Wall clock time and date at job start Sat Apr 11 2020 02:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47391 * 2 1 4 4 N 1.46499 * 109.47015 * 120.00236 * 2 1 3 5 5 C 1.34777 * 120.00085 * 302.44976 * 4 2 1 6 6 O 1.21287 * 119.99553 * 5.27386 * 5 4 2 7 7 C 1.50690 * 120.00441 * 185.27324 * 5 4 2 8 8 C 1.52992 * 109.47555 * 186.23091 * 7 5 4 9 9 H 1.09000 * 109.47106 * 53.75026 * 8 7 5 10 10 C 1.50704 * 109.47161 * 293.75076 * 8 7 5 11 11 H 1.08004 * 119.99716 * 325.35291 * 10 8 7 12 12 C 1.37874 * 120.00320 * 145.36001 * 10 8 7 13 13 N 1.31512 * 120.00245 * 174.44090 * 12 10 8 14 14 Si 1.86806 * 119.99733 * 354.44020 * 12 10 8 15 15 H 1.48501 * 109.47177 * 94.02788 * 14 12 10 16 16 H 1.48499 * 109.46965 * 214.02404 * 14 12 10 17 17 H 1.48504 * 109.47222 * 334.02534 * 14 12 10 18 18 C 1.50705 * 109.47638 * 173.75010 * 8 7 5 19 19 C 1.38231 * 119.99837 * 64.67421 * 18 8 7 20 20 C 1.38234 * 119.99612 * 179.79067 * 19 18 8 21 21 C 1.38237 * 120.00272 * 0.44856 * 20 19 18 22 22 C 1.38228 * 119.99731 * 359.80942 * 21 20 19 23 23 C 1.38234 * 120.00111 * 359.97438 * 22 21 20 24 24 C 1.46500 * 120.00086 * 122.45581 * 4 2 1 25 25 C 1.54273 * 110.02754 * 241.40740 * 24 4 2 26 26 C 1.54967 * 104.15583 * 217.13274 * 25 24 4 27 27 C 1.54889 * 102.77616 * 37.88940 * 26 25 24 28 28 C 1.53869 * 110.03416 * 124.18852 * 24 4 2 29 29 H 1.08995 * 109.47228 * 306.05414 * 1 2 3 30 30 H 1.09001 * 109.46976 * 66.04952 * 1 2 3 31 31 H 1.08994 * 109.47379 * 186.04723 * 1 2 3 32 32 H 1.09002 * 109.46776 * 239.99968 * 2 1 3 33 33 H 1.08993 * 109.47552 * 184.85325 * 3 2 1 34 34 H 1.09005 * 109.46977 * 304.85453 * 3 2 1 35 35 H 1.08999 * 109.46998 * 64.84908 * 3 2 1 36 36 H 1.09006 * 109.47402 * 66.22720 * 7 5 4 37 37 H 1.09006 * 109.47193 * 306.23639 * 7 5 4 38 38 H 0.96996 * 120.00000 * 180.02562 * 13 12 10 39 39 H 1.07998 * 120.00279 * 0.02562 * 19 18 8 40 40 H 1.08007 * 120.00094 * 180.28125 * 20 19 18 41 41 H 1.07995 * 119.99856 * 179.83393 * 21 20 19 42 42 H 1.08008 * 119.99999 * 180.02562 * 22 21 20 43 43 H 1.08003 * 120.00064 * 180.02562 * 23 22 21 44 44 H 1.08998 * 110.01673 * 2.79594 * 24 4 2 45 45 H 1.08997 * 110.48571 * 335.78526 * 25 24 4 46 46 H 1.09003 * 110.48301 * 98.42965 * 25 24 4 47 47 H 1.08995 * 110.72278 * 279.57662 * 26 25 24 48 48 H 1.09001 * 110.92028 * 156.29519 * 26 25 24 49 49 H 1.09004 * 110.48244 * 203.39970 * 27 26 25 50 50 H 1.09004 * 110.59375 * 80.81576 * 27 26 25 51 51 H 1.09001 * 110.03289 * 238.56490 * 28 24 4 52 52 H 1.09003 * 110.03054 * 359.95414 * 28 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.6524 -0.2598 2.4197 6 8 0.8445 0.6381 2.5298 7 6 2.2471 -0.8935 3.6507 8 6 1.5560 -0.3353 4.8963 9 1 0.4774 -0.4601 4.8000 10 6 1.8816 1.1293 5.0376 11 1 2.8527 1.4976 4.7414 12 6 0.9399 1.9991 5.5452 13 7 1.2586 3.2549 5.7710 14 14 -0.7889 1.3937 5.9121 15 1 -0.8797 0.9903 7.3384 16 1 -1.7621 2.4824 5.6427 17 1 -1.0989 0.2272 5.0470 18 6 2.0407 -1.0775 6.1151 19 6 3.3655 -0.9854 6.4989 20 6 3.8091 -1.6627 7.6193 21 6 2.9301 -2.4395 8.3505 22 6 1.6065 -2.5359 7.9636 23 6 1.1619 -1.8550 6.8458 24 6 2.9044 -1.8496 1.0624 25 6 2.2362 -3.0988 1.6732 26 6 3.4061 -3.8678 2.3376 27 6 4.2800 -2.7278 2.9170 28 6 4.2035 -1.6139 1.8525 29 1 -0.3633 0.6048 0.8308 30 1 -0.3633 0.4172 -0.9392 31 1 -0.3634 -1.0219 0.1083 32 1 1.8933 -0.5139 -0.8900 33 1 3.1265 1.4437 -0.0869 34 1 1.6074 1.9808 -0.8434 35 1 1.7494 1.9306 0.9302 36 1 3.3130 -0.6700 3.6957 37 1 2.1039 -1.9733 3.6088 38 1 0.5962 3.8666 6.1284 39 1 4.0530 -0.3812 5.9256 40 1 4.8432 -1.5871 7.9218 41 1 3.2773 -2.9708 9.2243 42 1 0.9196 -3.1425 8.5352 43 1 0.1277 -1.9300 6.5437 44 1 3.1333 -2.0249 0.0112 45 1 1.4971 -2.8094 2.4201 46 1 1.7748 -3.7045 0.8931 47 1 3.9616 -4.4411 1.5954 48 1 3.0424 -4.5182 3.1331 49 1 5.3092 -3.0635 3.0448 50 1 3.8734 -2.3775 3.8658 51 1 5.0630 -1.6757 1.1850 52 1 4.1750 -0.6368 2.3349 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000475657921.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:25:49 Heat of formation + Delta-G solvation = -3.977234 kcal Electronic energy + Delta-G solvation = -30770.484762 eV Core-core repulsion = 27120.999531 eV Total energy + Delta-G solvation = -3649.485232 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.210 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.45049 -38.51667 -37.37599 -35.47775 -33.73856 -31.74241 -31.44609 -30.19980 -29.05550 -28.58463 -27.11670 -26.81653 -25.83834 -22.95488 -22.01431 -21.61812 -20.69233 -20.39587 -19.42379 -18.22849 -16.93900 -16.27814 -16.21082 -15.82793 -14.87526 -14.79514 -14.64176 -14.26765 -14.13243 -13.77152 -13.69093 -13.51747 -12.97665 -12.75797 -12.68959 -12.53240 -12.39967 -12.22306 -12.02577 -11.85009 -11.72766 -11.45705 -11.24799 -11.08819 -11.03447 -10.88884 -10.82995 -10.81069 -10.68634 -10.55513 -10.44530 -10.41134 -10.23755 -9.63447 -9.51070 -8.92904 -8.60940 -8.37709 -8.21525 -8.12340 -7.78993 -5.93986 -3.89105 2.10007 2.16322 3.40785 3.44229 3.48898 3.50950 3.52098 4.54082 4.59997 4.61074 4.69428 4.84170 5.10332 5.31843 5.35944 5.41245 5.47415 5.52111 5.52600 5.54202 5.57157 5.60840 5.69486 5.70303 5.75564 5.86815 5.87326 5.92945 5.94361 6.01576 6.08388 6.09164 6.14835 6.18239 6.23363 6.24252 6.27318 6.35825 6.38215 6.46618 6.65924 6.68804 6.70137 6.76089 6.85636 7.07029 7.15029 7.19843 7.29448 7.61348 7.74884 7.86638 8.03759 8.57951 9.04973 9.11126 9.71525 11.19288 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.009805 B = 0.006494 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.967836 B = 4310.495129 C = 6150.071209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.150 3.850 3 C -0.168 4.168 4 N -0.623 5.623 5 C 0.519 3.481 6 O -0.492 6.492 7 C -0.134 4.134 8 C 0.041 3.959 9 H 0.055 0.945 10 C -0.476 4.476 11 H 0.070 0.930 12 C 0.085 3.915 13 N -0.901 5.901 14 Si 0.871 3.129 15 H -0.283 1.283 16 H -0.292 1.292 17 H -0.259 1.259 18 C -0.036 4.036 19 C -0.101 4.101 20 C -0.125 4.125 21 C -0.150 4.150 22 C -0.124 4.124 23 C -0.141 4.141 24 C 0.146 3.854 25 C -0.145 4.145 26 C -0.121 4.121 27 C -0.138 4.138 28 C -0.145 4.145 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.260 0.740 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.065 0.935 47 H 0.064 0.936 48 H 0.067 0.933 49 H 0.062 0.938 50 H 0.086 0.914 51 H 0.065 0.935 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.844 -14.405 -8.637 17.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.047 3.953 3 C -0.226 4.226 4 N -0.360 5.360 5 C 0.308 3.692 6 O -0.364 6.364 7 C -0.173 4.173 8 C 0.022 3.978 9 H 0.073 0.927 10 C -0.513 4.513 11 H 0.088 0.912 12 C -0.116 4.116 13 N -0.539 5.539 14 Si 0.700 3.300 15 H -0.209 1.209 16 H -0.218 1.218 17 H -0.184 1.184 18 C -0.036 4.036 19 C -0.119 4.119 20 C -0.143 4.143 21 C -0.168 4.168 22 C -0.142 4.142 23 C -0.159 4.159 24 C 0.041 3.959 25 C -0.184 4.184 26 C -0.159 4.159 27 C -0.175 4.175 28 C -0.183 4.183 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.137 0.863 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.083 0.917 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.081 0.919 50 H 0.105 0.895 51 H 0.084 0.916 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.304 -13.677 -8.513 16.676 hybrid contribution -0.868 -0.144 0.227 0.908 sum 3.437 -13.821 -8.287 16.478 Atomic orbital electron populations 1.22254 0.95302 1.02197 1.02957 1.20866 0.94416 0.93144 0.86918 1.22181 1.00342 0.96336 1.03729 1.48424 1.50403 1.31237 1.05942 1.20726 0.81696 0.83047 0.83766 1.90671 1.31648 1.28416 1.85619 1.22517 1.01787 0.99383 0.93647 1.18399 0.97093 0.95751 0.86568 0.92671 1.20556 1.01180 0.88351 1.41260 0.91235 1.24855 0.97964 0.94591 0.94218 1.69891 1.34500 1.04327 1.45158 0.86896 0.86035 0.78978 0.78081 1.20890 1.21841 1.18397 1.20783 0.92946 0.91583 0.98328 1.20949 0.96111 0.98235 0.96628 1.21055 0.98937 0.98194 0.96148 1.20844 0.94012 1.01617 1.00355 1.20948 0.95671 1.00317 0.97238 1.21064 0.99358 0.98768 0.96731 1.21653 0.89368 0.85207 0.99670 1.23046 0.98624 0.96152 1.00535 1.22435 0.96350 0.97394 0.99702 1.22715 0.99875 0.95217 0.99696 1.22790 0.96780 1.00696 0.98076 0.89524 0.92879 0.93294 0.90986 0.93202 0.92541 0.89988 0.88797 0.90313 0.92987 0.86341 0.87235 0.87473 0.87424 0.87441 0.89790 0.89985 0.91655 0.91736 0.91424 0.91918 0.89520 0.91638 0.89846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 8.95 37.16 0.33 -2.15 16 2 C 0.15 2.10 3.29 -67.93 -0.22 1.88 16 3 C -0.17 -2.53 9.22 37.16 0.34 -2.19 16 4 N -0.62 -9.44 2.39 -157.33 -0.38 -9.82 16 5 C 0.52 10.05 5.86 -10.99 -0.06 9.99 16 6 O -0.49 -11.65 11.24 5.55 0.06 -11.59 16 7 C -0.13 -2.48 1.95 -27.89 -0.05 -2.54 16 8 C 0.04 0.93 1.29 -92.92 -0.12 0.81 16 9 H 0.06 1.36 4.42 -51.93 -0.23 1.13 16 10 C -0.48 -12.97 6.80 -34.44 -0.23 -13.21 16 11 H 0.07 2.06 8.06 -52.48 -0.42 1.63 16 12 C 0.09 2.51 5.47 -17.82 -0.10 2.42 16 13 N -0.90 -28.16 13.96 55.43 0.77 -27.38 16 14 Si 0.87 23.00 27.64 -169.99 -4.70 18.30 16 15 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 16 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 17 H -0.26 -6.59 5.92 56.52 0.33 -6.26 16 18 C -0.04 -0.74 4.77 -104.62 -0.50 -1.24 16 19 C -0.10 -1.94 8.89 -39.59 -0.35 -2.29 16 20 C -0.13 -2.11 10.05 -39.58 -0.40 -2.50 16 21 C -0.15 -2.41 10.05 -39.59 -0.40 -2.81 16 22 C -0.12 -2.10 10.05 -39.59 -0.40 -2.49 16 23 C -0.14 -2.74 9.67 -39.58 -0.38 -3.12 16 24 C 0.15 1.73 3.37 -66.81 -0.23 1.51 16 25 C -0.15 -1.64 5.85 -25.03 -0.15 -1.79 16 26 C -0.12 -1.21 6.76 -24.70 -0.17 -1.38 16 27 C -0.14 -1.54 5.98 -25.07 -0.15 -1.69 16 28 C -0.15 -1.71 5.64 -25.62 -0.14 -1.86 16 29 H 0.09 1.59 6.07 -51.93 -0.32 1.28 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.82 7.57 -51.93 -0.39 0.42 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.08 1.59 6.42 -51.93 -0.33 1.25 16 36 H 0.09 1.68 4.39 -51.93 -0.23 1.45 16 37 H 0.08 1.28 3.65 -51.93 -0.19 1.09 16 38 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 39 H 0.12 2.27 7.82 -52.49 -0.41 1.86 16 40 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 41 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 43 H 0.11 2.03 7.95 -52.48 -0.42 1.61 16 44 H 0.08 0.84 7.59 -51.93 -0.39 0.44 16 45 H 0.08 1.11 5.36 -51.93 -0.28 0.83 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 49 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.09 1.14 5.25 -51.93 -0.27 0.87 16 51 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 52 H 0.08 1.20 5.50 -51.93 -0.29 0.91 16 LS Contribution 385.08 15.07 5.80 5.80 Total: -1.00 -32.08 385.08 -10.26 -42.34 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -8.45 Total: 6.99 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: -3.38 Total: -24.65 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.40 Total: -37.20 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.06 Total: -11.59 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.70 Total: 18.30 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.08 -10.26 -42.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000475657921.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.366 kcal (2) G-P(sol) polarization free energy of solvation -32.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds