Wall clock time and date at job start Sat Apr 11 2020 02:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47120 * 2 1 4 4 C 1.52997 * 109.47347 * 120.00256 * 2 1 3 5 5 C 1.52994 * 109.47347 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47118 * 299.99694 * 5 4 2 7 7 C 1.50702 * 109.47159 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72352 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 H 1.09007 * 109.47463 * 325.00619 * 10 9 7 12 12 C 1.52995 * 109.47455 * 205.00257 * 10 9 7 13 13 C 1.50702 * 109.47148 * 65.00169 * 12 10 9 14 14 H 1.07995 * 119.99986 * 0.02562 * 13 12 10 15 15 C 1.37882 * 119.99991 * 180.02562 * 13 12 10 16 16 N 1.31511 * 120.00058 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99786 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47361 * 59.99785 * 17 15 13 19 19 H 1.48498 * 109.46760 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46914 * 299.99841 * 17 15 13 21 21 C 1.50697 * 109.46928 * 85.00210 * 10 9 7 22 22 C 1.38241 * 120.00139 * 39.73030 * 21 10 9 23 23 C 1.38232 * 119.99894 * 179.80941 * 22 21 10 24 24 C 1.38237 * 120.00244 * 0.39949 * 23 22 21 25 25 C 1.38233 * 119.99838 * 359.85228 * 24 23 22 26 26 C 1.38235 * 120.00064 * 359.95888 * 25 24 23 27 27 C 1.52996 * 109.47068 * 60.00176 * 6 5 4 28 28 C 1.52996 * 109.47118 * 239.99950 * 2 1 3 29 29 H 1.09001 * 109.47066 * 300.00050 * 1 2 3 30 30 H 1.09004 * 109.47607 * 59.99751 * 1 2 3 31 31 H 1.08994 * 109.47339 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47049 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47131 * 300.00015 * 3 2 1 34 34 H 1.09001 * 109.47192 * 60.00027 * 3 2 1 35 35 H 1.09003 * 109.47498 * 59.99556 * 4 2 1 36 36 H 1.09001 * 109.47245 * 300.00139 * 4 2 1 37 37 H 1.09004 * 109.47131 * 179.97438 * 5 4 2 38 38 H 1.09000 * 109.47504 * 60.00063 * 5 4 2 39 39 H 1.08994 * 109.47405 * 299.99855 * 6 5 4 40 40 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 41 41 H 1.09000 * 109.47218 * 184.99988 * 12 10 9 42 42 H 1.09000 * 109.47293 * 305.00154 * 12 10 9 43 43 H 0.96998 * 119.99898 * 179.97438 * 16 15 13 44 44 H 1.07992 * 119.99770 * 359.97438 * 22 21 10 45 45 H 1.07999 * 119.99804 * 180.23021 * 23 22 21 46 46 H 1.08003 * 120.00220 * 179.83827 * 24 23 22 47 47 H 1.07996 * 120.00002 * 179.97438 * 25 24 23 48 48 H 1.08000 * 119.99532 * 179.97438 * 26 25 24 49 49 H 1.09002 * 109.47575 * 59.99595 * 27 6 5 50 50 H 1.09001 * 109.47551 * 179.97438 * 27 6 5 51 51 H 1.09000 * 109.47665 * 300.00216 * 28 2 1 52 52 H 1.09004 * 109.47066 * 60.00025 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5699 -0.7207 1.2495 6 6 4.0804 -1.4416 0.0003 7 6 5.5875 -1.4405 0.0003 8 8 6.1936 -0.9153 0.9101 9 7 6.2618 -2.0285 -1.0077 10 6 7.7267 -2.0327 -1.0047 11 1 8.0920 -1.1013 -0.5718 12 6 8.2394 -2.1633 -2.4403 13 6 7.8459 -0.9400 -3.2275 14 1 7.2866 -0.1483 -2.7514 15 6 8.2000 -0.8314 -4.5556 16 7 8.8807 -1.7957 -5.1356 17 14 7.7129 0.6854 -5.5312 18 1 8.3082 1.8913 -4.9014 19 1 8.2093 0.5579 -6.9249 20 1 6.2333 0.8123 -5.5428 21 6 8.2240 -3.1961 -0.1860 22 6 7.5829 -4.4185 -0.2614 23 6 8.0415 -5.4867 0.4867 24 6 9.1360 -5.3302 1.3164 25 6 9.7739 -4.1064 1.3957 26 6 9.3177 -3.0393 0.6447 27 6 3.5705 -0.7203 -1.2489 28 6 2.0399 -0.7212 -1.2492 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 -1.7490 1.2492 36 1 1.6767 -0.2075 2.1392 37 1 3.9333 -1.2342 2.1397 38 1 3.9330 0.3071 1.2498 39 1 3.7176 -2.4693 0.0000 40 1 5.7771 -2.4488 -1.7353 41 1 9.3254 -2.2558 -2.4313 42 1 7.8031 -3.0488 -2.9028 43 1 9.1295 -1.7195 -6.0700 44 1 6.7255 -4.5397 -0.9067 45 1 7.5429 -6.4427 0.4250 46 1 9.4927 -6.1641 1.9029 47 1 10.6287 -3.9841 2.0443 48 1 9.8159 -2.0831 0.7071 49 1 3.9334 0.3075 -1.2487 50 1 3.9345 -1.2336 -2.1390 51 1 1.6766 -1.7489 -1.2493 52 1 1.6766 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153663607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:25:19 Heat of formation + Delta-G solvation = -69.522984 kcal Electronic energy + Delta-G solvation = -29105.347522 eV Core-core repulsion = 25453.020014 eV Total energy + Delta-G solvation = -3652.327509 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.49188 -40.29858 -39.25039 -36.79292 -34.76111 -34.30863 -32.42651 -31.74171 -31.55077 -30.54275 -28.16596 -27.91459 -26.52913 -23.82768 -23.61213 -23.50155 -23.08976 -21.41235 -20.89365 -19.30582 -18.69125 -18.03690 -17.66071 -17.03435 -16.49785 -16.37078 -16.07302 -15.70579 -15.56006 -15.28433 -14.88630 -14.82594 -14.51590 -14.22220 -14.17322 -14.10543 -13.69015 -13.62302 -13.44765 -13.35438 -13.13324 -12.91713 -12.77918 -12.67035 -12.52992 -12.45740 -12.29835 -12.15020 -11.88588 -11.86031 -11.84137 -11.59606 -11.34996 -11.32201 -11.08068 -10.83306 -10.65771 -10.49670 -9.94029 -9.76321 -9.52272 -8.20705 -6.30762 0.50609 0.54935 1.38701 1.40370 1.48185 1.77332 2.38842 2.39432 2.97116 3.13558 3.66804 3.71491 3.78243 3.98408 4.02483 4.10651 4.16063 4.19735 4.22894 4.31452 4.41795 4.45829 4.48702 4.58415 4.61752 4.65169 4.72699 4.76459 4.78176 4.88038 4.95146 4.98579 5.09140 5.11922 5.12527 5.16340 5.18228 5.19314 5.24349 5.28867 5.30068 5.38584 5.42700 5.52911 5.55768 5.60381 5.61434 5.63389 5.67936 5.77135 5.91654 6.15428 6.19957 6.74644 6.81235 7.37592 7.41018 8.89897 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.007624 B = 0.004786 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3671.934650 B = 5849.230860 C = 8781.328290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.065 4.065 3 C -0.147 4.147 4 C -0.099 4.099 5 C -0.095 4.095 6 C -0.092 4.092 7 C 0.509 3.491 8 O -0.591 6.591 9 N -0.695 5.695 10 C 0.199 3.801 11 H 0.053 0.947 12 C 0.039 3.961 13 C -0.528 4.528 14 H 0.052 0.948 15 C 0.014 3.986 16 N -0.925 5.925 17 Si 0.953 3.047 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.264 1.264 21 C -0.097 4.097 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.130 4.130 25 C -0.124 4.124 26 C -0.136 4.136 27 C -0.112 4.112 28 C -0.100 4.100 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.042 0.958 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.115 0.885 40 H 0.407 0.593 41 H 0.001 0.999 42 H 0.012 0.988 43 H 0.264 0.736 44 H 0.121 0.879 45 H 0.148 0.852 46 H 0.152 0.848 47 H 0.143 0.857 48 H 0.110 0.890 49 H 0.051 0.949 50 H 0.067 0.933 51 H 0.079 0.921 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.728 -3.831 11.343 18.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.065 4.065 3 C -0.204 4.204 4 C -0.137 4.137 5 C -0.133 4.133 6 C -0.113 4.113 7 C 0.297 3.703 8 O -0.472 6.472 9 N -0.344 5.344 10 C 0.094 3.906 11 H 0.071 0.929 12 C 0.002 3.998 13 C -0.566 4.566 14 H 0.070 0.930 15 C -0.185 4.185 16 N -0.565 5.565 17 Si 0.778 3.222 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.188 1.188 21 C -0.098 4.098 22 C -0.140 4.140 23 C -0.141 4.141 24 C -0.147 4.147 25 C -0.142 4.142 26 C -0.154 4.154 27 C -0.150 4.150 28 C -0.137 4.137 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.133 0.867 40 H 0.242 0.758 41 H 0.019 0.981 42 H 0.031 0.969 43 H 0.073 0.927 44 H 0.139 0.861 45 H 0.166 0.834 46 H 0.170 0.830 47 H 0.161 0.839 48 H 0.128 0.872 49 H 0.070 0.930 50 H 0.085 0.915 51 H 0.098 0.902 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.222 -3.505 11.795 18.806 hybrid contribution 0.452 0.912 -1.232 1.598 sum -13.770 -2.594 10.563 17.547 Atomic orbital electron populations 1.21811 0.93179 1.02324 1.02000 1.20559 0.96131 0.94915 0.94925 1.21989 1.00586 0.96094 1.01766 1.21577 0.93038 1.01341 0.97696 1.21313 0.96518 1.00004 0.95487 1.21322 0.88569 1.03091 0.98360 1.21365 0.91419 0.76584 0.80887 1.90618 1.71667 1.47293 1.37631 1.45908 1.06376 1.57309 1.24846 1.19691 0.80380 0.94468 0.96078 0.92903 1.19115 0.95161 0.96567 0.88984 1.21326 1.35328 1.04337 0.95560 0.92990 1.25742 0.94959 0.98971 0.98857 1.70060 1.39517 1.34281 1.12660 0.85692 0.79193 0.79780 0.77551 1.20275 1.20807 1.18839 1.20454 0.96433 0.96000 0.96900 1.21071 1.00327 0.92525 1.00036 1.21449 0.97295 0.98962 0.96420 1.21473 0.96065 0.97792 0.99401 1.21382 1.00566 0.92955 0.99267 1.21172 0.97130 0.99755 0.97373 1.21569 0.97597 1.00154 0.95658 1.21584 0.92839 1.01579 0.97744 0.92274 0.92495 0.91822 0.93872 0.92610 0.92291 0.90551 0.91047 0.92657 0.92983 0.86737 0.75754 0.98097 0.96948 0.92719 0.86058 0.83446 0.83038 0.83917 0.87226 0.92992 0.91459 0.90235 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.47 71.98 0.61 -1.22 16 2 C -0.07 -1.13 0.77 -52.19 -0.04 -1.17 16 3 C -0.15 -2.92 7.78 71.98 0.56 -2.36 16 4 C -0.10 -1.78 4.73 30.59 0.14 -1.63 16 5 C -0.10 -2.38 4.22 30.59 0.13 -2.26 16 6 C -0.09 -2.43 2.53 -11.54 -0.03 -2.46 16 7 C 0.51 18.49 7.11 87.66 0.62 19.11 16 8 O -0.59 -26.15 15.65 -3.04 -0.05 -26.20 16 9 N -0.70 -26.00 3.92 -446.10 -1.75 -27.75 16 10 C 0.20 8.68 2.12 44.24 0.09 8.77 16 11 H 0.05 2.61 7.44 -2.38 -0.02 2.59 16 12 C 0.04 1.99 4.50 29.85 0.13 2.12 16 13 C -0.53 -28.78 8.84 25.60 0.23 -28.56 16 14 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 15 C 0.01 0.75 5.46 84.66 0.46 1.21 16 16 N -0.93 -54.13 13.29 21.45 0.28 -53.84 16 17 Si 0.95 43.45 29.54 68.60 2.03 45.48 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 21 C -0.10 -3.78 4.91 -19.86 -0.10 -3.88 16 22 C -0.12 -4.09 9.33 22.27 0.21 -3.88 16 23 C -0.12 -3.41 10.05 22.27 0.22 -3.18 16 24 C -0.13 -3.36 10.05 22.27 0.22 -3.14 16 25 C -0.12 -3.65 10.05 22.27 0.22 -3.42 16 26 C -0.14 -4.99 9.67 22.27 0.22 -4.78 16 27 C -0.11 -2.78 4.83 30.61 0.15 -2.63 16 28 C -0.10 -1.86 4.73 30.61 0.14 -1.71 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.04 1.05 4.81 -2.39 -0.01 1.03 16 33 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.05 1.49 8.10 -2.38 -0.02 1.47 16 38 H 0.05 1.51 6.39 -2.39 -0.02 1.49 16 39 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.41 13.86 8.03 -92.71 -0.74 13.12 16 41 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 42 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 44 H 0.12 3.81 7.71 -2.91 -0.02 3.79 16 45 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 46 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 47 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 48 H 0.11 4.07 8.04 -2.91 -0.02 4.05 16 49 H 0.05 1.50 6.43 -2.39 -0.02 1.48 16 50 H 0.07 1.74 7.57 -2.39 -0.02 1.72 16 51 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 52 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -68.10 406.26 4.86 -63.24 By element: Atomic # 1 Polarization: 33.99 SS G_CDS: 0.14 Total: 34.13 kcal Atomic # 6 Polarization: -39.26 SS G_CDS: 4.20 Total: -35.06 kcal Atomic # 7 Polarization: -80.13 SS G_CDS: -1.46 Total: -81.59 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.05 Total: -26.20 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -68.10 4.86 -63.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153663607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.284 kcal (2) G-P(sol) polarization free energy of solvation -68.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds