Wall clock time and date at job start Sat Apr 11 2020 02:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47642 * 2 1 4 4 C 1.53008 * 109.46592 * 119.99733 * 2 1 3 5 5 N 1.46501 * 109.46952 * 294.99733 * 4 2 1 6 6 C 1.36935 * 119.99783 * 180.02562 * 5 4 2 7 7 H 1.08003 * 120.00310 * 0.02562 * 6 5 4 8 8 C 1.38808 * 119.99959 * 180.02562 * 6 5 4 9 9 N 1.31614 * 120.00293 * 180.02562 * 8 6 5 10 10 Si 1.86807 * 120.00073 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46610 * 90.00234 * 10 8 6 12 12 H 1.48496 * 109.47349 * 210.00271 * 10 8 6 13 13 H 1.48501 * 109.46994 * 330.00723 * 10 8 6 14 14 C 1.53002 * 109.47001 * 239.99275 * 2 1 3 15 15 N 1.46497 * 109.47107 * 65.00637 * 14 2 1 16 16 C 1.34771 * 120.00179 * 179.97438 * 15 14 2 17 17 O 1.21286 * 120.00091 * 359.97438 * 16 15 14 18 18 C 1.50702 * 120.00407 * 179.97438 * 16 15 14 19 19 F 1.39894 * 110.77957 * 308.20939 * 18 16 15 20 20 C 1.54594 * 110.72146 * 71.45696 * 18 16 15 21 21 C 1.53989 * 105.14142 * 140.32064 * 20 18 16 22 22 N 1.47907 * 107.22446 * 1.12125 * 21 20 18 23 23 C 1.46896 * 110.99981 * 214.25566 * 22 21 20 24 24 C 1.53009 * 109.47022 * 64.64432 * 23 22 21 25 25 C 1.52998 * 109.46877 * 184.63884 * 23 22 21 26 26 C 1.53001 * 109.47465 * 304.64516 * 23 22 21 27 27 C 1.48811 * 105.67819 * 334.90946 * 22 21 20 28 28 H 1.08993 * 109.47492 * 300.00627 * 1 2 3 29 29 H 1.09005 * 109.46776 * 60.00481 * 1 2 3 30 30 H 1.08996 * 109.47642 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46951 * 54.99879 * 4 2 1 32 32 H 1.09000 * 109.46907 * 174.99841 * 4 2 1 33 33 H 0.96997 * 120.00127 * 359.97438 * 5 4 2 34 34 H 0.96997 * 120.00520 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47209 * 304.99931 * 14 2 1 36 36 H 1.09009 * 109.46743 * 185.00392 * 14 2 1 37 37 H 0.97002 * 119.99691 * 359.97438 * 15 14 2 38 38 H 1.09001 * 110.31246 * 21.39815 * 20 18 16 39 39 H 1.09009 * 110.38972 * 259.27569 * 20 18 16 40 40 H 1.08997 * 109.92100 * 120.57565 * 21 20 18 41 41 H 1.09003 * 109.91487 * 241.67187 * 21 20 18 42 42 H 1.08999 * 109.47075 * 67.03667 * 24 23 22 43 43 H 1.09001 * 109.47138 * 187.04030 * 24 23 22 44 44 H 1.09005 * 109.46986 * 307.03748 * 24 23 22 45 45 H 1.08998 * 109.46939 * 60.00892 * 25 23 22 46 46 H 1.09005 * 109.46537 * 180.02562 * 25 23 22 47 47 H 1.09001 * 109.47546 * 300.00171 * 25 23 22 48 48 H 1.08993 * 109.47088 * 59.99667 * 26 23 22 49 49 H 1.09001 * 109.46943 * 179.97438 * 26 23 22 50 50 H 1.09005 * 109.46877 * 299.99696 * 26 23 22 51 51 H 1.09002 * 110.51610 * 280.54391 * 27 22 21 52 52 H 1.08995 * 110.84143 * 157.55863 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2494 5 7 1.6523 0.0355 2.4424 6 6 2.0017 -0.4201 3.6856 7 1 2.5634 -1.3370 3.7866 8 6 1.6340 0.2966 4.8161 9 7 1.9703 -0.1409 6.0109 10 14 0.6632 1.8830 4.6414 11 1 -0.7902 1.5790 4.6654 12 1 0.9969 2.7940 5.7657 13 1 1.0109 2.5370 3.3543 14 6 2.0400 -0.7214 -1.2492 15 7 1.6525 0.0351 -2.4424 16 6 1.9965 -0.4134 -3.6658 17 8 2.6272 -1.4432 -3.7790 18 6 1.5975 0.3645 -4.8933 19 9 0.2261 0.6407 -4.8818 20 6 2.4177 1.6702 -5.0041 21 6 2.7382 1.8180 -6.5030 22 7 2.1092 0.6752 -7.2001 23 6 2.9261 0.2400 -8.3407 24 6 4.2658 -0.2972 -7.8331 25 6 2.1903 -0.8635 -9.1035 26 6 3.1732 1.4273 -9.2736 27 6 1.9915 -0.4024 -6.1806 28 1 -0.3634 0.5139 0.8898 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6052 -1.7197 1.2953 32 1 3.1262 -0.7995 1.2058 33 1 1.1488 0.8596 2.3517 34 1 1.7137 0.3601 6.8009 35 1 1.6053 -1.7200 -1.2950 36 1 3.1264 -0.7997 -1.2054 37 1 1.1484 0.8589 -2.3518 38 1 3.3385 1.5887 -4.4265 39 1 1.8285 2.5194 -4.6577 40 1 2.3275 2.7546 -6.8800 41 1 3.8173 1.7978 -6.6557 42 1 4.0993 -1.2160 -7.2709 43 1 4.9194 -0.5031 -8.6807 44 1 4.7332 0.4451 -7.1859 45 1 1.2359 -0.4808 -9.4652 46 1 2.7968 -1.1866 -9.9496 47 1 2.0143 -1.7093 -8.4389 48 1 3.6974 2.2134 -8.7302 49 1 3.7798 1.1044 -10.1197 50 1 2.2188 1.8100 -9.6353 51 1 2.9473 -0.9097 -6.0488 52 1 1.2142 -1.1147 -6.4571 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753630502.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:26:26 Heat of formation + Delta-G solvation = -70.581115 kcal Electronic energy + Delta-G solvation = -29252.589498 eV Core-core repulsion = 25201.739631 eV Total energy + Delta-G solvation = -4050.849866 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.222 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.13871 -40.51244 -39.46882 -37.10891 -35.19827 -34.63177 -32.60409 -30.69708 -29.98307 -29.81819 -27.81552 -27.43339 -26.73301 -25.70644 -23.28269 -22.46991 -21.81244 -20.62066 -20.00864 -19.34151 -18.16473 -17.42234 -17.11576 -16.29385 -16.11342 -15.51260 -15.28232 -15.17941 -14.93205 -14.52914 -14.40403 -14.24392 -14.23078 -13.93221 -13.67070 -13.28192 -13.21824 -12.99043 -12.69855 -12.55746 -12.51628 -12.35687 -12.25208 -12.22997 -11.99186 -11.82069 -11.57460 -11.48759 -11.45424 -11.28830 -11.09326 -11.04199 -10.82016 -10.67774 -10.64012 -10.16853 -9.97158 -9.60684 -9.28710 -8.92957 -8.81264 -7.26334 -5.78993 -3.14949 2.13905 2.66473 3.33949 3.36365 3.42514 3.44927 3.69134 3.82990 4.08938 4.29988 4.39727 4.48949 4.56211 4.66010 4.71414 4.75769 4.79780 5.02262 5.08441 5.10105 5.16662 5.18211 5.20765 5.30276 5.34950 5.39044 5.44415 5.45673 5.49353 5.50906 5.58809 5.61328 5.68693 5.70572 5.77634 5.80426 5.81378 5.92034 6.02399 6.16436 6.24639 6.36149 6.41555 6.58689 6.60387 6.70114 7.15615 7.79976 7.96940 8.39743 9.18453 9.90531 10.10053 11.39359 Molecular weight = 329.22amu Principal moments of inertia in cm(-1) A = 0.029770 B = 0.002079 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.326087 B =13464.175853 C =13690.448943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 H 0.076 0.924 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.245 4.245 7 H 0.091 0.909 8 C 0.004 3.996 9 N -0.933 5.933 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.125 3.875 15 N -0.712 5.712 16 C 0.505 3.495 17 O -0.523 6.523 18 C 0.102 3.898 19 F -0.180 7.180 20 C -0.148 4.148 21 C 0.033 3.967 22 N -0.501 5.501 23 C 0.093 3.907 24 C -0.187 4.187 25 C -0.137 4.137 26 C -0.140 4.140 27 C 0.027 3.973 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.032 0.968 32 H 0.029 0.971 33 H 0.361 0.639 34 H 0.260 0.740 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.404 0.596 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.056 0.944 48 H 0.056 0.944 49 H 0.061 0.939 50 H 0.065 0.935 51 H 0.088 0.912 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.093 4.175 -33.173 33.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.134 4.134 3 H 0.095 0.905 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.374 4.374 7 H 0.108 0.892 8 C -0.192 4.192 9 N -0.581 5.581 10 Si 0.715 3.285 11 H -0.210 1.210 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.001 3.999 15 N -0.363 5.363 16 C 0.288 3.712 17 O -0.399 6.399 18 C 0.079 3.921 19 F -0.160 7.160 20 C -0.187 4.187 21 C -0.095 4.095 22 N -0.226 5.226 23 C 0.003 3.997 24 C -0.246 4.246 25 C -0.195 4.195 26 C -0.197 4.197 27 C -0.102 4.102 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.194 0.806 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.239 0.761 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.080 0.920 50 H 0.084 0.916 51 H 0.106 0.894 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.109 3.426 -33.277 33.471 hybrid contribution -0.257 1.395 0.534 1.516 sum 0.852 4.821 -32.743 33.107 Atomic orbital electron populations 1.21824 0.94615 1.02412 1.01356 1.21615 0.96783 1.00555 0.94443 0.90514 1.20548 0.97182 0.94271 0.84263 1.42679 1.67924 1.27067 1.02330 1.19057 1.29572 1.07112 0.81702 0.89167 1.24680 1.00787 0.98629 0.95108 1.69696 1.51208 1.40292 0.96931 0.86549 0.80476 0.84599 0.76887 1.21026 1.21697 1.20419 1.21500 1.00464 0.95437 0.82468 1.46047 1.56538 1.27943 1.05757 1.20459 0.80546 0.85650 0.84584 1.90746 1.39678 1.23210 1.86304 1.21894 0.78282 0.96851 0.95051 1.92932 1.31070 1.94671 1.97372 1.23069 1.01039 0.96317 0.98249 1.22930 0.98756 0.96126 0.91700 1.65149 1.45980 1.04977 1.06459 1.21245 0.91219 0.95799 0.91433 1.22562 0.97942 1.01908 1.02148 1.21829 1.00688 0.97309 0.99683 1.21895 1.02205 0.96959 0.98688 1.23745 1.03766 0.94483 0.88162 0.91748 0.93525 0.92256 0.95046 0.95272 0.80615 0.93033 0.90788 0.90818 0.76087 0.89218 0.88489 0.89441 0.92253 0.91651 0.91630 0.92156 0.91634 0.92092 0.92489 0.92508 0.92001 0.91628 0.89426 0.88351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.94 37.16 0.33 -1.61 16 2 C -0.11 -1.60 2.46 -90.62 -0.22 -1.82 16 3 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.17 3.05 5.65 -4.04 -0.02 3.03 16 5 N -0.75 -17.50 5.13 -59.91 -0.31 -17.80 16 6 C -0.24 -6.89 10.47 -15.06 -0.16 -7.05 16 7 H 0.09 2.73 8.06 -52.48 -0.42 2.30 16 8 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 9 N -0.93 -29.28 13.97 55.49 0.78 -28.50 16 10 Si 0.88 21.86 27.74 -169.99 -4.71 17.14 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 14 C 0.12 1.55 5.06 -4.04 -0.02 1.53 16 15 N -0.71 -7.73 5.28 -60.29 -0.32 -8.05 16 16 C 0.51 5.97 6.78 -10.99 -0.07 5.89 16 17 O -0.52 -7.75 15.69 5.55 0.09 -7.66 16 18 C 0.10 0.99 1.53 -89.91 -0.14 0.85 16 19 F -0.18 -1.99 16.96 2.25 0.04 -1.95 16 20 C -0.15 -1.10 6.31 -25.38 -0.16 -1.26 16 21 C 0.03 0.23 5.10 -2.75 -0.01 0.21 16 22 N -0.50 -4.05 5.10 -214.61 -1.09 -5.14 16 23 C 0.09 0.62 0.69 -131.60 -0.09 0.53 16 24 C -0.19 -1.24 7.60 37.16 0.28 -0.95 16 25 C -0.14 -0.88 8.49 37.16 0.32 -0.57 16 26 C -0.14 -0.78 8.27 37.16 0.31 -0.47 16 27 C 0.03 0.25 4.42 -1.74 -0.01 0.24 16 28 H 0.06 0.97 7.18 -51.93 -0.37 0.60 16 29 H 0.05 0.51 7.18 -51.93 -0.37 0.14 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.36 8.10 4.71 -40.82 -0.19 7.91 16 34 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 37 H 0.40 3.69 7.65 -40.82 -0.31 3.37 16 38 H 0.09 0.64 7.84 -51.93 -0.41 0.23 16 39 H 0.10 0.62 8.12 -51.92 -0.42 0.20 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.37 5.28 -51.93 -0.27 0.10 16 42 H 0.06 0.49 6.37 -51.93 -0.33 0.16 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.40 6.05 -51.93 -0.31 0.09 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.06 0.40 7.17 -51.93 -0.37 0.02 16 48 H 0.06 0.30 6.78 -51.93 -0.35 -0.05 16 49 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 50 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.09 0.87 4.77 -51.93 -0.25 0.62 16 52 H 0.10 0.96 7.75 -51.93 -0.40 0.56 16 LS Contribution 398.81 15.07 6.01 6.01 Total: -1.00 -32.65 398.81 -8.33 -40.98 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -9.04 Total: 6.41 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 0.23 Total: -1.42 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.94 Total: -59.51 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: 0.09 Total: -7.66 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.14 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.65 -8.33 -40.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753630502.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.604 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds