Wall clock time and date at job start Sat Apr 11 2020 02:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46354 * 2 1 4 4 C 1.52991 * 109.46867 * 239.99659 * 2 1 3 5 5 N 1.46497 * 109.47461 * 65.00244 * 4 2 1 6 6 C 1.36936 * 120.00121 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00014 * 359.97438 * 6 5 4 8 8 C 1.38817 * 119.99869 * 179.97438 * 6 5 4 9 9 N 1.31621 * 120.00005 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00037 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47181 * 90.00129 * 10 8 6 12 12 H 1.48502 * 109.47098 * 210.00254 * 10 8 6 13 13 H 1.48501 * 109.47017 * 330.00298 * 10 8 6 14 14 C 1.53000 * 109.47147 * 119.99347 * 2 1 3 15 15 N 1.46506 * 109.47353 * 295.00369 * 14 2 1 16 16 C 1.34773 * 119.99804 * 179.97438 * 15 14 2 17 17 O 1.21280 * 120.00387 * 0.02562 * 16 15 14 18 18 C 1.50698 * 119.99551 * 180.27236 * 16 15 14 19 19 F 1.39900 * 110.63085 * 312.83158 * 18 16 15 20 20 C 1.55141 * 110.70535 * 76.13195 * 18 16 15 21 21 C 1.54910 * 101.65424 * 154.03528 * 20 18 16 22 22 N 1.47848 * 104.79452 * 322.92571 * 21 20 18 23 23 C 1.46900 * 111.00052 * 146.36630 * 22 21 20 24 24 C 1.53005 * 109.46959 * 298.07783 * 23 22 21 25 25 C 1.53001 * 109.47239 * 58.07238 * 23 22 21 26 26 C 1.52998 * 109.47202 * 178.07627 * 23 22 21 27 27 C 1.47446 * 108.56438 * 24.09884 * 22 21 20 28 28 H 1.09006 * 109.46664 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47232 * 300.00248 * 1 2 3 30 30 H 1.08990 * 109.47116 * 60.00335 * 1 2 3 31 31 H 1.09005 * 109.46589 * 184.99883 * 4 2 1 32 32 H 1.08994 * 109.47521 * 304.99625 * 4 2 1 33 33 H 0.97001 * 119.99499 * 359.97438 * 5 4 2 34 34 H 0.96999 * 119.99832 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.47104 * 175.00076 * 14 2 1 36 36 H 1.09003 * 109.46910 * 54.99826 * 14 2 1 37 37 H 0.96994 * 119.99740 * 359.97438 * 15 14 2 38 38 H 1.08994 * 110.98810 * 272.12286 * 20 18 16 39 39 H 1.08995 * 110.99195 * 35.94134 * 20 18 16 40 40 H 1.08999 * 110.37360 * 204.10072 * 21 20 18 41 41 H 1.08996 * 110.37643 * 81.75762 * 21 20 18 42 42 H 1.08996 * 109.47459 * 66.00788 * 24 23 22 43 43 H 1.08994 * 109.46970 * 186.01344 * 24 23 22 44 44 H 1.09004 * 109.46656 * 306.00902 * 24 23 22 45 45 H 1.09002 * 109.46478 * 59.99943 * 25 23 22 46 46 H 1.08998 * 109.47375 * 180.02562 * 25 23 22 47 47 H 1.09001 * 109.46901 * 300.00492 * 25 23 22 48 48 H 1.09004 * 109.46874 * 60.00175 * 26 23 22 49 49 H 1.08998 * 109.47060 * 180.02562 * 26 23 22 50 50 H 1.08997 * 109.46841 * 299.99664 * 26 23 22 51 51 H 1.09000 * 109.88651 * 239.59703 * 27 22 21 52 52 H 1.09001 * 110.02188 * 118.49629 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 1.6525 0.0352 -2.4423 6 6 2.0011 -0.4211 -3.6855 7 1 2.5620 -1.3384 -3.7863 8 6 1.6334 0.2955 -4.8161 9 7 1.9689 -0.1427 -6.0110 10 14 0.6625 1.8819 -4.6417 11 1 1.6013 3.0265 -4.5254 12 1 -0.1998 2.0683 -5.8363 13 1 -0.1857 1.8118 -3.4249 14 6 2.0401 -0.7211 1.2493 15 7 1.6525 0.0356 2.4425 16 6 1.9956 -0.4133 3.6660 17 8 2.6257 -1.4434 3.7794 18 6 1.5916 0.3618 4.8936 19 9 1.8785 1.7218 4.7344 20 6 0.0873 0.1477 5.2071 21 6 0.0465 0.4034 6.7344 22 7 1.3086 -0.1712 7.2472 23 6 1.8154 0.6047 8.3870 24 6 2.1213 2.0342 7.9351 25 6 0.7592 0.6348 9.4936 26 6 3.0935 -0.0464 8.9193 27 6 2.2917 -0.2002 6.1487 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 3.1264 -0.7995 -1.2054 32 1 1.6055 -1.7198 -1.2950 33 1 1.1483 0.8589 -2.3517 34 1 1.7116 0.3578 -6.8010 35 1 3.1264 -0.7993 1.2057 36 1 1.6054 -1.7197 1.2953 37 1 1.1489 0.8596 2.3517 38 1 -0.5295 0.8708 4.6736 39 1 -0.2189 -0.8720 4.9736 40 1 -0.8096 -0.1022 7.1810 41 1 0.0058 1.4731 6.9391 42 1 1.1935 2.5335 7.6561 43 1 2.5963 2.5792 8.7507 44 1 2.7922 2.0080 7.0764 45 1 0.5413 -0.3836 9.8154 46 1 1.1351 1.2109 10.3391 47 1 -0.1513 1.0987 9.1142 48 1 3.8459 -0.0677 8.1309 49 1 3.4693 0.5291 9.7652 50 1 2.8755 -1.0647 9.2412 51 1 2.6135 -1.2255 5.9661 52 1 3.1524 0.4188 6.4018 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753630500.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:26:22 Heat of formation + Delta-G solvation = -93.758784 kcal Electronic energy + Delta-G solvation = -29364.566136 eV Core-core repulsion = 25312.711211 eV Total energy + Delta-G solvation = -4051.854926 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.222 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.10445 -41.26972 -40.26894 -38.40985 -36.15829 -35.74006 -34.22536 -32.47289 -30.67694 -30.54501 -28.26120 -28.04012 -27.81403 -27.16953 -24.48506 -23.41438 -22.96858 -21.72373 -21.11458 -19.79992 -19.75803 -18.98542 -17.88440 -17.24829 -16.91759 -16.62883 -16.34950 -16.16362 -16.05388 -15.63944 -15.45545 -15.29089 -15.05718 -14.90198 -14.84390 -14.24229 -14.12334 -13.97658 -13.85186 -13.65535 -13.40271 -13.24772 -13.13464 -12.98567 -12.88911 -12.76084 -12.64453 -12.30519 -12.28405 -12.20596 -12.18971 -12.12670 -12.00865 -11.83296 -11.77064 -11.70573 -11.50127 -10.99652 -10.97388 -10.26651 -9.32207 -9.31122 -8.03392 -5.37606 1.23112 1.36610 1.41711 1.48921 1.79906 2.48028 2.76536 3.01190 3.11929 3.27623 3.28477 3.51041 3.64165 3.86902 3.90199 3.95901 3.98894 4.04286 4.09397 4.19618 4.23112 4.43044 4.48336 4.62518 4.64704 4.66630 4.71631 4.73537 4.80940 4.85940 4.87664 4.90351 4.92759 4.94418 4.98884 5.00782 5.05204 5.07771 5.19421 5.24060 5.29718 5.32881 5.42397 5.43247 5.74649 5.87535 6.08400 6.20054 6.27839 6.92199 7.06983 7.81912 8.02415 9.18091 Molecular weight = 329.22amu Principal moments of inertia in cm(-1) A = 0.031068 B = 0.002093 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.043487 B =13374.964764 C =13679.055677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.085 0.915 4 C 0.159 3.841 5 N -0.754 5.754 6 C -0.238 4.238 7 H 0.054 0.946 8 C -0.067 4.067 9 N -0.984 5.984 10 Si 0.958 3.042 11 H -0.278 1.278 12 H -0.296 1.296 13 H -0.246 1.246 14 C 0.134 3.866 15 N -0.702 5.702 16 C 0.507 3.493 17 O -0.556 6.556 18 C 0.083 3.917 19 F -0.189 7.189 20 C -0.136 4.136 21 C 0.038 3.962 22 N -0.517 5.517 23 C 0.089 3.911 24 C -0.181 4.181 25 C -0.134 4.134 26 C -0.140 4.140 27 C 0.034 3.966 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.024 0.976 32 H 0.027 0.973 33 H 0.368 0.632 34 H 0.258 0.742 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.415 0.585 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.072 0.928 44 H 0.048 0.952 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.061 0.939 48 H 0.046 0.954 49 H 0.073 0.927 50 H 0.060 0.940 51 H 0.095 0.905 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.021 5.943 36.162 37.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.104 0.896 4 C 0.032 3.968 5 N -0.400 5.400 6 C -0.369 4.369 7 H 0.072 0.928 8 C -0.258 4.258 9 N -0.635 5.635 10 Si 0.785 3.215 11 H -0.204 1.204 12 H -0.223 1.223 13 H -0.170 1.170 14 C 0.010 3.990 15 N -0.354 5.354 16 C 0.290 3.710 17 O -0.434 6.434 18 C 0.061 3.939 19 F -0.170 7.170 20 C -0.174 4.174 21 C -0.089 4.089 22 N -0.241 5.241 23 C 0.000 4.000 24 C -0.239 4.239 25 C -0.191 4.191 26 C -0.198 4.198 27 C -0.094 4.094 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.066 0.934 31 H 0.042 0.958 32 H 0.045 0.955 33 H 0.202 0.798 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.252 0.748 38 H 0.132 0.868 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.080 0.920 48 H 0.065 0.935 49 H 0.092 0.908 50 H 0.079 0.921 51 H 0.113 0.887 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.554 4.579 36.291 36.998 hybrid contribution -0.064 1.855 -1.306 2.269 sum -5.618 6.434 34.985 36.012 Atomic orbital electron populations 1.21811 0.93466 1.02524 1.02100 1.21400 0.97534 1.00365 0.92497 0.89637 1.20703 0.96996 0.94272 0.84804 1.42625 1.67622 1.27879 1.01893 1.19033 1.28057 1.05759 0.84003 0.92839 1.25585 1.02691 1.02998 0.94575 1.69899 1.53343 1.42295 0.97946 0.85364 0.78821 0.79570 0.77747 1.20416 1.22288 1.16997 1.21245 0.99918 0.95268 0.82532 1.45886 1.56608 1.27867 1.05007 1.20743 0.79251 0.85823 0.85137 1.90733 1.40387 1.25738 1.86542 1.22315 1.00402 0.76688 0.94514 1.92911 1.94822 1.32682 1.96575 1.23365 0.90647 1.05398 0.98032 1.23235 0.93448 0.99816 0.92360 1.64018 1.03103 1.51101 1.05847 1.21381 0.96121 0.91088 0.91408 1.22528 1.02035 0.97358 1.01978 1.21829 0.97642 1.02595 0.97066 1.21902 0.95565 1.01319 1.00972 1.23304 0.95687 1.03051 0.87389 0.92470 0.90302 0.93404 0.95808 0.95502 0.79797 0.93318 0.91835 0.90982 0.74772 0.86761 0.88348 0.87887 0.91415 0.91945 0.90950 0.93292 0.92026 0.91058 0.92031 0.93474 0.90802 0.92066 0.88687 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.94 71.98 0.64 -2.64 16 2 C -0.10 -2.55 2.46 -10.79 -0.03 -2.57 16 3 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 4 C 0.16 5.81 5.65 86.38 0.49 6.29 16 5 N -0.75 -34.40 5.13 -343.47 -1.76 -36.17 16 6 C -0.24 -13.61 10.47 84.03 0.88 -12.73 16 7 H 0.05 3.39 8.06 -2.91 -0.02 3.36 16 8 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 9 N -0.98 -63.41 13.97 21.65 0.30 -63.11 16 10 Si 0.96 44.70 27.74 68.60 1.90 46.60 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 13 H -0.25 -10.05 6.52 99.48 0.65 -9.40 16 14 C 0.13 3.17 5.07 86.38 0.44 3.61 16 15 N -0.70 -13.78 5.26 -463.05 -2.43 -16.21 16 16 C 0.51 11.36 6.89 87.66 0.60 11.96 16 17 O -0.56 -16.58 15.42 -3.03 -0.05 -16.63 16 18 C 0.08 1.44 1.42 -10.36 -0.01 1.42 16 19 F -0.19 -3.40 16.29 44.97 0.73 -2.66 16 20 C -0.14 -1.63 6.32 31.98 0.20 -1.43 16 21 C 0.04 0.42 5.14 86.77 0.45 0.87 16 22 N -0.52 -7.51 5.00 -836.13 -4.18 -11.69 16 23 C 0.09 1.07 0.67 3.53 0.00 1.07 16 24 C -0.18 -2.13 7.88 71.98 0.57 -1.56 16 25 C -0.13 -1.20 8.34 71.98 0.60 -0.60 16 26 C -0.14 -1.70 8.36 71.98 0.60 -1.10 16 27 C 0.03 0.62 4.81 86.65 0.42 1.04 16 28 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.08 1.29 7.18 -2.39 -0.02 1.27 16 30 H 0.05 1.30 7.18 -2.39 -0.02 1.28 16 31 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.37 15.67 4.71 -92.71 -0.44 15.23 16 34 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 35 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.42 6.21 7.59 -92.71 -0.70 5.51 16 38 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.10 1.26 8.04 -2.39 -0.02 1.24 16 40 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 0.68 5.48 -2.39 -0.01 0.67 16 42 H 0.06 0.70 6.31 -2.39 -0.02 0.69 16 43 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.05 0.73 5.54 -2.38 -0.01 0.71 16 45 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.06 0.49 6.97 -2.39 -0.02 0.47 16 48 H 0.05 0.66 6.57 -2.39 -0.02 0.64 16 49 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.10 2.14 6.72 -2.39 -0.02 2.12 16 52 H 0.08 1.40 4.77 -2.39 -0.01 1.38 16 Total: -1.00 -71.63 396.72 0.55 -71.08 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: -0.28 Total: 28.64 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 6.32 Total: 0.14 kcal Atomic # 7 Polarization: -119.10 SS G_CDS: -8.07 Total: -127.17 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.05 Total: -16.63 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.73 Total: -2.66 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.90 Total: 46.60 kcal Total: -71.63 0.55 -71.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753630500.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.676 kcal (2) G-P(sol) polarization free energy of solvation -71.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds