -0.102 4.102 7 C -0.042 4.042 8 C -0.066 4.066 9 N -0.171 5.171 10 N -0.054 5.054 11 N -0.051 5.051 12 H 0.353 0.647 13 N -0.147 5.147 14 C -0.096 4.096 15 C -0.132 4.132 16 C -0.055 4.055 17 C -0.042 4.042 18 C -0.186 4.186 19 C -0.163 4.163 20 C -0.042 4.042 21 C -0.537 4.537 22 H 0.061 0.939 23 C -0.198 4.198 24 N -0.599 5.599 25 Si 0.766 3.234 26 H -0.196 1.196 27 H -0.218 1.218 28 H -0.171 1.171 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.163 0.837 37 H 0.166 0.834 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.088 0.912 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.051 0.949 44 H 0.041 0.959 45 H 0.087 0.913 46 H 0.030 0.970 47 H 0.031 0.969 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.291 20.881 12.902 31.219 hybrid contribution -0.196 -0.208 -1.350 1.380 sum -19.487 20.674 11.552 30.669 Atomic orbital electron populations 1.22512 0.86523 1.02402 1.01055 1.61786 1.08354 1.12542 1.43431 1.21524 1.02652 0.88507 0.92829 1.20026 0.93856 0.95257 0.95674 1.21106 0.99830 0.99263 0.92751 1.21188 0.96670 0.95589 0.96756 1.17349 0.97203 1.02358 0.87335 1.23890 0.87220 0.98532 0.97004 1.76098 1.25917 1.17598 0.97500 1.78861 0.96395 1.09347 1.20789 1.47788 1.13145 1.35609 1.08606 0.64669 1.74872 1.25262 1.17917 0.96658 1.21235 0.97764 0.98204 0.92446 1.21178 0.97631 0.97934 0.96415 1.22123 0.95844 0.96598 0.90930 1.20287 0.93785 0.94797 0.95346 1.21948 0.98554 0.97417 1.00666 1.21469 0.99120 0.98387 0.97295 1.19624 0.94648 0.94848 0.95102 1.21439 1.04542 1.24627 1.03083 0.93869 1.25952 0.95325 0.96208 1.02322 1.70077 1.18061 1.33234 1.38487 0.85789 0.80355 0.77181 0.80068 1.19577 1.21760 1.17138 0.94802 0.91778 0.90386 0.92338 0.88808 0.85358 0.85115 0.83688 0.83369 0.91403 0.93887 0.91237 0.94867 0.93225 0.94922 0.95901 0.91277 0.96978 0.96936 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.20 127.69 1.18 1.60 16 2 N -0.54 -12.67 3.41 -927.06 -3.17 -15.83 16 3 C 0.07 1.49 4.29 85.56 0.37 1.85 16 4 C -0.05 -0.93 5.15 -19.83 -0.10 -1.03 16 5 C -0.11 -2.45 9.65 22.24 0.21 -2.24 16 6 C -0.08 -1.80 9.70 22.48 0.22 -1.58 16 7 C -0.04 -0.81 5.88 -20.04 -0.12 -0.93 16 8 C 0.21 4.53 7.94 137.38 1.09 5.63 16 9 N -0.30 -7.01 12.23 -52.18 -0.64 -7.64 16 10 N -0.06 -1.09 13.47 37.02 0.50 -0.59 16 11 N -0.20 -2.37 7.90 37.02 0.29 -2.08 16 12 H 0.49 0.63 8.96 -347.54 -3.12 -2.48 16 13 N -0.29 -4.93 12.08 -52.13 -0.63 -5.56 16 14 C -0.08 -1.29 9.70 22.48 0.22 -1.08 16 15 C -0.11 -1.83 8.29 22.24 0.18 -1.65 16 16 C 0.07 2.07 4.23 86.30 0.37 2.43 16 17 C -0.04 -1.51 0.61 -52.18 -0.03 -1.54 16 18 C -0.13 -4.53 6.81 71.98 0.49 -4.04 16 19 C -0.11 -3.98 7.97 71.98 0.57 -3.41 16 20 C 0.00 -0.20 3.11 29.85 0.09 -0.10 16 21 C -0.50 -27.94 8.11 25.60 0.21 -27.74 16 22 H 0.04 2.67 6.00 -2.91 -0.02 2.65 16 23 C 0.00 -0.16 5.47 84.65 0.46 0.30 16 24 N -0.96 -60.50 13.96 21.45 0.30 -60.20 16 25 Si 0.94 44.65 27.47 68.60 1.88 46.53 16 26 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 27 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 28 H -0.25 -10.88 6.54 99.48 0.65 -10.23 16 29 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 1.25 8.06 -2.39 -0.02 1.23 16 31 H 0.08 1.28 6.18 -2.39 -0.01 1.26 16 32 H 0.06 1.03 7.93 -2.39 -0.02 1.01 16 33 H 0.09 2.16 4.21 -2.39 -0.01 2.15 16 34 H 0.13 2.94 6.40 -2.91 -0.02 2.93 16 35 H 0.13 2.88 7.89 -2.91 -0.02 2.85 16 36 H 0.15 1.94 7.88 -2.91 -0.02 1.92 16 37 H 0.15 1.70 7.79 -2.91 -0.02 1.67 16 38 H 0.07 1.92 7.72 -2.38 -0.02 1.90 16 39 H 0.04 1.16 7.79 -2.39 -0.02 1.14 16 40 H 0.07 2.08 4.67 -2.38 -0.01 2.07 16 41 H 0.03 1.40 6.34 -2.39 -0.02 1.39 16 42 H 0.05 1.58 7.54 -2.39 -0.02 1.56 16 43 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.02 0.98 6.79 -2.39 -0.02 0.96 16 45 H 0.07 2.33 7.28 -2.39 -0.02 2.31 16 46 H 0.01 0.55 7.20 -2.39 -0.02 0.53 16 47 H 0.01 0.55 7.57 -2.39 -0.02 0.53 16 48 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -71.53 376.18 1.77 -69.76 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -2.18 Total: 9.15 kcal Atomic # 6 Polarization: -38.93 SS G_CDS: 5.41 Total: -33.52 kcal Atomic # 7 Polarization: -88.57 SS G_CDS: -3.34 Total: -91.92 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.53 kcal Total: -71.53 1.77 -69.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825957607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.028 kcal (2) G-P(sol) polarization free energy of solvation -71.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds