Wall clock time and date at job start Sat Apr 11 2020 02:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86790 * 119.99978 * 2 1 4 4 H 1.48505 * 109.47443 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47096 * 299.99878 * 3 2 1 6 6 H 1.48504 * 109.47391 * 59.99654 * 3 2 1 7 7 C 1.38810 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00258 * 163.07340 * 7 2 1 9 9 N 1.36939 * 120.00358 * 343.07041 * 7 2 1 10 10 C 1.46930 * 120.62536 * 331.82792 * 9 7 2 11 11 C 1.53197 * 108.77440 * 233.62667 * 10 9 7 12 12 C 1.53045 * 109.31179 * 305.36946 * 11 10 9 13 13 N 1.46901 * 109.46044 * 181.38689 * 12 11 10 14 14 C 1.46894 * 111.00236 * 154.97246 * 13 12 11 15 15 C 1.53125 * 109.52415 * 154.99986 * 14 13 12 16 16 C 1.53038 * 109.27612 * 177.62014 * 15 14 13 17 17 N 1.46847 * 109.52513 * 300.82003 * 16 15 14 18 18 C 1.39675 * 110.99943 * 185.84193 * 17 16 15 19 19 C 1.38913 * 120.07214 * 179.97438 * 18 17 16 20 20 C 1.38107 * 119.92078 * 179.97438 * 19 18 17 21 21 C 1.38279 * 120.07459 * 0.27719 * 20 19 18 22 22 C 1.38284 * 120.15312 * 359.44987 * 21 20 19 23 23 C 1.38107 * 120.07365 * 0.54781 * 22 21 20 24 24 C 1.46845 * 111.19766 * 61.73964 * 17 16 15 25 25 C 1.53027 * 109.52563 * 298.25936 * 24 17 16 26 26 C 1.53039 * 109.53084 * 61.36977 * 12 11 10 27 27 C 1.46922 * 120.63342 * 151.84608 * 9 7 2 28 28 H 0.96993 * 120.00285 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.58932 * 113.84678 * 10 9 7 30 30 H 1.08991 * 109.59053 * 353.41562 * 10 9 7 31 31 H 1.08992 * 109.50058 * 185.41541 * 11 10 9 32 32 H 1.09004 * 109.49662 * 65.31619 * 11 10 9 33 33 H 1.09005 * 109.45469 * 301.35504 * 12 11 10 34 34 H 1.00905 * 110.99781 * 278.92877 * 13 12 11 35 35 H 1.08989 * 109.52384 * 34.86804 * 14 13 12 36 36 H 1.08999 * 109.50112 * 57.68040 * 15 14 13 37 37 H 1.08998 * 109.49813 * 297.55898 * 15 14 13 38 38 H 1.09002 * 109.45777 * 180.80233 * 16 15 14 39 39 H 1.09002 * 109.45286 * 60.83399 * 16 15 14 40 40 H 1.08000 * 120.03616 * 0.02562 * 19 18 17 41 41 H 1.08004 * 119.95841 * 179.97438 * 20 19 18 42 42 H 1.08005 * 119.92495 * 179.70044 * 21 20 19 43 43 H 1.08003 * 119.96414 * 180.25746 * 22 21 20 44 44 H 1.07998 * 120.04283 * 179.70599 * 23 22 21 45 45 H 1.08999 * 109.45933 * 58.28063 * 24 17 16 46 46 H 1.09005 * 109.46085 * 178.24110 * 24 17 16 47 47 H 1.08997 * 109.50544 * 299.23747 * 25 24 17 48 48 H 1.09000 * 109.50303 * 179.11874 * 25 24 17 49 49 H 1.09000 * 109.49624 * 58.57833 * 26 12 11 50 50 H 1.08993 * 109.49777 * 178.67719 * 26 12 11 51 51 H 1.09004 * 109.59003 * 246.15803 * 27 9 7 52 52 H 1.08994 * 109.58726 * 6.44048 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3963 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0551 -1.2225 -0.2718 9 7 1.3701 -2.3622 0.3464 10 6 0.2264 -2.3398 1.2685 11 6 0.4986 -3.3183 2.4155 12 6 0.8135 -4.7001 1.8379 13 7 1.0424 -5.6488 2.9359 14 6 0.7621 -7.0261 2.5087 15 6 1.5591 -8.0035 3.3771 16 6 1.2177 -9.4378 2.9669 17 7 -0.2228 -9.6671 3.1364 18 6 -0.5485 -11.0040 2.8967 19 6 -1.8663 -11.4298 3.0055 20 6 -2.1848 -12.7523 2.7673 21 6 -1.1930 -13.6534 2.4264 22 6 0.1190 -13.2318 2.3117 23 6 0.4446 -11.9107 2.5484 24 6 -1.0077 -8.7719 2.2768 25 6 -0.7328 -7.3178 2.6664 26 6 2.0687 -4.6165 0.9664 27 6 1.8142 -3.6530 -0.1972 28 1 -0.4850 0.8400 -0.0004 29 1 -0.6768 -2.6411 0.7378 30 1 0.0993 -1.3340 1.6686 31 1 -0.3817 -3.3832 3.0549 32 1 1.3484 -2.9661 3.0002 33 1 -0.0267 -5.0408 1.2329 34 1 1.9815 -5.5659 3.2956 35 1 1.0490 -7.1491 1.4645 36 1 1.3002 -7.8534 4.4253 37 1 2.6257 -7.8288 3.2364 38 1 1.7728 -10.1364 3.5929 39 1 1.4895 -9.5911 1.9225 40 1 -2.6408 -10.7272 3.2753 41 1 -3.2092 -13.0841 2.8522 42 1 -1.4441 -14.6882 2.2453 43 1 0.8907 -13.9374 2.0411 44 1 1.4701 -11.5830 2.4633 45 1 -0.7256 -8.9285 1.2357 46 1 -2.0690 -8.9869 2.4015 47 1 -1.0277 -7.1569 3.7033 48 1 -1.3036 -6.6531 2.0179 49 1 2.9035 -4.2519 1.5649 50 1 2.3059 -5.6054 0.5744 51 1 1.0405 -4.0613 -0.8474 52 1 2.7332 -3.5131 -0.7662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610813708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:26:32 Heat of formation + Delta-G solvation = 52.655694 kcal Electronic energy + Delta-G solvation = -28261.674760 eV Core-core repulsion = 24646.938068 eV Total energy + Delta-G solvation = -3614.736693 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.216 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.63009 -38.70843 -37.52808 -35.36597 -33.09091 -31.86567 -31.35758 -30.62477 -29.99982 -29.31789 -27.93189 -24.92580 -24.18720 -23.55924 -22.18769 -21.92726 -21.56254 -20.96857 -19.87083 -19.11202 -17.96137 -16.81731 -16.06777 -15.73860 -15.48483 -15.08842 -14.91726 -14.68112 -14.47734 -14.16424 -13.84941 -13.75521 -13.57835 -13.48134 -13.10459 -13.01295 -12.84801 -12.68137 -12.29757 -12.18633 -11.69639 -11.67362 -11.43253 -11.31389 -11.26582 -11.07261 -10.87679 -10.77589 -10.70257 -10.42445 -10.21546 -10.16467 -9.94776 -9.92255 -9.69252 -9.43221 -9.20092 -8.47875 -8.06793 -8.05148 -6.65640 -5.77625 -3.20088 1.12886 1.14808 3.34567 3.37517 3.45389 3.47542 3.65147 4.22677 4.49718 4.50516 4.58636 4.69809 4.73964 4.87194 4.95701 5.04687 5.09528 5.16539 5.26570 5.32696 5.33091 5.38302 5.41676 5.48159 5.51868 5.52667 5.58110 5.65243 5.69798 5.80806 5.88344 5.91854 6.02327 6.06848 6.13027 6.16492 6.27523 6.30218 6.33166 6.50502 6.53899 6.63459 6.66238 6.71407 6.78417 6.86739 6.95059 7.07389 7.37274 7.41634 7.66106 7.71499 7.81303 8.46965 9.23041 9.86416 10.43360 11.30916 Molecular weight = 329.22amu Principal moments of inertia in cm(-1) A = 0.034857 B = 0.002041 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.095218 B =13716.179496 C =13910.684822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.251 4.251 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.171 3.829 11 C -0.124 4.124 12 C 0.097 3.903 13 N -0.682 5.682 14 C 0.086 3.914 15 C -0.119 4.119 16 C 0.055 3.945 17 N -0.488 5.488 18 C 0.117 3.883 19 C -0.143 4.143 20 C -0.095 4.095 21 C -0.153 4.153 22 C -0.094 4.094 23 C -0.175 4.175 24 C 0.060 3.940 25 C -0.106 4.106 26 C -0.159 4.159 27 C 0.150 3.850 28 H 0.253 0.747 29 H 0.016 0.984 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.337 0.663 35 H 0.041 0.959 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.045 0.955 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.126 0.874 45 H 0.042 0.958 46 H 0.082 0.918 47 H 0.079 0.921 48 H 0.072 0.928 49 H 0.059 0.941 50 H 0.043 0.957 51 H 0.015 0.985 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.132 -25.327 6.575 26.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.044 3.956 11 C -0.164 4.164 12 C -0.013 4.013 13 N -0.312 5.312 14 C -0.024 4.024 15 C -0.158 4.158 16 C -0.072 4.072 17 N -0.202 5.202 18 C 0.019 3.981 19 C -0.163 4.163 20 C -0.114 4.114 21 C -0.172 4.172 22 C -0.113 4.113 23 C -0.196 4.196 24 C -0.065 4.065 25 C -0.144 4.144 26 C -0.200 4.200 27 C 0.022 3.978 28 H 0.063 0.937 29 H 0.034 0.966 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.156 0.844 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.063 0.937 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.144 0.856 45 H 0.060 0.940 46 H 0.101 0.899 47 H 0.098 0.902 48 H 0.091 0.909 49 H 0.077 0.923 50 H 0.061 0.939 51 H 0.033 0.967 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.959 -24.855 7.333 25.988 hybrid contribution 1.409 0.455 -1.289 1.963 sum -0.550 -24.401 6.044 25.144 Atomic orbital electron populations 1.70039 1.05249 1.25369 1.54023 1.25047 0.95296 0.98409 1.00968 0.86237 0.79344 0.84004 0.77271 1.20305 1.21757 1.21532 1.19212 0.92502 0.84857 1.41533 0.91793 1.44075 1.35938 1.01391 1.50101 1.20806 0.88454 0.98312 0.87997 1.22170 1.00479 0.94108 0.99662 1.21554 0.96687 0.92917 0.90101 1.60740 1.32178 1.03195 1.35056 1.21509 0.95285 0.88784 0.96804 1.21806 0.99480 0.92853 1.01622 1.22234 0.86949 0.97853 1.00150 1.59003 1.06900 1.02181 1.52140 1.19031 0.93905 0.89572 0.95572 1.20829 0.95056 0.96434 1.03988 1.21020 0.99273 0.92944 0.98164 1.21054 0.93173 0.99615 1.03326 1.21003 0.96471 0.95365 0.98451 1.21337 0.99510 0.94375 1.04357 1.22273 0.97866 0.92538 0.93839 1.21631 0.96149 0.93288 1.03376 1.22688 0.98546 0.98744 0.99999 1.20804 0.97444 0.87003 0.92521 0.93690 0.96598 0.89401 0.92752 0.92902 0.91436 0.84439 0.94149 0.90025 0.91250 0.89956 0.93718 0.85734 0.86003 0.86357 0.86219 0.85649 0.93991 0.89940 0.90198 0.90937 0.92273 0.93852 0.96745 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.34 11.20 55.49 0.62 -25.72 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.80 29.59 -169.99 -5.03 16.77 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.25 -6.94 9.58 -15.06 -0.14 -7.09 16 8 H 0.06 1.74 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -14.90 2.99 -172.32 -0.52 -15.41 16 10 C 0.17 4.09 5.30 -3.71 -0.02 4.07 16 11 C -0.12 -2.41 5.69 -26.61 -0.15 -2.56 16 12 C 0.10 1.60 2.25 -67.67 -0.15 1.45 16 13 N -0.68 -9.35 6.06 -99.56 -0.60 -9.95 16 14 C 0.09 1.01 2.36 -67.59 -0.16 0.85 16 15 C -0.12 -1.17 5.36 -26.65 -0.14 -1.31 16 16 C 0.06 0.51 4.15 -3.83 -0.02 0.50 16 17 N -0.49 -4.98 4.70 -171.15 -0.80 -5.78 16 18 C 0.12 1.19 5.64 -83.79 -0.47 0.71 16 19 C -0.14 -1.34 9.16 -39.38 -0.36 -1.70 16 20 C -0.10 -0.79 10.04 -39.61 -0.40 -1.18 16 21 C -0.15 -1.21 10.04 -39.55 -0.40 -1.61 16 22 C -0.09 -0.78 10.04 -39.61 -0.40 -1.17 16 23 C -0.17 -1.61 8.82 -39.38 -0.35 -1.96 16 24 C 0.06 0.61 5.26 -3.84 -0.02 0.59 16 25 C -0.11 -1.21 5.58 -26.65 -0.15 -1.36 16 26 C -0.16 -2.72 5.31 -26.61 -0.14 -2.86 16 27 C 0.15 3.15 6.52 -3.71 -0.02 3.13 16 28 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 2.37 6.06 -51.93 -0.31 2.05 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.07 1.18 7.16 -51.93 -0.37 0.81 16 34 H 0.34 4.43 8.11 -39.29 -0.32 4.11 16 35 H 0.04 0.51 7.11 -51.93 -0.37 0.15 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.69 6.98 -51.93 -0.36 0.32 16 39 H 0.04 0.41 7.73 -51.93 -0.40 0.01 16 40 H 0.12 1.07 7.15 -52.49 -0.38 0.69 16 41 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 42 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 43 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 44 H 0.13 1.01 5.81 -52.49 -0.30 0.70 16 45 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.77 6.71 -51.93 -0.35 0.42 16 47 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.07 0.89 7.49 -51.93 -0.39 0.50 16 49 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 50 H 0.04 0.66 7.41 -51.93 -0.39 0.27 16 51 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 52 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 LS Contribution 391.17 15.07 5.89 5.89 Total: -1.00 -29.57 391.17 -12.99 -42.56 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -8.98 Total: 3.21 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -3.58 Total: -11.57 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -1.30 Total: -56.87 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.57 -12.99 -42.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.216 kcal (2) G-P(sol) polarization free energy of solvation -29.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds