Wall clock time and date at job start Sat Apr 11 2020 02:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47194 * 2 1 4 4 C 1.53002 * 109.46654 * 240.00638 * 2 1 3 5 5 N 1.46503 * 109.47492 * 65.00270 * 4 2 1 6 6 C 1.36937 * 120.00050 * 179.72568 * 5 4 2 7 7 H 1.07998 * 119.99862 * 359.97438 * 6 5 4 8 8 C 1.38811 * 119.99914 * 179.97438 * 6 5 4 9 9 N 1.31625 * 120.00010 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 119.99959 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47243 * 59.99998 * 10 8 6 12 12 H 1.48501 * 109.47040 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47137 * 299.99860 * 10 8 6 14 14 C 1.52998 * 109.47273 * 120.00765 * 2 1 3 15 15 N 1.46502 * 109.46983 * 294.99910 * 14 2 1 16 16 C 1.34777 * 120.00168 * 180.02562 * 15 14 2 17 17 O 1.21285 * 119.99550 * 359.97438 * 16 15 14 18 18 C 1.50698 * 120.00227 * 179.97438 * 16 15 14 19 19 F 1.39895 * 110.64282 * 56.69591 * 18 16 15 20 20 C 1.54598 * 110.72391 * 293.54563 * 18 16 15 21 21 C 1.53985 * 105.14038 * 219.68265 * 20 18 16 22 22 N 1.47911 * 107.06023 * 358.77435 * 21 20 18 23 23 C 1.46893 * 110.99927 * 145.84005 * 22 21 20 24 24 C 1.53003 * 109.47245 * 55.22915 * 23 22 21 25 25 C 1.53002 * 109.47049 * 175.22663 * 23 22 21 26 26 C 1.52996 * 109.47763 * 295.22696 * 23 22 21 27 27 C 1.48540 * 105.81578 * 25.32974 * 22 21 20 28 28 H 1.08996 * 109.46682 * 299.99339 * 1 2 3 29 29 H 1.08996 * 109.47219 * 59.99355 * 1 2 3 30 30 H 1.08998 * 109.46830 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47645 * 304.99587 * 4 2 1 32 32 H 1.09014 * 109.46924 * 185.00033 * 4 2 1 33 33 H 0.96994 * 119.99548 * 359.97438 * 5 4 2 34 34 H 0.96990 * 119.99831 * 180.02562 * 9 8 6 35 35 H 1.09003 * 109.47178 * 54.99840 * 14 2 1 36 36 H 1.09004 * 109.47301 * 174.99810 * 14 2 1 37 37 H 0.97003 * 119.99884 * 0.02562 * 15 14 2 38 38 H 1.08999 * 110.30595 * 338.60155 * 20 18 16 39 39 H 1.09000 * 110.30534 * 100.76577 * 20 18 16 40 40 H 1.08996 * 109.91851 * 118.12599 * 21 20 18 41 41 H 1.09000 * 109.91790 * 239.42478 * 21 20 18 42 42 H 1.09002 * 109.46796 * 59.99460 * 24 23 22 43 43 H 1.08997 * 109.47450 * 179.97438 * 24 23 22 44 44 H 1.08994 * 109.47156 * 299.99854 * 24 23 22 45 45 H 1.09004 * 109.47196 * 60.00410 * 25 23 22 46 46 H 1.08997 * 109.47135 * 180.02562 * 25 23 22 47 47 H 1.09002 * 109.47087 * 300.00599 * 25 23 22 48 48 H 1.09006 * 109.47153 * 52.82985 * 26 23 22 49 49 H 1.08996 * 109.47852 * 172.82930 * 26 23 22 50 50 H 1.08999 * 109.47124 * 292.83645 * 26 23 22 51 51 H 1.08996 * 110.66397 * 202.35458 * 27 22 21 52 52 H 1.08996 * 110.66491 * 79.22980 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2494 5 7 1.6524 0.0356 -2.4425 6 6 2.0062 -0.4173 -3.6854 7 1 2.5714 -1.3321 -3.7861 8 6 1.6386 0.2995 -4.8159 9 7 0.9503 1.4147 -4.6931 10 14 2.1219 -0.3179 -6.5113 11 1 1.5356 -1.6641 -6.7336 12 1 1.6132 0.6208 -7.5434 13 1 3.6017 -0.4008 -6.6046 14 6 2.0401 -0.7214 1.2491 15 7 1.6525 0.0351 2.4424 16 6 1.9965 -0.4134 3.6659 17 8 2.6266 -1.4436 3.7790 18 6 1.5984 0.3650 4.8932 19 9 0.2116 0.5447 4.9350 20 6 2.3281 1.7272 4.9377 21 6 2.7037 1.9341 6.4167 22 7 2.1852 0.7674 7.1634 23 6 3.0771 0.4160 8.2764 24 6 3.2822 1.6398 9.1716 25 6 2.4505 -0.7150 9.0945 26 6 4.4275 -0.0428 7.7226 27 6 2.1026 -0.3403 6.1773 28 1 -0.3632 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6054 -1.7197 -1.2954 32 1 3.1264 -0.7994 -1.2058 33 1 1.1483 0.8593 -2.3517 34 1 0.6931 1.9153 -5.4830 35 1 1.6054 -1.7200 1.2949 36 1 3.1264 -0.7996 1.2054 37 1 1.1483 0.8588 2.3518 38 1 3.2258 1.6958 4.3202 39 1 1.6641 2.5232 4.6010 40 1 3.7873 1.9895 6.5203 41 1 2.2448 2.8489 6.7918 42 1 2.3201 1.9666 9.5661 43 1 3.9437 1.3789 9.9977 44 1 3.7285 2.4455 8.5888 45 1 2.3044 -1.5869 8.4568 46 1 3.1121 -0.9754 9.9206 47 1 1.4884 -0.3881 9.4890 48 1 4.8147 0.7118 7.0379 49 1 5.1293 -0.1815 8.5449 50 1 4.3006 -0.9855 7.1904 51 1 1.3895 -1.0960 6.5065 52 1 3.0850 -0.7828 6.0127 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753630495.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:26:19 Heat of formation + Delta-G solvation = -74.744847 kcal Electronic energy + Delta-G solvation = -29178.279911 eV Core-core repulsion = 25127.249492 eV Total energy + Delta-G solvation = -4051.030419 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.222 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.07763 -40.47409 -39.41755 -36.94716 -35.16596 -34.48790 -32.57138 -30.33467 -29.93891 -29.64228 -27.79056 -27.38560 -26.57186 -25.43492 -23.34047 -22.49805 -22.02927 -20.51437 -19.85142 -19.27224 -18.01744 -17.07431 -17.00755 -16.27717 -16.03013 -15.44232 -15.23121 -15.12668 -14.85382 -14.49171 -14.40142 -14.19477 -14.14091 -13.77117 -13.64111 -13.18974 -13.10934 -12.93173 -12.68630 -12.52682 -12.36431 -12.32097 -12.19886 -12.07574 -11.95792 -11.77957 -11.53297 -11.42229 -11.24275 -11.07997 -11.01100 -10.93024 -10.73487 -10.60764 -10.46137 -10.13553 -9.91259 -9.68064 -9.20870 -8.89003 -8.77777 -6.94380 -5.78450 -3.07114 2.20444 2.73569 3.43517 3.47675 3.48640 3.49816 3.73625 3.87872 4.15477 4.35162 4.43081 4.52387 4.57519 4.70321 4.75317 4.81438 4.98105 5.11658 5.13436 5.15502 5.20005 5.25661 5.33388 5.34040 5.38523 5.42650 5.47879 5.49106 5.53588 5.55872 5.63513 5.73399 5.75893 5.84029 5.89661 5.91638 5.94992 6.05753 6.19069 6.32052 6.38511 6.40778 6.62104 6.62818 6.73632 6.82924 7.23419 7.68396 7.86895 8.40610 9.51792 10.08707 10.43535 11.44410 Molecular weight = 329.22amu Principal moments of inertia in cm(-1) A = 0.032076 B = 0.001946 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.706291 B =14381.916733 C =14485.026529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 H 0.077 0.923 4 C 0.161 3.839 5 N -0.730 5.730 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.909 3.091 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.124 3.876 15 N -0.711 5.711 16 C 0.504 3.496 17 O -0.525 6.525 18 C 0.102 3.898 19 F -0.179 7.179 20 C -0.150 4.150 21 C 0.033 3.967 22 N -0.502 5.502 23 C 0.092 3.908 24 C -0.140 4.140 25 C -0.137 4.137 26 C -0.187 4.187 27 C 0.028 3.972 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.023 0.977 32 H 0.021 0.979 33 H 0.384 0.616 34 H 0.256 0.744 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.404 0.596 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.060 0.940 47 H 0.065 0.935 48 H 0.060 0.940 49 H 0.064 0.936 50 H 0.064 0.936 51 H 0.098 0.902 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.482 1.269 29.721 29.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.129 4.129 3 H 0.095 0.905 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.001 3.999 15 N -0.361 5.361 16 C 0.287 3.713 17 O -0.401 6.401 18 C 0.079 3.921 19 F -0.160 7.160 20 C -0.188 4.188 21 C -0.095 4.095 22 N -0.226 5.226 23 C 0.003 3.997 24 C -0.197 4.197 25 C -0.195 4.195 26 C -0.246 4.246 27 C -0.101 4.101 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.240 0.760 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.077 0.923 41 H 0.106 0.894 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.078 0.922 49 H 0.084 0.916 50 H 0.083 0.917 51 H 0.117 0.883 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.458 0.543 29.888 30.092 hybrid contribution 0.504 0.242 -1.454 1.558 sum 3.962 0.785 28.434 28.719 Atomic orbital electron populations 1.21803 0.94514 1.02069 1.01630 1.21559 0.96863 1.00484 0.94038 0.90462 1.20572 0.96576 0.94244 0.85352 1.42324 1.66832 1.27783 1.00570 1.19188 1.28602 1.05670 0.83668 0.91203 1.24743 1.00957 0.97434 0.97886 1.69645 1.43287 1.16715 1.28641 0.86246 0.78013 0.77707 0.84087 1.21252 1.21686 1.21278 1.21524 1.00283 0.95420 0.82683 1.46065 1.56398 1.27938 1.05736 1.20473 0.80553 0.85669 0.84617 1.90738 1.39763 1.23259 1.86354 1.21893 0.77907 0.97208 0.95045 1.92935 1.29479 1.96229 1.97315 1.23091 1.01764 0.95535 0.98444 1.22938 0.99388 0.95700 0.91464 1.65107 1.46162 1.03598 1.07716 1.21244 0.90548 0.96206 0.91739 1.21895 1.02293 0.96585 0.98975 1.21830 1.01197 0.97114 0.99363 1.22559 0.97909 1.02093 1.01994 1.23695 1.03106 0.94570 0.88684 0.93816 0.91032 0.92740 0.95953 0.96150 0.78185 0.93459 0.90998 0.91028 0.76047 0.89191 0.88424 0.92261 0.89397 0.91633 0.92032 0.92490 0.92480 0.92120 0.91639 0.92152 0.91647 0.91667 0.88336 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.94 37.16 0.33 -1.78 16 2 C -0.11 -1.66 2.46 -90.62 -0.22 -1.88 16 3 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 4 C 0.16 3.14 5.65 -4.04 -0.02 3.12 16 5 N -0.73 -18.14 5.33 -59.90 -0.32 -18.46 16 6 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 7 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 10 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 14 C 0.12 1.66 5.06 -4.04 -0.02 1.64 16 15 N -0.71 -8.25 5.28 -60.29 -0.32 -8.57 16 16 C 0.50 6.28 6.78 -10.99 -0.07 6.20 16 17 O -0.53 -8.09 15.72 5.55 0.09 -8.00 16 18 C 0.10 1.05 1.53 -89.91 -0.14 0.91 16 19 F -0.18 -2.10 16.96 2.25 0.04 -2.06 16 20 C -0.15 -1.18 6.31 -25.38 -0.16 -1.34 16 21 C 0.03 0.24 5.10 -2.75 -0.01 0.22 16 22 N -0.50 -4.23 5.09 -214.86 -1.09 -5.32 16 23 C 0.09 0.65 0.69 -131.60 -0.09 0.56 16 24 C -0.14 -0.81 8.27 37.16 0.31 -0.51 16 25 C -0.14 -0.92 8.48 37.16 0.32 -0.60 16 26 C -0.19 -1.28 7.59 37.16 0.28 -1.00 16 27 C 0.03 0.27 4.36 -1.90 -0.01 0.26 16 28 H 0.04 0.54 7.18 -51.93 -0.37 0.16 16 29 H 0.07 1.23 7.18 -51.93 -0.37 0.86 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.02 0.41 8.14 -51.92 -0.42 -0.02 16 33 H 0.38 9.92 6.85 -40.82 -0.28 9.64 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.40 4.01 7.65 -40.82 -0.31 3.70 16 38 H 0.09 0.68 7.84 -51.93 -0.41 0.27 16 39 H 0.10 0.67 8.12 -51.93 -0.42 0.25 16 40 H 0.06 0.39 5.29 -51.93 -0.27 0.12 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.06 0.32 6.77 -51.93 -0.35 -0.04 16 45 H 0.06 0.41 7.15 -51.93 -0.37 0.04 16 46 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.42 6.06 -51.93 -0.31 0.10 16 49 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.06 0.51 6.37 -51.93 -0.33 0.18 16 51 H 0.10 1.01 7.72 -51.93 -0.40 0.61 16 52 H 0.09 0.89 4.84 -51.93 -0.25 0.64 16 LS Contribution 401.90 15.07 6.06 6.06 Total: -1.00 -31.70 401.90 -8.69 -40.39 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -9.08 Total: 7.44 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 0.24 Total: -1.55 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: -1.01 Total: -59.63 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: 0.09 Total: -8.00 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.70 -8.69 -40.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753630495.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.356 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds