Wall clock time and date at job start Sat Apr 11 2020 02:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47377 * 2 1 4 4 C 1.52995 * 109.47377 * 180.02562 * 3 2 1 5 5 N 1.46909 * 109.47033 * 184.94183 * 4 3 2 6 6 C 1.46898 * 110.99832 * 160.32072 * 5 4 3 7 7 C 1.53000 * 109.47142 * 288.11950 * 6 5 4 8 8 C 1.47200 * 109.46968 * 179.39089 * 7 6 5 9 9 N 7.48417 * 149.51652 * 49.38057 * 2 1 3 10 10 C 1.46904 * 110.99486 * 284.27036 * 5 4 3 11 11 C 1.50703 * 109.46726 * 170.00159 * 10 5 4 12 12 C 1.38284 * 119.92369 * 89.99988 * 11 10 5 13 13 C 1.38105 * 120.07354 * 180.02562 * 12 11 10 14 14 C 1.38916 * 119.92529 * 359.97438 * 13 12 11 15 15 N 1.39672 * 120.07485 * 179.97438 * 14 13 12 16 16 C 1.46494 * 120.00058 * 0.02562 * 15 14 13 17 17 C 1.46505 * 119.99814 * 180.02562 * 15 14 13 18 18 C 1.50694 * 109.47524 * 89.99840 * 17 15 14 19 19 H 1.08005 * 119.99802 * 359.97438 * 18 17 15 20 20 C 1.37870 * 120.00122 * 179.97438 * 18 17 15 21 21 N 1.31525 * 120.00030 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00234 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47229 * 89.99324 * 22 20 18 24 24 H 1.48500 * 109.47346 * 210.00116 * 22 20 18 25 25 H 1.48500 * 109.46701 * 329.99731 * 22 20 18 26 26 C 1.38917 * 119.84708 * 0.26109 * 14 13 12 27 27 C 1.38098 * 119.92488 * 359.48762 * 26 14 13 28 28 H 1.09001 * 109.47065 * 59.99764 * 1 2 3 29 29 H 1.08996 * 109.47279 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47444 * 299.99933 * 1 2 3 31 31 H 1.09001 * 109.47444 * 240.00067 * 2 1 3 32 32 H 1.08998 * 109.47464 * 119.99917 * 2 1 3 33 33 H 1.09001 * 109.46779 * 59.99660 * 3 2 1 34 34 H 1.08998 * 109.46755 * 300.00351 * 3 2 1 35 35 H 1.09002 * 109.47155 * 64.93932 * 4 3 2 36 36 H 1.08998 * 109.46990 * 304.94020 * 4 3 2 37 37 H 1.09002 * 109.47214 * 48.11759 * 6 5 4 38 38 H 1.08996 * 109.46962 * 168.11925 * 6 5 4 39 39 H 1.09005 * 109.46435 * 299.38616 * 7 6 5 40 40 H 1.08998 * 109.47269 * 59.38330 * 7 6 5 41 41 H 1.09003 * 109.47168 * 50.00605 * 10 5 4 42 42 H 1.08992 * 109.47328 * 290.00120 * 10 5 4 43 43 H 1.07999 * 119.96652 * 0.04409 * 12 11 10 44 44 H 1.07995 * 120.04088 * 179.97438 * 13 12 11 45 45 H 1.09003 * 109.47197 * 270.00205 * 16 15 14 46 46 H 1.09005 * 109.47435 * 30.00064 * 16 15 14 47 47 H 1.09001 * 109.47465 * 150.00389 * 16 15 14 48 48 H 1.09002 * 109.46702 * 210.00201 * 17 15 14 49 49 H 1.09000 * 109.46788 * 329.99311 * 17 15 14 50 50 H 0.97004 * 119.99673 * 180.02562 * 21 20 18 51 51 H 1.07998 * 120.03259 * 179.72545 * 26 14 13 52 52 H 1.08006 * 119.96252 * 180.25765 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8224 0.1187 6 6 5.4528 2.8482 0.5839 7 6 5.5049 2.4507 2.0604 8 6 6.9024 2.4624 2.5227 9 7 7.9796 2.4717 2.8818 10 6 3.9159 3.5438 -1.1530 11 6 4.1935 5.0087 -0.9336 12 6 5.4810 5.4946 -1.0692 13 6 5.7391 6.8364 -0.8683 14 6 4.7034 7.6983 -0.5303 15 7 4.9609 9.0557 -0.3260 16 6 6.3243 9.5722 -0.4686 17 6 3.8674 9.9631 0.0310 18 6 3.7323 10.0214 1.5308 19 1 4.3944 9.4403 2.1556 20 6 2.7634 10.8164 2.1053 21 7 2.6452 10.8669 3.4142 22 14 1.6178 11.8210 1.0246 23 1 0.4127 11.0167 0.6990 24 1 1.2105 13.0533 1.7461 25 1 2.3196 12.1914 -0.2306 26 6 3.4120 7.2058 -0.3902 27 6 3.1601 5.8639 -0.5975 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9329 1.0073 -0.9318 36 1 3.9336 0.8538 0.8415 37 1 6.0448 2.1455 -0.0026 38 1 5.8575 3.8531 0.4636 39 1 4.9218 3.1597 2.6482 40 1 5.0902 1.4501 2.1822 41 1 2.9003 3.4188 -1.5288 42 1 4.6238 3.1446 -1.8792 43 1 6.2857 4.8242 -1.3327 44 1 6.7449 7.2152 -0.9739 45 1 6.8360 9.5174 0.4923 46 1 6.8646 8.9741 -1.2025 47 1 6.2870 10.6094 -0.8016 48 1 4.0825 10.9601 -0.3535 49 1 2.9366 9.5990 -0.4038 50 1 1.9633 11.4261 3.8183 51 1 2.6053 7.8724 -0.1231 52 1 2.1556 5.4811 -0.4928 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231818321.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:26:56 Heat of formation + Delta-G solvation = 52.760510 kcal Electronic energy + Delta-G solvation = -27763.271686 eV Core-core repulsion = 24148.539538 eV Total energy + Delta-G solvation = -3614.732148 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.216 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.48651 -38.25684 -36.67467 -35.82516 -34.74910 -32.67739 -31.86030 -30.61358 -30.42880 -28.48588 -28.21766 -26.04098 -24.45775 -23.92775 -22.27838 -21.69849 -21.30937 -20.65935 -19.61629 -17.75561 -16.95256 -16.73636 -15.90129 -15.82155 -15.58557 -15.14486 -14.74587 -14.55333 -14.35106 -14.09222 -13.77254 -13.59557 -13.44138 -13.23185 -13.16030 -12.97822 -12.82111 -12.63557 -12.55626 -12.39928 -12.09310 -11.85268 -11.67436 -11.59828 -11.52523 -11.50546 -11.24312 -11.10226 -11.05580 -10.92447 -10.66169 -10.60120 -10.53283 -10.25012 -10.08945 -9.59315 -8.93140 -8.66001 -8.41974 -8.32033 -6.44055 -6.14572 -4.14587 2.02472 2.11449 2.65304 2.72380 3.21034 3.28796 3.29506 3.59609 4.02058 4.16473 4.31775 4.49962 4.67238 4.77675 4.80727 4.92973 4.96185 5.04472 5.15285 5.15863 5.24190 5.24758 5.43451 5.45303 5.48612 5.53565 5.55741 5.64268 5.69211 5.70750 5.74643 5.78690 5.84307 5.91952 5.95307 6.03353 6.07589 6.20239 6.24239 6.27993 6.33314 6.50768 6.71181 6.72549 6.87418 6.93634 7.03077 7.07877 7.24214 7.48432 7.49329 7.53221 8.02392 8.31273 8.50518 8.93191 9.45117 10.98510 Molecular weight = 329.22amu Principal moments of inertia in cm(-1) A = 0.009631 B = 0.002999 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.583816 B = 9334.606046 C =10444.811922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.116 4.116 4 C 0.049 3.951 5 N -0.530 5.530 6 C 0.054 3.946 7 C -0.025 4.025 8 C 0.211 3.789 9 N -0.442 5.442 10 C 0.112 3.888 11 C -0.166 4.166 12 C -0.070 4.070 13 C -0.218 4.218 14 C 0.242 3.758 15 N -0.611 5.611 16 C 0.100 3.900 17 C 0.221 3.779 18 C -0.534 4.534 19 H 0.076 0.924 20 C 0.073 3.927 21 N -0.894 5.894 22 Si 0.872 3.128 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.266 1.266 26 C -0.187 4.187 27 C -0.049 4.049 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.034 0.966 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.096 0.904 39 H 0.120 0.880 40 H 0.105 0.895 41 H 0.080 0.920 42 H 0.034 0.966 43 H 0.106 0.894 44 H 0.113 0.887 45 H 0.044 0.956 46 H 0.055 0.945 47 H 0.060 0.940 48 H 0.027 0.973 49 H 0.027 0.973 50 H 0.265 0.735 51 H 0.128 0.872 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.412 -19.451 -10.539 22.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.154 4.154 4 C -0.078 4.078 5 N -0.254 5.254 6 C -0.076 4.076 7 C -0.065 4.065 8 C -0.107 4.107 9 N -0.119 5.119 10 C -0.014 4.014 11 C -0.169 4.169 12 C -0.089 4.089 13 C -0.241 4.241 14 C 0.136 3.864 15 N -0.317 5.317 16 C -0.044 4.044 17 C 0.100 3.900 18 C -0.572 4.572 19 H 0.094 0.906 20 C -0.130 4.130 21 N -0.532 5.532 22 Si 0.699 3.301 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.191 1.191 26 C -0.210 4.210 27 C -0.068 4.068 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.092 0.908 37 H 0.056 0.944 38 H 0.114 0.886 39 H 0.138 0.862 40 H 0.123 0.877 41 H 0.098 0.902 42 H 0.052 0.948 43 H 0.124 0.876 44 H 0.131 0.869 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.045 0.955 49 H 0.045 0.955 50 H 0.075 0.925 51 H 0.146 0.854 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.852 -18.858 -9.468 21.118 hybrid contribution -0.546 0.314 -0.925 1.119 sum 0.306 -18.544 -10.393 21.260 Atomic orbital electron populations 1.21761 0.95835 1.01355 1.02055 1.21495 0.95962 0.96998 1.01692 1.21612 0.94403 0.96226 1.03174 1.22241 0.95954 0.89200 1.00436 1.61939 1.19162 1.13948 1.30314 1.22069 0.89819 1.03137 0.92541 1.19294 0.84219 1.05274 0.97712 1.29174 0.95108 0.92994 0.93458 1.81206 1.12640 1.09102 1.08938 1.20860 1.01058 0.90815 0.88709 1.19139 0.93681 0.93989 1.10106 1.20525 0.95413 0.94363 0.98623 1.20522 0.98027 0.93574 1.11955 1.17913 0.93337 0.84136 0.91043 1.46718 1.08134 1.04777 1.72051 1.21479 0.83881 0.98721 1.00274 1.19674 0.85406 0.88386 0.96561 1.21461 1.18097 1.27683 0.90001 0.90574 1.24900 0.96979 0.96287 0.94849 1.69908 1.34203 1.39696 1.09421 0.86917 0.81805 0.80394 0.81011 1.19857 1.20980 1.19076 1.20839 0.96088 0.96004 1.08060 1.20613 0.98021 0.92325 0.95857 0.92776 0.93050 0.92531 0.92417 0.92092 0.90672 0.91970 0.94795 0.90814 0.94359 0.88620 0.86172 0.87746 0.90215 0.94788 0.87645 0.86899 0.93724 0.92622 0.92080 0.95507 0.95490 0.92511 0.85414 0.86883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.61 16 2 C -0.12 -0.77 5.93 -26.73 -0.16 -0.93 16 3 C -0.12 -0.85 5.25 -26.73 -0.14 -0.99 16 4 C 0.05 0.36 4.83 -3.82 -0.02 0.34 16 5 N -0.53 -4.95 4.38 -236.07 -1.03 -5.99 16 6 C 0.05 0.49 4.75 -3.83 -0.02 0.47 16 7 C -0.02 -0.20 5.77 -29.52 -0.17 -0.37 16 8 C 0.21 2.37 15.43 -20.77 -0.32 2.05 16 9 N -0.44 -6.36 18.53 42.14 0.78 -5.58 16 10 C 0.11 1.16 4.94 -4.97 -0.02 1.14 16 11 C -0.17 -2.25 4.94 -104.59 -0.52 -2.76 16 12 C -0.07 -0.98 7.83 -39.61 -0.31 -1.29 16 13 C -0.22 -3.54 9.21 -39.38 -0.36 -3.91 16 14 C 0.24 4.62 6.55 -83.78 -0.55 4.07 16 15 N -0.61 -12.47 2.99 -181.00 -0.54 -13.01 16 16 C 0.10 1.70 10.23 59.84 0.61 2.31 16 17 C 0.22 5.10 4.02 -5.19 -0.02 5.08 16 18 C -0.53 -14.67 9.94 -34.45 -0.34 -15.02 16 19 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16 20 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 21 N -0.89 -26.80 13.96 55.43 0.77 -26.02 16 22 Si 0.87 20.46 27.47 -169.99 -4.67 15.79 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 26 C -0.19 -3.52 9.20 -39.38 -0.36 -3.88 16 27 C -0.05 -0.76 9.69 -39.62 -0.38 -1.14 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.48 6.95 -51.93 -0.36 0.12 16 35 H 0.03 0.24 8.00 -51.93 -0.42 -0.17 16 36 H 0.07 0.45 6.23 -51.93 -0.32 0.12 16 37 H 0.04 0.32 8.05 -51.93 -0.42 -0.10 16 38 H 0.10 1.08 5.13 -51.93 -0.27 0.81 16 39 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.10 0.59 6.51 -51.93 -0.34 0.25 16 41 H 0.08 0.78 6.65 -51.93 -0.35 0.43 16 42 H 0.03 0.33 8.06 -51.93 -0.42 -0.09 16 43 H 0.11 1.24 7.73 -52.49 -0.41 0.84 16 44 H 0.11 1.69 6.14 -52.49 -0.32 1.37 16 45 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 0.79 6.20 -51.93 -0.32 0.47 16 47 H 0.06 0.96 7.89 -51.93 -0.41 0.55 16 48 H 0.03 0.62 6.95 -51.93 -0.36 0.25 16 49 H 0.03 0.62 5.64 -51.93 -0.29 0.33 16 50 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 51 H 0.13 2.62 6.15 -52.49 -0.32 2.30 16 52 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 413.86 15.07 6.24 6.24 Total: -1.00 -31.40 413.86 -9.99 -41.39 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -8.72 Total: 0.68 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -2.82 Total: -13.50 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.02 Total: -50.60 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.67 Total: 15.79 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -31.40 -9.99 -41.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231818321.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.151 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds