Wall clock time and date at job start Sat Apr 11 2020 02:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47194 * 2 1 4 4 C 1.53002 * 109.46654 * 240.00638 * 2 1 3 5 5 N 1.46503 * 109.47492 * 65.00270 * 4 2 1 6 6 C 1.36937 * 120.00050 * 179.72568 * 5 4 2 7 7 H 1.07998 * 119.99862 * 359.97438 * 6 5 4 8 8 C 1.38811 * 119.99914 * 179.97438 * 6 5 4 9 9 N 1.31625 * 120.00010 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 119.99959 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47243 * 59.99998 * 10 8 6 12 12 H 1.48501 * 109.47040 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47137 * 299.99860 * 10 8 6 14 14 C 1.52998 * 109.47273 * 120.00765 * 2 1 3 15 15 N 1.46502 * 109.46983 * 294.99910 * 14 2 1 16 16 C 1.34777 * 120.00168 * 180.02562 * 15 14 2 17 17 O 1.21285 * 119.99550 * 359.97438 * 16 15 14 18 18 C 1.50698 * 120.00227 * 179.97438 * 16 15 14 19 19 F 1.39895 * 110.64282 * 56.69591 * 18 16 15 20 20 C 1.54598 * 110.72391 * 293.54563 * 18 16 15 21 21 C 1.53985 * 105.14038 * 219.68265 * 20 18 16 22 22 N 1.47911 * 107.06023 * 358.77435 * 21 20 18 23 23 C 1.46893 * 110.99927 * 145.84005 * 22 21 20 24 24 C 1.53003 * 109.47245 * 55.22915 * 23 22 21 25 25 C 1.53002 * 109.47049 * 175.22663 * 23 22 21 26 26 C 1.52996 * 109.47763 * 295.22696 * 23 22 21 27 27 C 1.48540 * 105.81578 * 25.32974 * 22 21 20 28 28 H 1.08996 * 109.46682 * 299.99339 * 1 2 3 29 29 H 1.08996 * 109.47219 * 59.99355 * 1 2 3 30 30 H 1.08998 * 109.46830 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47645 * 304.99587 * 4 2 1 32 32 H 1.09014 * 109.46924 * 185.00033 * 4 2 1 33 33 H 0.96994 * 119.99548 * 359.97438 * 5 4 2 34 34 H 0.96990 * 119.99831 * 180.02562 * 9 8 6 35 35 H 1.09003 * 109.47178 * 54.99840 * 14 2 1 36 36 H 1.09004 * 109.47301 * 174.99810 * 14 2 1 37 37 H 0.97003 * 119.99884 * 0.02562 * 15 14 2 38 38 H 1.08999 * 110.30595 * 338.60155 * 20 18 16 39 39 H 1.09000 * 110.30534 * 100.76577 * 20 18 16 40 40 H 1.08996 * 109.91851 * 118.12599 * 21 20 18 41 41 H 1.09000 * 109.91790 * 239.42478 * 21 20 18 42 42 H 1.09002 * 109.46796 * 59.99460 * 24 23 22 43 43 H 1.08997 * 109.47450 * 179.97438 * 24 23 22 44 44 H 1.08994 * 109.47156 * 299.99854 * 24 23 22 45 45 H 1.09004 * 109.47196 * 60.00410 * 25 23 22 46 46 H 1.08997 * 109.47135 * 180.02562 * 25 23 22 47 47 H 1.09002 * 109.47087 * 300.00599 * 25 23 22 48 48 H 1.09006 * 109.47153 * 52.82985 * 26 23 22 49 49 H 1.08996 * 109.47852 * 172.82930 * 26 23 22 50 50 H 1.08999 * 109.47124 * 292.83645 * 26 23 22 51 51 H 1.08996 * 110.66397 * 202.35458 * 27 22 21 52 52 H 1.08996 * 110.66491 * 79.22980 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2494 5 7 1.6524 0.0356 -2.4425 6 6 2.0062 -0.4173 -3.6854 7 1 2.5714 -1.3321 -3.7861 8 6 1.6386 0.2995 -4.8159 9 7 0.9503 1.4147 -4.6931 10 14 2.1219 -0.3179 -6.5113 11 1 1.5356 -1.6641 -6.7336 12 1 1.6132 0.6208 -7.5434 13 1 3.6017 -0.4008 -6.6046 14 6 2.0401 -0.7214 1.2491 15 7 1.6525 0.0351 2.4424 16 6 1.9965 -0.4134 3.6659 17 8 2.6266 -1.4436 3.7790 18 6 1.5984 0.3650 4.8932 19 9 0.2116 0.5447 4.9350 20 6 2.3281 1.7272 4.9377 21 6 2.7037 1.9341 6.4167 22 7 2.1852 0.7674 7.1634 23 6 3.0771 0.4160 8.2764 24 6 3.2822 1.6398 9.1716 25 6 2.4505 -0.7150 9.0945 26 6 4.4275 -0.0428 7.7226 27 6 2.1026 -0.3403 6.1773 28 1 -0.3632 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6054 -1.7197 -1.2954 32 1 3.1264 -0.7994 -1.2058 33 1 1.1483 0.8593 -2.3517 34 1 0.6931 1.9153 -5.4830 35 1 1.6054 -1.7200 1.2949 36 1 3.1264 -0.7996 1.2054 37 1 1.1483 0.8588 2.3518 38 1 3.2258 1.6958 4.3202 39 1 1.6641 2.5232 4.6010 40 1 3.7873 1.9895 6.5203 41 1 2.2448 2.8489 6.7918 42 1 2.3201 1.9666 9.5661 43 1 3.9437 1.3789 9.9977 44 1 3.7285 2.4455 8.5888 45 1 2.3044 -1.5869 8.4568 46 1 3.1121 -0.9754 9.9206 47 1 1.4884 -0.3881 9.4890 48 1 4.8147 0.7118 7.0379 49 1 5.1293 -0.1815 8.5449 50 1 4.3006 -0.9855 7.1904 51 1 1.3895 -1.0960 6.5065 52 1 3.0850 -0.7828 6.0127 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753630495.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:26:18 Heat of formation + Delta-G solvation = -96.339877 kcal Electronic energy + Delta-G solvation = -29179.216342 eV Core-core repulsion = 25127.249492 eV Total energy + Delta-G solvation = -4051.966850 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.222 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.95496 -41.30540 -40.25047 -38.30280 -36.05905 -35.80749 -34.17662 -32.00934 -30.58148 -30.54149 -28.31863 -28.02946 -27.70744 -27.06718 -24.75157 -23.52739 -22.98320 -21.62854 -20.97567 -19.98385 -19.25910 -18.65085 -17.86721 -17.25708 -16.97996 -16.50711 -16.32487 -16.06430 -15.90614 -15.67345 -15.45036 -15.27885 -15.04341 -14.88716 -14.79889 -14.45302 -14.18476 -13.83798 -13.68032 -13.64494 -13.59536 -13.08134 -12.96813 -12.87331 -12.83154 -12.77747 -12.51696 -12.33588 -12.23846 -12.22643 -12.13803 -12.02312 -11.97949 -11.94441 -11.73589 -11.67259 -11.54170 -10.94895 -10.92801 -10.26637 -9.40073 -8.99658 -7.95450 -5.23812 1.21446 1.47606 1.50283 1.56400 1.77956 2.56140 2.80804 3.01465 3.17226 3.32041 3.38028 3.63798 3.67987 3.87867 3.92845 3.98902 4.03867 4.07551 4.14421 4.22402 4.32892 4.49684 4.51442 4.59911 4.62494 4.65514 4.67076 4.71772 4.77198 4.80932 4.88852 4.90241 4.91405 4.96980 4.98827 5.01524 5.06292 5.10560 5.20187 5.22653 5.32291 5.34820 5.42608 5.44317 5.49607 5.79489 6.04324 6.25778 6.28281 6.90000 7.33945 8.09143 8.33213 9.27679 Molecular weight = 329.22amu Principal moments of inertia in cm(-1) A = 0.032076 B = 0.001946 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.706291 B =14381.916733 C =14485.026529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 H 0.081 0.919 4 C 0.157 3.843 5 N -0.741 5.741 6 C -0.248 4.248 7 H 0.074 0.926 8 C -0.075 4.075 9 N -0.967 5.967 10 Si 0.973 3.027 11 H -0.279 1.279 12 H -0.294 1.294 13 H -0.278 1.278 14 C 0.136 3.864 15 N -0.702 5.702 16 C 0.505 3.495 17 O -0.557 6.557 18 C 0.102 3.898 19 F -0.187 7.187 20 C -0.145 4.145 21 C 0.032 3.968 22 N -0.508 5.508 23 C 0.088 3.912 24 C -0.136 4.136 25 C -0.136 4.136 26 C -0.183 4.183 27 C 0.031 3.969 28 H 0.072 0.928 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.021 0.979 32 H 0.022 0.978 33 H 0.377 0.623 34 H 0.252 0.748 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.415 0.585 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.068 0.932 41 H 0.098 0.902 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.046 0.954 46 H 0.073 0.927 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.076 0.924 50 H 0.051 0.949 51 H 0.088 0.912 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.139 1.745 30.935 31.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 H 0.100 0.900 4 C 0.030 3.970 5 N -0.385 5.385 6 C -0.380 4.380 7 H 0.092 0.908 8 C -0.267 4.267 9 N -0.618 5.618 10 Si 0.802 3.198 11 H -0.205 1.205 12 H -0.221 1.221 13 H -0.204 1.204 14 C 0.012 3.988 15 N -0.353 5.353 16 C 0.289 3.711 17 O -0.436 6.436 18 C 0.080 3.920 19 F -0.167 7.167 20 C -0.184 4.184 21 C -0.095 4.095 22 N -0.233 5.233 23 C -0.001 4.001 24 C -0.193 4.193 25 C -0.194 4.194 26 C -0.242 4.242 27 C -0.098 4.098 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.209 0.791 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.252 0.748 38 H 0.113 0.887 39 H 0.130 0.870 40 H 0.086 0.914 41 H 0.117 0.883 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.092 0.908 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.095 0.905 50 H 0.070 0.930 51 H 0.106 0.894 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.118 1.013 31.132 31.420 hybrid contribution 0.308 0.043 -1.757 1.784 sum 4.427 1.055 29.375 29.726 Atomic orbital electron populations 1.21738 0.94113 1.01932 1.01684 1.21334 0.96977 1.00227 0.92740 0.90025 1.20725 0.96653 0.94103 0.85541 1.42497 1.66709 1.27924 1.01343 1.19589 1.27755 1.05541 0.85072 0.90826 1.25551 1.01675 0.97942 1.01535 1.69795 1.44819 1.17969 1.29199 0.85218 0.77895 0.77140 0.79535 1.20532 1.22062 1.20441 1.21258 1.00054 0.95033 0.82474 1.45935 1.56180 1.28084 1.05078 1.20839 0.79826 0.85274 0.85192 1.90725 1.41280 1.24712 1.86843 1.21914 0.77633 0.98455 0.93977 1.92920 1.30203 1.96312 1.97271 1.23135 1.01881 0.94208 0.99135 1.23013 1.00067 0.95558 0.90876 1.65130 1.47059 1.03360 1.07718 1.21348 0.90330 0.96901 0.91502 1.21866 1.02396 0.95999 0.99060 1.21826 1.01323 0.96681 0.99556 1.22519 0.98083 1.01337 1.02232 1.23590 1.02390 0.94889 0.88899 0.90945 0.93713 0.92981 0.96104 0.95970 0.79075 0.93960 0.91520 0.91161 0.74797 0.88696 0.87041 0.91365 0.88333 0.92016 0.90895 0.92013 0.93535 0.90805 0.92075 0.92140 0.90506 0.93043 0.89390 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 8.94 71.98 0.64 -3.28 16 2 C -0.09 -2.73 2.46 -10.79 -0.03 -2.75 16 3 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 4 C 0.16 6.07 5.65 86.38 0.49 6.55 16 5 N -0.74 -36.95 5.33 -343.43 -1.83 -38.79 16 6 C -0.25 -13.80 9.99 84.03 0.84 -12.96 16 7 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 8 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 9 N -0.97 -58.55 13.06 21.65 0.28 -58.27 16 10 Si 0.97 46.00 29.55 68.60 2.03 48.03 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 13 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 14 C 0.14 3.46 5.06 86.38 0.44 3.89 16 15 N -0.70 -15.20 5.28 -463.05 -2.45 -17.64 16 16 C 0.51 12.06 6.78 87.66 0.59 12.66 16 17 O -0.56 -16.99 15.72 -3.04 -0.05 -17.04 16 18 C 0.10 1.99 1.53 -10.34 -0.02 1.97 16 19 F -0.19 -4.12 16.96 44.97 0.76 -3.36 16 20 C -0.15 -1.99 6.31 31.47 0.20 -1.79 16 21 C 0.03 0.40 5.10 86.44 0.44 0.84 16 22 N -0.51 -7.92 5.09 -833.67 -4.24 -12.17 16 23 C 0.09 1.12 0.69 3.53 0.00 1.12 16 24 C -0.14 -1.30 8.27 71.98 0.60 -0.71 16 25 C -0.14 -1.71 8.48 71.98 0.61 -1.10 16 26 C -0.18 -2.28 7.59 71.98 0.55 -1.73 16 27 C 0.03 0.59 4.36 86.65 0.38 0.97 16 28 H 0.07 1.64 7.18 -2.39 -0.02 1.62 16 29 H 0.04 1.53 7.18 -2.39 -0.02 1.52 16 30 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.02 0.82 8.14 -2.39 -0.02 0.81 16 32 H 0.02 0.86 8.14 -2.38 -0.02 0.85 16 33 H 0.38 19.69 6.85 -92.71 -0.63 19.05 16 34 H 0.25 14.80 8.31 -92.72 -0.77 14.03 16 35 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.41 7.31 7.65 -92.71 -0.71 6.60 16 38 H 0.09 1.22 7.84 -2.39 -0.02 1.20 16 39 H 0.11 1.23 8.12 -2.39 -0.02 1.21 16 40 H 0.07 0.74 5.29 -2.39 -0.01 0.73 16 41 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.06 0.54 6.77 -2.39 -0.02 0.52 16 45 H 0.05 0.67 7.15 -2.39 -0.02 0.65 16 46 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.06 0.74 6.06 -2.38 -0.01 0.73 16 49 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.05 0.78 6.37 -2.39 -0.02 0.77 16 51 H 0.09 1.83 7.72 -2.39 -0.02 1.81 16 52 H 0.08 1.63 4.84 -2.39 -0.01 1.62 16 Total: -1.00 -67.43 401.90 0.27 -67.16 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: -0.43 Total: 32.18 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 6.20 Total: -0.11 kcal Atomic # 7 Polarization: -118.63 SS G_CDS: -8.24 Total: -126.86 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.05 Total: -17.04 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.76 Total: -3.36 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -67.43 0.27 -67.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753630495.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.182 kcal (2) G-P(sol) polarization free energy of solvation -67.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds