Wall clock time and date at job start Sat Apr 11 2020 02:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.47163 * 2 1 4 4 N 1.46899 * 109.47220 * 119.99667 * 2 1 3 5 5 C 1.46901 * 111.00138 * 275.00306 * 4 2 1 6 6 H 1.09002 * 109.47193 * 35.00281 * 5 4 2 7 7 C 1.52994 * 109.47197 * 274.99653 * 5 4 2 8 8 C 1.52997 * 109.47291 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46790 * 60.00496 * 8 7 5 10 10 C 1.53002 * 109.47221 * 299.99898 * 9 8 7 11 11 H 1.09006 * 109.46735 * 300.00387 * 10 9 8 12 12 C 1.52999 * 109.47576 * 180.02562 * 10 9 8 13 13 C 1.53005 * 117.49990 * 128.61873 * 12 10 9 14 14 C 1.53002 * 117.49588 * 59.99709 * 12 10 9 15 15 C 1.52999 * 109.46955 * 154.99672 * 5 4 2 16 16 C 1.50698 * 109.47197 * 240.00198 * 2 1 3 17 17 C 1.38306 * 119.92669 * 280.27119 * 16 2 1 18 18 C 1.38104 * 120.06267 * 180.31957 * 17 16 2 19 19 C 1.38874 * 119.93261 * 359.43483 * 18 17 16 20 20 O 1.35748 * 120.06919 * 180.25382 * 19 18 17 21 21 C 1.34830 * 117.00158 * 354.45958 * 20 19 18 22 22 H 1.08005 * 119.99657 * 5.05386 * 21 20 19 23 23 C 1.38652 * 120.00222 * 185.06116 * 21 20 19 24 24 N 1.31559 * 120.00021 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00107 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46927 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47291 * 119.99805 * 25 23 21 28 28 H 1.48495 * 109.47132 * 240.00027 * 25 23 21 29 29 C 1.38882 * 119.86307 * 0.26829 * 19 18 17 30 30 C 1.38102 * 119.92770 * 0.02562 * 29 19 18 31 31 H 1.08995 * 109.46900 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47016 * 299.99933 * 1 2 3 33 33 H 1.08998 * 109.47254 * 60.00249 * 1 2 3 34 34 H 1.00908 * 110.99802 * 38.95598 * 4 2 1 35 35 H 1.09002 * 109.47561 * 300.00402 * 7 5 4 36 36 H 1.09002 * 109.46915 * 60.00465 * 7 5 4 37 37 H 1.08998 * 109.47479 * 179.97438 * 8 7 5 38 38 H 1.08995 * 109.47698 * 300.00600 * 8 7 5 39 39 H 1.08999 * 109.47419 * 60.00139 * 9 8 7 40 40 H 1.09000 * 109.47177 * 179.97438 * 9 8 7 41 41 H 1.09000 * 115.54790 * 274.33001 * 12 10 9 42 42 H 1.08995 * 117.49510 * 0.02562 * 13 12 10 43 43 H 1.08997 * 117.49421 * 145.02470 * 13 12 10 44 44 H 1.08996 * 117.49718 * 214.97934 * 14 12 10 45 45 H 1.08999 * 117.50312 * 0.02562 * 14 12 10 46 46 H 1.09002 * 109.47391 * 299.99830 * 15 5 4 47 47 H 1.09006 * 109.47335 * 60.00035 * 15 5 4 48 48 H 1.07999 * 119.96545 * 0.05362 * 17 16 2 49 49 H 1.08000 * 120.03238 * 179.69964 * 18 17 16 50 50 H 0.96996 * 119.99996 * 180.02562 * 24 23 21 51 51 H 1.07996 * 120.03759 * 180.02562 * 29 19 18 52 52 H 1.08006 * 119.96319 * 179.97438 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0825 0.2227 2.3469 6 1 1.2576 0.9330 2.2907 7 6 3.4111 0.9810 2.3224 8 6 3.4761 1.9345 3.5171 9 6 3.3705 1.1327 4.8159 10 6 2.0419 0.3743 4.8405 11 1 1.2170 1.0847 4.7838 12 6 1.9359 -0.4270 6.1395 13 6 0.6636 -0.2575 6.9723 14 6 1.9812 0.3518 7.4556 15 6 1.9770 -0.5796 3.6454 16 6 2.0324 -0.7104 -1.2305 17 6 2.0609 -2.0927 -1.2659 18 6 2.5269 -2.7465 -2.3896 19 6 2.9561 -2.0147 -3.4890 20 8 3.4098 -2.6546 -4.5969 21 6 3.5265 -3.9959 -4.5245 22 1 3.1873 -4.5206 -3.6435 23 6 4.0819 -4.7015 -5.5809 24 7 4.4947 -4.0624 -6.6541 25 14 4.2442 -6.5597 -5.4802 26 1 3.7102 -7.0334 -4.1780 27 1 3.4764 -7.1843 -6.5872 28 1 5.6754 -6.9386 -5.5951 29 6 2.9204 -0.6268 -3.4526 30 6 2.4590 0.0212 -2.3237 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.4496 -1.4979 1.4101 35 1 4.2360 0.2707 2.3786 36 1 3.4861 1.5526 1.3974 37 1 4.4229 2.4744 3.5000 38 1 2.6513 2.6448 3.4606 39 1 4.1954 0.4224 4.8726 40 1 3.4173 1.8119 5.6671 41 1 2.3988 -1.4137 6.1223 42 1 -0.0980 0.4246 6.5945 43 1 0.2893 -1.1328 7.5032 44 1 2.4736 -0.1226 8.3044 45 1 2.0861 1.4351 7.3961 46 1 1.0304 -1.1198 3.6629 47 1 2.8019 -1.2900 3.7017 48 1 1.7224 -2.6612 -0.4123 49 1 2.5535 -3.8259 -2.4148 50 1 4.8830 -4.5561 -7.3933 51 1 3.2531 -0.0549 -4.3062 52 1 2.4315 1.1005 -2.2947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818360708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:26:15 Heat of formation + Delta-G solvation = -18.918719 kcal Electronic energy + Delta-G solvation = -27691.959511 eV Core-core repulsion = 24041.826367 eV Total energy + Delta-G solvation = -3650.133143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.210 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.90426 -40.32295 -38.88719 -37.60815 -35.89511 -34.23863 -32.33259 -31.73985 -31.41642 -29.52789 -28.34519 -27.30059 -24.67628 -23.85296 -23.73542 -23.28669 -22.59380 -21.37904 -20.69189 -20.58017 -19.80167 -18.84484 -17.07562 -16.85113 -16.35665 -16.23899 -15.85435 -15.62916 -15.48664 -15.44581 -15.22454 -15.07072 -14.77221 -14.57825 -14.25418 -13.95266 -13.90515 -13.59167 -13.50853 -13.22539 -13.07118 -12.89819 -12.63652 -12.60331 -12.37435 -12.32162 -12.21684 -12.10367 -12.01196 -11.95355 -11.69600 -11.44857 -11.36436 -11.23669 -11.11485 -10.82901 -10.75631 -10.57081 -9.71768 -9.23715 -8.82049 -8.45597 -6.13198 0.65454 0.76963 1.34794 1.43490 1.53316 2.18599 2.83418 2.94041 3.13054 3.29142 3.56699 3.66350 3.87212 3.99721 4.03118 4.09603 4.15674 4.17242 4.20721 4.23902 4.34109 4.43394 4.44286 4.54396 4.57752 4.63210 4.66209 4.70846 4.74743 4.77084 4.79065 4.84295 4.90297 4.93551 5.06166 5.12127 5.13153 5.17116 5.22755 5.25291 5.29956 5.30494 5.33694 5.37661 5.40992 5.42473 5.47018 5.61945 5.67366 5.76945 5.84676 6.05757 6.25771 6.34308 6.59469 6.99466 7.82149 8.78162 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.018576 B = 0.002146 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.961482 B =13042.510377 C =13651.132752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.146 3.854 3 H 0.085 0.915 4 N -0.688 5.688 5 C 0.095 3.905 6 H 0.048 0.952 7 C -0.107 4.107 8 C -0.115 4.115 9 C -0.108 4.108 10 C -0.045 4.045 11 H 0.071 0.929 12 C -0.153 4.153 13 C -0.182 4.182 14 C -0.179 4.179 15 C -0.106 4.106 16 C -0.139 4.139 17 C -0.048 4.048 18 C -0.244 4.244 19 C 0.108 3.892 20 O -0.236 6.236 21 C -0.410 4.410 22 H 0.100 0.900 23 C -0.026 4.026 24 N -0.922 5.922 25 Si 1.019 2.981 26 H -0.252 1.252 27 H -0.268 1.268 28 H -0.269 1.269 29 C -0.204 4.204 30 C -0.067 4.067 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.344 0.656 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.133 0.867 49 H 0.114 0.886 50 H 0.272 0.728 51 H 0.110 0.890 52 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.907 10.538 28.001 30.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.036 3.964 3 H 0.103 0.897 4 N -0.319 5.319 5 C -0.014 4.014 6 H 0.066 0.934 7 C -0.145 4.145 8 C -0.153 4.153 9 C -0.145 4.145 10 C -0.064 4.064 11 H 0.089 0.911 12 C -0.171 4.171 13 C -0.219 4.219 14 C -0.215 4.215 15 C -0.144 4.144 16 C -0.140 4.140 17 C -0.067 4.067 18 C -0.263 4.263 19 C 0.059 3.941 20 O -0.143 6.143 21 C -0.486 4.486 22 H 0.117 0.883 23 C -0.223 4.223 24 N -0.561 5.561 25 Si 0.838 3.162 26 H -0.175 1.175 27 H -0.193 1.193 28 H -0.194 1.194 29 C -0.224 4.224 30 C -0.086 4.086 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.163 0.837 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.116 0.884 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.151 0.849 49 H 0.132 0.868 50 H 0.081 0.919 51 H 0.128 0.872 52 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.094 10.660 27.442 30.282 hybrid contribution -0.517 -0.924 -0.544 1.191 sum -7.610 9.735 26.898 29.601 Atomic orbital electron populations 1.22424 0.95640 1.02357 1.02475 1.20167 0.92794 0.96532 0.86862 0.89699 1.60533 1.58077 1.09898 1.03427 1.21473 0.96897 0.93758 0.89272 0.93379 1.21526 0.97324 0.97829 0.97866 1.21512 1.02084 0.97622 0.94085 1.21535 0.96976 0.98700 0.97339 1.20631 0.98024 0.95910 0.91844 0.91089 1.22329 1.02476 1.00481 0.91857 1.23068 0.91373 1.03450 1.04044 1.22985 1.00989 1.00132 0.97439 1.21661 1.02045 0.97824 0.92856 1.19656 1.05125 0.93148 0.96047 1.20717 0.96023 0.94393 0.95521 1.21244 1.09284 1.00137 0.95613 1.19923 0.93733 0.93219 0.87263 1.83935 1.75407 1.22294 1.32658 1.21833 1.42185 0.79392 1.05222 0.88301 1.26593 0.95473 1.06132 0.94088 1.70195 1.40584 1.38520 1.06812 0.84525 0.78674 0.73583 0.79388 1.17541 1.19260 1.19373 1.20412 1.10017 0.90873 1.01057 1.20848 0.96356 0.99979 0.91373 0.92589 0.91273 0.92144 0.83655 0.92923 0.93091 0.91657 0.91604 0.92551 0.91237 0.88327 0.88627 0.88688 0.88583 0.88422 0.91613 0.91998 0.84918 0.86792 0.91925 0.87152 0.83734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.26 9.12 71.98 0.66 -2.60 16 2 C 0.15 3.30 2.60 44.17 0.11 3.42 16 3 H 0.08 1.84 6.97 -2.38 -0.02 1.82 16 4 N -0.69 -14.36 5.52 -473.30 -2.61 -16.97 16 5 C 0.10 1.61 2.30 44.91 0.10 1.71 16 6 H 0.05 0.77 7.11 -2.39 -0.02 0.75 16 7 C -0.11 -1.96 5.41 30.59 0.17 -1.79 16 8 C -0.12 -1.61 5.92 30.59 0.18 -1.43 16 9 C -0.11 -1.39 5.04 30.60 0.15 -1.24 16 10 C -0.05 -0.56 2.34 -10.78 -0.03 -0.59 16 11 H 0.07 0.87 7.90 -2.38 -0.02 0.85 16 12 C -0.15 -1.86 5.15 -10.79 -0.06 -1.91 16 13 C -0.18 -1.98 10.18 30.60 0.31 -1.67 16 14 C -0.18 -1.89 9.73 30.60 0.30 -1.59 16 15 C -0.11 -1.56 4.46 30.61 0.14 -1.42 16 16 C -0.14 -4.35 4.96 -19.84 -0.10 -4.45 16 17 C -0.05 -1.71 9.31 22.25 0.21 -1.50 16 18 C -0.24 -10.98 9.17 22.39 0.21 -10.78 16 19 C 0.11 5.59 6.65 22.58 0.15 5.74 16 20 O -0.24 -14.64 9.76 -22.72 -0.22 -14.86 16 21 C -0.41 -24.56 9.49 67.92 0.64 -23.91 16 22 H 0.10 5.48 5.20 -2.91 -0.02 5.46 16 23 C -0.03 -1.51 5.49 84.83 0.47 -1.04 16 24 N -0.92 -57.85 13.67 21.61 0.30 -57.55 16 25 Si 1.02 43.94 29.55 68.60 2.03 45.97 16 26 H -0.25 -10.06 7.11 99.48 0.71 -9.36 16 27 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 28 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 29 C -0.20 -9.00 9.99 22.39 0.22 -8.77 16 30 C -0.07 -2.31 9.66 22.25 0.21 -2.09 16 31 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 32 H 0.07 1.06 7.43 -2.39 -0.02 1.05 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.34 6.62 7.43 -89.69 -0.67 5.96 16 35 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.05 1.03 7.43 -2.39 -0.02 1.01 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.07 0.78 7.29 -2.39 -0.02 0.76 16 41 H 0.10 1.29 8.11 -2.39 -0.02 1.27 16 42 H 0.10 0.98 8.05 -2.39 -0.02 0.96 16 43 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.10 0.95 7.61 -2.39 -0.02 0.93 16 46 H 0.07 0.91 8.12 -2.39 -0.02 0.89 16 47 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 48 H 0.13 3.90 7.25 -2.91 -0.02 3.88 16 49 H 0.11 5.27 5.64 -2.91 -0.02 5.25 16 50 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 51 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 52 H 0.14 3.89 8.03 -2.91 -0.02 3.87 16 Total: -1.00 -70.12 406.00 3.77 -66.35 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: 0.23 Total: 32.99 kcal Atomic # 6 Polarization: -59.98 SS G_CDS: 4.05 Total: -55.93 kcal Atomic # 7 Polarization: -72.21 SS G_CDS: -2.32 Total: -74.52 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.22 Total: -14.86 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -70.12 3.77 -66.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818360708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.431 kcal (2) G-P(sol) polarization free energy of solvation -70.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds