Wall clock time and date at job start Sat Apr 11 2020 02:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86790 * 119.99978 * 2 1 4 4 H 1.48505 * 109.47443 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47096 * 299.99878 * 3 2 1 6 6 H 1.48504 * 109.47391 * 59.99654 * 3 2 1 7 7 C 1.38810 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00258 * 163.07340 * 7 2 1 9 9 N 1.36939 * 120.00358 * 343.07041 * 7 2 1 10 10 C 1.46930 * 120.62536 * 331.82792 * 9 7 2 11 11 C 1.53197 * 108.77440 * 233.62667 * 10 9 7 12 12 C 1.53045 * 109.31179 * 305.36946 * 11 10 9 13 13 N 1.46901 * 109.46044 * 181.38689 * 12 11 10 14 14 C 1.46894 * 111.00236 * 154.97246 * 13 12 11 15 15 C 1.53125 * 109.52415 * 154.99986 * 14 13 12 16 16 C 1.53038 * 109.27612 * 177.62014 * 15 14 13 17 17 N 1.46847 * 109.52513 * 300.82003 * 16 15 14 18 18 C 1.39675 * 110.99943 * 185.84193 * 17 16 15 19 19 C 1.38913 * 120.07214 * 179.97438 * 18 17 16 20 20 C 1.38107 * 119.92078 * 179.97438 * 19 18 17 21 21 C 1.38279 * 120.07459 * 0.27719 * 20 19 18 22 22 C 1.38284 * 120.15312 * 359.44987 * 21 20 19 23 23 C 1.38107 * 120.07365 * 0.54781 * 22 21 20 24 24 C 1.46845 * 111.19766 * 61.73964 * 17 16 15 25 25 C 1.53027 * 109.52563 * 298.25936 * 24 17 16 26 26 C 1.53039 * 109.53084 * 61.36977 * 12 11 10 27 27 C 1.46922 * 120.63342 * 151.84608 * 9 7 2 28 28 H 0.96993 * 120.00285 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.58932 * 113.84678 * 10 9 7 30 30 H 1.08991 * 109.59053 * 353.41562 * 10 9 7 31 31 H 1.08992 * 109.50058 * 185.41541 * 11 10 9 32 32 H 1.09004 * 109.49662 * 65.31619 * 11 10 9 33 33 H 1.09005 * 109.45469 * 301.35504 * 12 11 10 34 34 H 1.00905 * 110.99781 * 278.92877 * 13 12 11 35 35 H 1.08989 * 109.52384 * 34.86804 * 14 13 12 36 36 H 1.08999 * 109.50112 * 57.68040 * 15 14 13 37 37 H 1.08998 * 109.49813 * 297.55898 * 15 14 13 38 38 H 1.09002 * 109.45777 * 180.80233 * 16 15 14 39 39 H 1.09002 * 109.45286 * 60.83399 * 16 15 14 40 40 H 1.08000 * 120.03616 * 0.02562 * 19 18 17 41 41 H 1.08004 * 119.95841 * 179.97438 * 20 19 18 42 42 H 1.08005 * 119.92495 * 179.70044 * 21 20 19 43 43 H 1.08003 * 119.96414 * 180.25746 * 22 21 20 44 44 H 1.07998 * 120.04283 * 179.70599 * 23 22 21 45 45 H 1.08999 * 109.45933 * 58.28063 * 24 17 16 46 46 H 1.09005 * 109.46085 * 178.24110 * 24 17 16 47 47 H 1.08997 * 109.50544 * 299.23747 * 25 24 17 48 48 H 1.09000 * 109.50303 * 179.11874 * 25 24 17 49 49 H 1.09000 * 109.49624 * 58.57833 * 26 12 11 50 50 H 1.08993 * 109.49777 * 178.67719 * 26 12 11 51 51 H 1.09004 * 109.59003 * 246.15803 * 27 9 7 52 52 H 1.08994 * 109.58726 * 6.44048 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3963 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0551 -1.2225 -0.2718 9 7 1.3701 -2.3622 0.3464 10 6 0.2264 -2.3398 1.2685 11 6 0.4986 -3.3183 2.4155 12 6 0.8135 -4.7001 1.8379 13 7 1.0424 -5.6488 2.9359 14 6 0.7621 -7.0261 2.5087 15 6 1.5591 -8.0035 3.3771 16 6 1.2177 -9.4378 2.9669 17 7 -0.2228 -9.6671 3.1364 18 6 -0.5485 -11.0040 2.8967 19 6 -1.8663 -11.4298 3.0055 20 6 -2.1848 -12.7523 2.7673 21 6 -1.1930 -13.6534 2.4264 22 6 0.1190 -13.2318 2.3117 23 6 0.4446 -11.9107 2.5484 24 6 -1.0077 -8.7719 2.2768 25 6 -0.7328 -7.3178 2.6664 26 6 2.0687 -4.6165 0.9664 27 6 1.8142 -3.6530 -0.1972 28 1 -0.4850 0.8400 -0.0004 29 1 -0.6768 -2.6411 0.7378 30 1 0.0993 -1.3340 1.6686 31 1 -0.3817 -3.3832 3.0549 32 1 1.3484 -2.9661 3.0002 33 1 -0.0267 -5.0408 1.2329 34 1 1.9815 -5.5659 3.2956 35 1 1.0490 -7.1491 1.4645 36 1 1.3002 -7.8534 4.4253 37 1 2.6257 -7.8288 3.2364 38 1 1.7728 -10.1364 3.5929 39 1 1.4895 -9.5911 1.9225 40 1 -2.6408 -10.7272 3.2753 41 1 -3.2092 -13.0841 2.8522 42 1 -1.4441 -14.6882 2.2453 43 1 0.8907 -13.9374 2.0411 44 1 1.4701 -11.5830 2.4633 45 1 -0.7256 -8.9285 1.2357 46 1 -2.0690 -8.9869 2.4015 47 1 -1.0277 -7.1569 3.7033 48 1 -1.3036 -6.6531 2.0179 49 1 2.9035 -4.2519 1.5649 50 1 2.3059 -5.6054 0.5744 51 1 1.0405 -4.0613 -0.8474 52 1 2.7332 -3.5131 -0.7662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610813708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:26:31 Heat of formation + Delta-G solvation = 36.281748 kcal Electronic energy + Delta-G solvation = -28262.384788 eV Core-core repulsion = 24646.938068 eV Total energy + Delta-G solvation = -3615.446720 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.36855 -39.87038 -38.66558 -36.66115 -34.58412 -32.90655 -32.58246 -31.64831 -31.31473 -30.64190 -29.00728 -26.62029 -25.02778 -24.60821 -23.78830 -23.07780 -22.49393 -21.98893 -20.95578 -20.52567 -18.77511 -18.60733 -16.95037 -16.73732 -16.59503 -16.38351 -16.09121 -15.74740 -15.44542 -15.33082 -15.14784 -14.89331 -14.85471 -14.66630 -14.40440 -14.29693 -13.86349 -13.77002 -13.55931 -13.22532 -13.01679 -12.95837 -12.63194 -12.56780 -12.40025 -12.32115 -12.18899 -12.03641 -11.98471 -11.91314 -11.89284 -11.64187 -11.36774 -11.25538 -11.10393 -10.61851 -10.56067 -9.83042 -9.25939 -8.75512 -8.69559 -7.88510 -5.34227 0.48453 0.51410 1.45031 1.46939 1.57500 2.50208 2.65613 2.97598 3.12992 3.28461 3.68185 3.72168 3.80605 3.96975 4.01688 4.10307 4.13085 4.19866 4.21828 4.30964 4.33156 4.38631 4.47268 4.53076 4.53846 4.60315 4.63964 4.66289 4.71572 4.78076 4.79838 4.85284 4.89320 4.97958 5.04912 5.10414 5.14216 5.17048 5.24383 5.27463 5.32537 5.36782 5.40839 5.51872 5.54738 5.64301 5.68733 5.73862 5.89411 6.07134 6.19312 6.38848 6.39087 6.56405 7.13941 7.85126 8.37022 9.18143 Molecular weight = 329.22amu Principal moments of inertia in cm(-1) A = 0.034857 B = 0.002041 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.095218 B =13716.179496 C =13910.684822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.053 4.053 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.262 4.262 8 H 0.066 0.934 9 N -0.610 5.610 10 C 0.178 3.822 11 C -0.110 4.110 12 C 0.110 3.890 13 N -0.679 5.679 14 C 0.089 3.911 15 C -0.111 4.111 16 C 0.057 3.943 17 N -0.495 5.495 18 C 0.098 3.902 19 C -0.157 4.157 20 C -0.102 4.102 21 C -0.157 4.157 22 C -0.101 4.101 23 C -0.185 4.185 24 C 0.067 3.933 25 C -0.101 4.101 26 C -0.143 4.143 27 C 0.144 3.856 28 H 0.250 0.750 29 H -0.007 1.007 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.345 0.655 35 H 0.037 0.963 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.047 0.953 40 H 0.126 0.874 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.135 0.865 45 H 0.038 0.962 46 H 0.087 0.913 47 H 0.071 0.929 48 H 0.060 0.940 49 H 0.058 0.942 50 H 0.072 0.928 51 H 0.010 0.990 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.155 -27.574 7.118 28.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.248 4.248 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.219 1.219 6 H -0.216 1.216 7 C -0.392 4.392 8 H 0.083 0.917 9 N -0.334 5.334 10 C 0.052 3.948 11 C -0.150 4.150 12 C 0.000 4.000 13 N -0.309 5.309 14 C -0.021 4.021 15 C -0.149 4.149 16 C -0.070 4.070 17 N -0.210 5.210 18 C 0.000 4.000 19 C -0.178 4.178 20 C -0.120 4.120 21 C -0.176 4.176 22 C -0.119 4.119 23 C -0.206 4.206 24 C -0.059 4.059 25 C -0.140 4.140 26 C -0.184 4.184 27 C 0.018 3.982 28 H 0.059 0.941 29 H 0.011 0.989 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.164 0.836 35 H 0.055 0.945 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.065 0.935 40 H 0.144 0.856 41 H 0.158 0.842 42 H 0.157 0.843 43 H 0.158 0.842 44 H 0.152 0.848 45 H 0.056 0.944 46 H 0.105 0.895 47 H 0.089 0.911 48 H 0.079 0.921 49 H 0.077 0.923 50 H 0.090 0.910 51 H 0.028 0.972 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.651 -27.145 7.884 28.274 hybrid contribution 0.970 1.053 -1.490 2.067 sum 0.319 -26.092 6.394 26.866 Atomic orbital electron populations 1.70191 1.06699 1.25805 1.55446 1.25827 0.96082 1.01591 1.01302 0.85207 0.78626 0.79812 0.76796 1.19053 1.21894 1.21626 1.19536 0.92779 0.86074 1.40842 0.91671 1.44334 1.35966 1.02285 1.50795 1.20590 0.87602 0.97642 0.88995 1.21923 1.00607 0.94704 0.97723 1.21245 0.96244 0.91963 0.90511 1.60614 1.32814 1.03826 1.33649 1.21544 0.95702 0.87884 0.96993 1.21735 0.99924 0.92581 1.00662 1.22247 0.86648 0.97572 1.00499 1.59024 1.07327 1.02403 1.52232 1.19190 0.94517 0.89581 0.96669 1.20999 0.95067 0.97189 1.04509 1.21307 1.00470 0.92585 0.97641 1.21390 0.93049 1.00657 1.02468 1.21318 0.97271 0.95426 0.97932 1.21531 0.99817 0.94786 1.04430 1.22168 0.98347 0.91744 0.93618 1.21555 0.95927 0.94013 1.02494 1.22510 0.98598 0.98914 0.98342 1.20972 0.97054 0.86126 0.94069 0.94094 0.98876 0.92901 0.91952 0.93343 0.92180 0.83590 0.94507 0.90617 0.89789 0.88847 0.93512 0.85644 0.84177 0.84274 0.84237 0.84775 0.94393 0.89465 0.91060 0.92141 0.92310 0.90987 0.97224 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.26 11.20 21.65 0.24 -56.02 16 2 C -0.05 -2.99 4.92 84.86 0.42 -2.58 16 3 Si 0.97 45.41 29.59 68.60 2.03 47.44 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 7 C -0.26 -14.64 9.58 84.03 0.81 -13.84 16 8 H 0.07 3.55 7.89 -2.91 -0.02 3.53 16 9 N -0.61 -31.14 2.99 -699.09 -2.09 -33.24 16 10 C 0.18 8.80 5.30 86.36 0.46 9.26 16 11 C -0.11 -4.25 5.69 30.68 0.17 -4.07 16 12 C 0.11 3.53 2.25 44.94 0.10 3.63 16 13 N -0.68 -17.36 6.06 -468.92 -2.84 -20.20 16 14 C 0.09 1.91 2.36 45.00 0.11 2.02 16 15 C -0.11 -1.92 5.36 30.65 0.16 -1.75 16 16 C 0.06 0.94 4.15 86.33 0.36 1.30 16 17 N -0.49 -9.46 4.70 -695.40 -3.27 -12.72 16 18 C 0.10 1.86 5.64 38.21 0.22 2.07 16 19 C -0.16 -2.80 9.16 22.40 0.21 -2.59 16 20 C -0.10 -1.50 10.04 22.25 0.22 -1.28 16 21 C -0.16 -2.15 10.04 22.29 0.22 -1.92 16 22 C -0.10 -1.44 10.04 22.25 0.22 -1.22 16 23 C -0.18 -3.08 8.82 22.40 0.20 -2.88 16 24 C 0.07 1.30 5.26 86.32 0.45 1.76 16 25 C -0.10 -2.23 5.58 30.64 0.17 -2.06 16 26 C -0.14 -4.64 5.31 30.67 0.16 -4.48 16 27 C 0.14 6.00 6.52 86.37 0.56 6.57 16 28 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 29 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 30 H 0.05 2.97 6.06 -2.39 -0.01 2.95 16 31 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.06 2.05 7.16 -2.38 -0.02 2.03 16 34 H 0.34 8.16 8.11 -89.69 -0.73 7.43 16 35 H 0.04 0.85 7.11 -2.39 -0.02 0.83 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.09 1.34 6.98 -2.39 -0.02 1.32 16 39 H 0.05 0.76 7.73 -2.39 -0.02 0.74 16 40 H 0.13 2.08 7.15 -2.91 -0.02 2.06 16 41 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 42 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 43 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 44 H 0.13 1.88 5.81 -2.91 -0.02 1.86 16 45 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.09 1.59 6.71 -2.38 -0.02 1.57 16 47 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.06 1.47 7.49 -2.39 -0.02 1.45 16 49 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 50 H 0.07 1.96 7.41 -2.39 -0.02 1.94 16 51 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 52 H 0.05 2.13 7.93 -2.39 -0.02 2.11 16 Total: -1.00 -64.49 391.17 -0.54 -65.03 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.16 Total: 21.77 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 5.22 Total: -12.06 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -7.96 Total: -122.18 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -64.49 -0.54 -65.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.315 kcal (2) G-P(sol) polarization free energy of solvation -64.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds