Wall clock time and date at job start Sat Apr 11 2020 02:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47120 * 2 1 4 4 C 1.52997 * 109.47347 * 120.00256 * 2 1 3 5 5 C 1.52994 * 109.47347 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47118 * 299.99694 * 5 4 2 7 7 C 1.50702 * 109.47159 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72352 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 H 1.09007 * 109.47463 * 325.00619 * 10 9 7 12 12 C 1.52995 * 109.47455 * 205.00257 * 10 9 7 13 13 C 1.50702 * 109.47148 * 65.00169 * 12 10 9 14 14 H 1.07995 * 119.99986 * 0.02562 * 13 12 10 15 15 C 1.37882 * 119.99991 * 180.02562 * 13 12 10 16 16 N 1.31511 * 120.00058 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99786 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47361 * 59.99785 * 17 15 13 19 19 H 1.48498 * 109.46760 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46914 * 299.99841 * 17 15 13 21 21 C 1.50697 * 109.46928 * 85.00210 * 10 9 7 22 22 C 1.38241 * 120.00139 * 39.73030 * 21 10 9 23 23 C 1.38232 * 119.99894 * 179.80941 * 22 21 10 24 24 C 1.38237 * 120.00244 * 0.39949 * 23 22 21 25 25 C 1.38233 * 119.99838 * 359.85228 * 24 23 22 26 26 C 1.38235 * 120.00064 * 359.95888 * 25 24 23 27 27 C 1.52996 * 109.47068 * 60.00176 * 6 5 4 28 28 C 1.52996 * 109.47118 * 239.99950 * 2 1 3 29 29 H 1.09001 * 109.47066 * 300.00050 * 1 2 3 30 30 H 1.09004 * 109.47607 * 59.99751 * 1 2 3 31 31 H 1.08994 * 109.47339 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47049 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47131 * 300.00015 * 3 2 1 34 34 H 1.09001 * 109.47192 * 60.00027 * 3 2 1 35 35 H 1.09003 * 109.47498 * 59.99556 * 4 2 1 36 36 H 1.09001 * 109.47245 * 300.00139 * 4 2 1 37 37 H 1.09004 * 109.47131 * 179.97438 * 5 4 2 38 38 H 1.09000 * 109.47504 * 60.00063 * 5 4 2 39 39 H 1.08994 * 109.47405 * 299.99855 * 6 5 4 40 40 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 41 41 H 1.09000 * 109.47218 * 184.99988 * 12 10 9 42 42 H 1.09000 * 109.47293 * 305.00154 * 12 10 9 43 43 H 0.96998 * 119.99898 * 179.97438 * 16 15 13 44 44 H 1.07992 * 119.99770 * 359.97438 * 22 21 10 45 45 H 1.07999 * 119.99804 * 180.23021 * 23 22 21 46 46 H 1.08003 * 120.00220 * 179.83827 * 24 23 22 47 47 H 1.07996 * 120.00002 * 179.97438 * 25 24 23 48 48 H 1.08000 * 119.99532 * 179.97438 * 26 25 24 49 49 H 1.09002 * 109.47575 * 59.99595 * 27 6 5 50 50 H 1.09001 * 109.47551 * 179.97438 * 27 6 5 51 51 H 1.09000 * 109.47665 * 300.00216 * 28 2 1 52 52 H 1.09004 * 109.47066 * 60.00025 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5699 -0.7207 1.2495 6 6 4.0804 -1.4416 0.0003 7 6 5.5875 -1.4405 0.0003 8 8 6.1936 -0.9153 0.9101 9 7 6.2618 -2.0285 -1.0077 10 6 7.7267 -2.0327 -1.0047 11 1 8.0920 -1.1013 -0.5718 12 6 8.2394 -2.1633 -2.4403 13 6 7.8459 -0.9400 -3.2275 14 1 7.2866 -0.1483 -2.7514 15 6 8.2000 -0.8314 -4.5556 16 7 8.8807 -1.7957 -5.1356 17 14 7.7129 0.6854 -5.5312 18 1 8.3082 1.8913 -4.9014 19 1 8.2093 0.5579 -6.9249 20 1 6.2333 0.8123 -5.5428 21 6 8.2240 -3.1961 -0.1860 22 6 7.5829 -4.4185 -0.2614 23 6 8.0415 -5.4867 0.4867 24 6 9.1360 -5.3302 1.3164 25 6 9.7739 -4.1064 1.3957 26 6 9.3177 -3.0393 0.6447 27 6 3.5705 -0.7203 -1.2489 28 6 2.0399 -0.7212 -1.2492 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 -1.7490 1.2492 36 1 1.6767 -0.2075 2.1392 37 1 3.9333 -1.2342 2.1397 38 1 3.9330 0.3071 1.2498 39 1 3.7176 -2.4693 0.0000 40 1 5.7771 -2.4488 -1.7353 41 1 9.3254 -2.2558 -2.4313 42 1 7.8031 -3.0488 -2.9028 43 1 9.1295 -1.7195 -6.0700 44 1 6.7255 -4.5397 -0.9067 45 1 7.5429 -6.4427 0.4250 46 1 9.4927 -6.1641 1.9029 47 1 10.6287 -3.9841 2.0443 48 1 9.8159 -2.0831 0.7071 49 1 3.9334 0.3075 -1.2487 50 1 3.9345 -1.2336 -2.1390 51 1 1.6766 -1.7489 -1.2493 52 1 1.6766 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153663607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:25:19 Heat of formation + Delta-G solvation = -55.513336 kcal Electronic energy + Delta-G solvation = -29104.740019 eV Core-core repulsion = 25453.020014 eV Total energy + Delta-G solvation = -3651.720005 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.210 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.24593 -39.10279 -38.01544 -35.17163 -33.32582 -32.68274 -31.13118 -30.62098 -30.38482 -28.80006 -27.40415 -26.85448 -24.83151 -22.64923 -22.33417 -22.11988 -21.87300 -20.00344 -19.51249 -18.42462 -17.00980 -16.49432 -16.15707 -15.58845 -15.26820 -14.85897 -14.82192 -14.55001 -14.28239 -14.10229 -13.95213 -13.47873 -13.22669 -13.04597 -12.93585 -12.57302 -12.38063 -12.34798 -12.22482 -12.09948 -11.93902 -11.75243 -11.60134 -11.36825 -11.12968 -10.99288 -10.93634 -10.89896 -10.71728 -10.62344 -10.46714 -10.36997 -10.16474 -9.93628 -9.76478 -9.33111 -9.12944 -8.53244 -8.45142 -8.35793 -8.16227 -6.08916 -4.12235 1.79661 1.81585 3.19366 3.27858 3.33279 3.35970 3.79854 4.25652 4.39621 4.57838 4.64984 4.71513 5.02186 5.11422 5.24175 5.27584 5.28532 5.29608 5.35861 5.37843 5.39757 5.50653 5.53342 5.57412 5.59338 5.61075 5.75409 5.84583 5.86439 5.89433 5.92625 5.95553 6.01872 6.08684 6.09934 6.19060 6.24059 6.27373 6.32646 6.37648 6.44243 6.46759 6.58715 6.60352 6.85956 6.86691 6.97020 7.13730 7.41997 7.50029 7.64350 7.87735 8.19620 8.27116 8.84751 8.93380 9.52616 11.01638 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.007624 B = 0.004786 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3671.934650 B = 5849.230860 C = 8781.328290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 C -0.147 4.147 4 C -0.106 4.106 5 C -0.099 4.099 6 C -0.103 4.103 7 C 0.514 3.486 8 O -0.552 6.552 9 N -0.700 5.700 10 C 0.183 3.817 11 H 0.085 0.915 12 C 0.024 3.976 13 C -0.519 4.519 14 H 0.057 0.943 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.069 4.069 22 C -0.108 4.108 23 C -0.125 4.125 24 C -0.136 4.136 25 C -0.123 4.123 26 C -0.109 4.109 27 C -0.115 4.115 28 C -0.105 4.105 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.400 0.600 41 H 0.033 0.967 42 H 0.024 0.976 43 H 0.262 0.738 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.113 0.887 47 H 0.116 0.884 48 H 0.120 0.880 49 H 0.072 0.928 50 H 0.073 0.927 51 H 0.062 0.938 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.459 -2.456 10.671 16.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.067 4.067 3 C -0.204 4.204 4 C -0.144 4.144 5 C -0.137 4.137 6 C -0.125 4.125 7 C 0.299 3.701 8 O -0.430 6.430 9 N -0.349 5.349 10 C 0.079 3.921 11 H 0.103 0.897 12 C -0.013 4.013 13 C -0.557 4.557 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.718 3.282 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.071 4.071 22 C -0.127 4.127 23 C -0.143 4.143 24 C -0.154 4.154 25 C -0.141 4.141 26 C -0.127 4.127 27 C -0.152 4.152 28 C -0.143 4.143 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.234 0.766 41 H 0.051 0.949 42 H 0.042 0.958 43 H 0.072 0.928 44 H 0.134 0.866 45 H 0.132 0.868 46 H 0.131 0.869 47 H 0.134 0.866 48 H 0.138 0.862 49 H 0.090 0.910 50 H 0.092 0.908 51 H 0.081 0.919 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.930 -2.126 11.127 16.452 hybrid contribution -0.347 0.509 -1.079 1.242 sum -12.277 -1.617 10.049 15.947 Atomic orbital electron populations 1.21859 0.94918 1.01492 1.01489 1.20557 0.94860 0.95764 0.95502 1.21991 1.02031 0.95125 1.01241 1.21608 0.95578 1.00166 0.97044 1.21353 0.94321 1.01556 0.96448 1.21306 0.92215 1.01437 0.97508 1.20560 0.89604 0.77924 0.81982 1.90642 1.70424 1.45751 1.36198 1.45996 1.07416 1.57165 1.24289 1.20222 0.78866 0.94689 0.98322 0.89665 1.19378 0.97269 0.97854 0.86793 1.21085 1.35648 1.03865 0.95113 0.92454 1.24975 0.95047 0.96197 0.97827 1.69947 1.38419 1.32420 1.12305 0.86680 0.78897 0.83544 0.79040 1.20235 1.21327 1.20217 1.20566 0.95013 0.95859 0.95616 1.20903 0.99980 0.92560 0.99212 1.21037 0.97292 0.98422 0.97578 1.20989 0.97019 0.97279 1.00101 1.21039 0.99904 0.93328 0.99822 1.21022 0.96764 0.98873 0.96080 1.21596 0.95508 1.01645 0.96489 1.21592 0.95175 1.00356 0.97137 0.92897 0.92799 0.92826 0.91628 0.92914 0.93013 0.92118 0.92005 0.91596 0.90935 0.89214 0.76574 0.94889 0.95799 0.92833 0.86608 0.86772 0.86869 0.86639 0.86236 0.90965 0.90836 0.91905 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.47 37.15 0.31 -0.85 16 2 C -0.07 -0.65 0.77 -154.51 -0.12 -0.77 16 3 C -0.15 -1.51 7.78 37.16 0.29 -1.23 16 4 C -0.11 -1.07 4.73 -26.74 -0.13 -1.20 16 5 C -0.10 -1.25 4.22 -26.74 -0.11 -1.36 16 6 C -0.10 -1.37 2.53 -91.77 -0.23 -1.60 16 7 C 0.51 8.98 7.11 -10.98 -0.08 8.90 16 8 O -0.55 -11.57 15.65 5.55 0.09 -11.48 16 9 N -0.70 -12.51 3.92 -54.93 -0.22 -12.73 16 10 C 0.18 3.74 2.12 -69.09 -0.15 3.60 16 11 H 0.09 1.92 7.44 -51.93 -0.39 1.54 16 12 C 0.02 0.58 4.50 -27.88 -0.13 0.46 16 13 C -0.52 -13.61 8.84 -34.44 -0.30 -13.91 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 17 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 C -0.07 -1.30 4.91 -104.62 -0.51 -1.81 16 22 C -0.11 -1.83 9.33 -39.58 -0.37 -2.20 16 23 C -0.13 -1.88 10.05 -39.58 -0.40 -2.27 16 24 C -0.14 -1.96 10.05 -39.58 -0.40 -2.36 16 25 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 26 C -0.11 -1.93 9.67 -39.58 -0.38 -2.31 16 27 C -0.11 -1.44 4.83 -26.70 -0.13 -1.57 16 28 C -0.11 -1.09 4.73 -26.70 -0.13 -1.21 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.78 4.81 -51.93 -0.25 0.53 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 38 H 0.07 1.01 6.39 -51.93 -0.33 0.68 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.40 6.60 8.03 -40.82 -0.33 6.27 16 41 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.12 1.83 7.71 -52.49 -0.40 1.43 16 45 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 46 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 47 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 48 H 0.12 2.04 8.04 -52.49 -0.42 1.62 16 49 H 0.07 1.01 6.43 -51.93 -0.33 0.68 16 50 H 0.07 0.96 7.57 -51.93 -0.39 0.57 16 51 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 52 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 406.26 15.07 6.12 6.12 Total: -1.00 -30.15 406.26 -10.89 -41.04 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -9.15 Total: 8.31 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -3.45 Total: -22.43 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.52 Total: -37.47 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.15 -10.89 -41.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153663607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.473 kcal (2) G-P(sol) polarization free energy of solvation -30.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds