Wall clock time and date at job start Sat Apr 11 2020 02:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.47163 * 2 1 4 4 N 1.46899 * 109.47220 * 119.99667 * 2 1 3 5 5 C 1.46901 * 111.00138 * 275.00306 * 4 2 1 6 6 H 1.09002 * 109.47193 * 35.00281 * 5 4 2 7 7 C 1.52994 * 109.47197 * 274.99653 * 5 4 2 8 8 C 1.52997 * 109.47291 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46790 * 60.00496 * 8 7 5 10 10 C 1.53002 * 109.47221 * 299.99898 * 9 8 7 11 11 H 1.09006 * 109.46735 * 300.00387 * 10 9 8 12 12 C 1.52999 * 109.47576 * 180.02562 * 10 9 8 13 13 C 1.53005 * 117.49990 * 128.61873 * 12 10 9 14 14 C 1.53002 * 117.49588 * 59.99709 * 12 10 9 15 15 C 1.52999 * 109.46955 * 154.99672 * 5 4 2 16 16 C 1.50698 * 109.47197 * 240.00198 * 2 1 3 17 17 C 1.38306 * 119.92669 * 280.27119 * 16 2 1 18 18 C 1.38104 * 120.06267 * 180.31957 * 17 16 2 19 19 C 1.38874 * 119.93261 * 359.43483 * 18 17 16 20 20 O 1.35748 * 120.06919 * 180.25382 * 19 18 17 21 21 C 1.34830 * 117.00158 * 354.45958 * 20 19 18 22 22 H 1.08005 * 119.99657 * 5.05386 * 21 20 19 23 23 C 1.38652 * 120.00222 * 185.06116 * 21 20 19 24 24 N 1.31559 * 120.00021 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00107 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46927 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47291 * 119.99805 * 25 23 21 28 28 H 1.48495 * 109.47132 * 240.00027 * 25 23 21 29 29 C 1.38882 * 119.86307 * 0.26829 * 19 18 17 30 30 C 1.38102 * 119.92770 * 0.02562 * 29 19 18 31 31 H 1.08995 * 109.46900 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47016 * 299.99933 * 1 2 3 33 33 H 1.08998 * 109.47254 * 60.00249 * 1 2 3 34 34 H 1.00908 * 110.99802 * 38.95598 * 4 2 1 35 35 H 1.09002 * 109.47561 * 300.00402 * 7 5 4 36 36 H 1.09002 * 109.46915 * 60.00465 * 7 5 4 37 37 H 1.08998 * 109.47479 * 179.97438 * 8 7 5 38 38 H 1.08995 * 109.47698 * 300.00600 * 8 7 5 39 39 H 1.08999 * 109.47419 * 60.00139 * 9 8 7 40 40 H 1.09000 * 109.47177 * 179.97438 * 9 8 7 41 41 H 1.09000 * 115.54790 * 274.33001 * 12 10 9 42 42 H 1.08995 * 117.49510 * 0.02562 * 13 12 10 43 43 H 1.08997 * 117.49421 * 145.02470 * 13 12 10 44 44 H 1.08996 * 117.49718 * 214.97934 * 14 12 10 45 45 H 1.08999 * 117.50312 * 0.02562 * 14 12 10 46 46 H 1.09002 * 109.47391 * 299.99830 * 15 5 4 47 47 H 1.09006 * 109.47335 * 60.00035 * 15 5 4 48 48 H 1.07999 * 119.96545 * 0.05362 * 17 16 2 49 49 H 1.08000 * 120.03238 * 179.69964 * 18 17 16 50 50 H 0.96996 * 119.99996 * 180.02562 * 24 23 21 51 51 H 1.07996 * 120.03759 * 180.02562 * 29 19 18 52 52 H 1.08006 * 119.96319 * 179.97438 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0825 0.2227 2.3469 6 1 1.2576 0.9330 2.2907 7 6 3.4111 0.9810 2.3224 8 6 3.4761 1.9345 3.5171 9 6 3.3705 1.1327 4.8159 10 6 2.0419 0.3743 4.8405 11 1 1.2170 1.0847 4.7838 12 6 1.9359 -0.4270 6.1395 13 6 0.6636 -0.2575 6.9723 14 6 1.9812 0.3518 7.4556 15 6 1.9770 -0.5796 3.6454 16 6 2.0324 -0.7104 -1.2305 17 6 2.0609 -2.0927 -1.2659 18 6 2.5269 -2.7465 -2.3896 19 6 2.9561 -2.0147 -3.4890 20 8 3.4098 -2.6546 -4.5969 21 6 3.5265 -3.9959 -4.5245 22 1 3.1873 -4.5206 -3.6435 23 6 4.0819 -4.7015 -5.5809 24 7 4.4947 -4.0624 -6.6541 25 14 4.2442 -6.5597 -5.4802 26 1 3.7102 -7.0334 -4.1780 27 1 3.4764 -7.1843 -6.5872 28 1 5.6754 -6.9386 -5.5951 29 6 2.9204 -0.6268 -3.4526 30 6 2.4590 0.0212 -2.3237 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.4496 -1.4979 1.4101 35 1 4.2360 0.2707 2.3786 36 1 3.4861 1.5526 1.3974 37 1 4.4229 2.4744 3.5000 38 1 2.6513 2.6448 3.4606 39 1 4.1954 0.4224 4.8726 40 1 3.4173 1.8119 5.6671 41 1 2.3988 -1.4137 6.1223 42 1 -0.0980 0.4246 6.5945 43 1 0.2893 -1.1328 7.5032 44 1 2.4736 -0.1226 8.3044 45 1 2.0861 1.4351 7.3961 46 1 1.0304 -1.1198 3.6629 47 1 2.8019 -1.2900 3.7017 48 1 1.7224 -2.6612 -0.4123 49 1 2.5535 -3.8259 -2.4148 50 1 4.8830 -4.5561 -7.3933 51 1 3.2531 -0.0549 -4.3062 52 1 2.4315 1.1005 -2.2947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818360708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:26:16 Heat of formation + Delta-G solvation = -3.976533 kcal Electronic energy + Delta-G solvation = -27691.311569 eV Core-core repulsion = 24041.826367 eV Total energy + Delta-G solvation = -3649.485201 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.80037 -39.01061 -37.63676 -36.50462 -34.82109 -32.25740 -31.31557 -30.71103 -30.08981 -28.09441 -27.45593 -25.29774 -23.86295 -23.00950 -22.57440 -22.16766 -21.63678 -20.27794 -19.92052 -19.67258 -17.91404 -17.01778 -16.30284 -15.74988 -15.24114 -14.85610 -14.69712 -14.51113 -14.43349 -14.21669 -14.05585 -13.60635 -13.49942 -13.38552 -13.09223 -12.76187 -12.62660 -12.53220 -12.32339 -12.00797 -11.94984 -11.86807 -11.70564 -11.50460 -11.32934 -11.26659 -11.14376 -10.80940 -10.77594 -10.67895 -10.62804 -10.50776 -10.43701 -10.34880 -10.11215 -9.97886 -9.25004 -8.77661 -8.28277 -8.07658 -7.07486 -6.39881 -3.98327 2.30501 2.41514 3.15124 3.16856 3.22246 3.45756 4.00681 4.02871 4.30263 4.51012 4.59414 4.64970 4.72429 4.77048 4.84962 5.02091 5.11884 5.14554 5.22385 5.26410 5.29354 5.33117 5.33654 5.36682 5.39987 5.42972 5.45793 5.49209 5.57115 5.71271 5.77538 5.78074 5.78834 5.84952 5.88288 5.94652 6.01021 6.02584 6.09697 6.11390 6.17150 6.21405 6.30034 6.37136 6.50024 6.78184 7.00166 7.04743 7.22422 7.33327 7.50019 7.51483 7.54990 7.91330 8.05864 9.06274 9.78027 10.78558 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.018576 B = 0.002146 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.961482 B =13042.510377 C =13651.132752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.142 3.858 3 H 0.075 0.925 4 N -0.676 5.676 5 C 0.090 3.910 6 H 0.040 0.960 7 C -0.107 4.107 8 C -0.120 4.120 9 C -0.111 4.111 10 C -0.052 4.052 11 H 0.067 0.933 12 C -0.145 4.145 13 C -0.182 4.182 14 C -0.181 4.181 15 C -0.112 4.112 16 C -0.164 4.164 17 C -0.050 4.050 18 C -0.235 4.235 19 C 0.152 3.848 20 O -0.181 6.181 21 C -0.389 4.389 22 H 0.092 0.908 23 C 0.037 3.963 24 N -0.865 5.865 25 Si 0.940 3.060 26 H -0.267 1.267 27 H -0.277 1.277 28 H -0.276 1.276 29 C -0.193 4.193 30 C -0.072 4.072 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.338 0.662 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.060 0.940 47 H 0.072 0.928 48 H 0.103 0.897 49 H 0.124 0.876 50 H 0.268 0.732 51 H 0.115 0.885 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.410 9.771 24.506 27.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.032 3.968 3 H 0.093 0.907 4 N -0.307 5.307 5 C -0.020 4.020 6 H 0.058 0.942 7 C -0.146 4.146 8 C -0.158 4.158 9 C -0.148 4.148 10 C -0.071 4.071 11 H 0.085 0.915 12 C -0.164 4.164 13 C -0.219 4.219 14 C -0.218 4.218 15 C -0.150 4.150 16 C -0.166 4.166 17 C -0.069 4.069 18 C -0.254 4.254 19 C 0.099 3.901 20 O -0.085 6.085 21 C -0.465 4.465 22 H 0.109 0.891 23 C -0.166 4.166 24 N -0.500 5.500 25 Si 0.765 3.235 26 H -0.191 1.191 27 H -0.202 1.202 28 H -0.202 1.202 29 C -0.212 4.212 30 C -0.090 4.090 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.157 0.843 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.122 0.878 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.078 0.922 47 H 0.091 0.909 48 H 0.122 0.878 49 H 0.142 0.858 50 H 0.078 0.922 51 H 0.133 0.867 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.571 9.860 23.889 26.438 hybrid contribution -0.892 -0.940 0.274 1.325 sum -6.463 8.920 24.164 26.556 Atomic orbital electron populations 1.22498 0.97461 1.02070 1.01417 1.20210 0.91592 0.96718 0.88267 0.90702 1.60626 1.57796 1.09217 1.03021 1.21476 0.96938 0.93938 0.89607 0.94244 1.21539 0.97719 0.97913 0.97395 1.21551 1.01563 0.97919 0.94744 1.21559 0.97184 0.98765 0.97316 1.20703 0.98051 0.96164 0.92152 0.91453 1.22370 1.01757 1.00544 0.91689 1.23007 0.91393 1.03213 1.04315 1.22924 1.01155 0.99901 0.97802 1.21725 1.02216 0.97947 0.93076 1.19073 1.08955 0.93522 0.95014 1.20411 0.97041 0.93394 0.96037 1.21151 1.08804 1.00438 0.94991 1.19379 0.91928 0.91862 0.86924 1.83975 1.72500 1.21885 1.30151 1.21358 1.41740 0.78907 1.04524 0.89097 1.25277 0.96140 1.00421 0.94805 1.70051 1.38288 1.36114 1.05564 0.85659 0.78349 0.80842 0.78646 1.19136 1.20228 1.20191 1.20152 1.09553 0.91800 0.99681 1.20426 0.97981 0.98017 0.92625 0.92446 0.93506 0.91934 0.84262 0.91171 0.92059 0.91905 0.92428 0.91730 0.92228 0.87835 0.88953 0.89040 0.89020 0.88864 0.92170 0.90904 0.87848 0.85794 0.92180 0.86727 0.87469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 9.12 37.16 0.34 -1.70 16 2 C 0.14 1.86 2.60 -68.86 -0.18 1.68 16 3 H 0.07 0.97 6.97 -51.92 -0.36 0.61 16 4 N -0.68 -8.12 5.52 -100.95 -0.56 -8.68 16 5 C 0.09 0.90 2.30 -67.72 -0.16 0.74 16 6 H 0.04 0.40 7.11 -51.93 -0.37 0.03 16 7 C -0.11 -1.10 5.41 -26.74 -0.14 -1.25 16 8 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 9 C -0.11 -0.84 5.04 -26.73 -0.13 -0.98 16 10 C -0.05 -0.39 2.34 -90.59 -0.21 -0.61 16 11 H 0.07 0.53 7.90 -51.93 -0.41 0.12 16 12 C -0.15 -1.05 5.15 -90.62 -0.47 -1.51 16 13 C -0.18 -1.22 10.18 -26.73 -0.27 -1.49 16 14 C -0.18 -1.17 9.73 -26.73 -0.26 -1.43 16 15 C -0.11 -0.97 4.46 -26.71 -0.12 -1.09 16 16 C -0.16 -2.78 4.96 -104.58 -0.52 -3.30 16 17 C -0.05 -0.93 9.31 -39.61 -0.37 -1.30 16 18 C -0.23 -5.19 9.17 -39.40 -0.36 -5.55 16 19 C 0.15 3.75 6.65 -39.11 -0.26 3.49 16 20 O -0.18 -5.27 9.76 0.06 0.00 -5.27 16 21 C -0.39 -11.05 9.49 30.89 0.29 -10.76 16 22 H 0.09 2.40 5.20 -52.48 -0.27 2.13 16 23 C 0.04 1.04 5.49 -17.52 -0.10 0.94 16 24 N -0.86 -25.73 13.67 55.48 0.76 -24.97 16 25 Si 0.94 20.86 29.55 -169.99 -5.02 15.84 16 26 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 27 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 28 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 29 C -0.19 -4.15 9.99 -39.39 -0.39 -4.54 16 30 C -0.07 -1.30 9.66 -39.61 -0.38 -1.68 16 31 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 32 H 0.05 0.47 7.43 -51.93 -0.39 0.09 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.34 3.85 7.43 -39.29 -0.29 3.55 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.69 7.43 -51.93 -0.39 0.30 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.42 7.29 -51.93 -0.38 0.04 16 41 H 0.10 0.77 8.11 -51.93 -0.42 0.35 16 42 H 0.09 0.60 8.05 -51.93 -0.42 0.18 16 43 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.09 0.58 7.61 -51.93 -0.40 0.18 16 46 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 47 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.10 1.66 7.25 -52.49 -0.38 1.28 16 49 H 0.12 2.77 5.64 -52.49 -0.30 2.47 16 50 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 51 H 0.11 2.40 8.06 -52.49 -0.42 1.97 16 52 H 0.11 1.63 8.03 -52.48 -0.42 1.20 16 LS Contribution 406.00 15.07 6.12 6.12 Total: -1.00 -30.12 406.00 -11.53 -41.65 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -8.97 Total: 6.79 kcal Atomic # 6 Polarization: -27.61 SS G_CDS: -3.85 Total: -31.46 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 0.20 Total: -33.65 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: 0.00 Total: -5.27 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.12 -11.53 -41.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818360708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.673 kcal (2) G-P(sol) polarization free energy of solvation -30.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds