Wall clock time and date at job start Sat Apr 11 2020 02:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47642 * 2 1 4 4 C 1.53008 * 109.46592 * 119.99733 * 2 1 3 5 5 N 1.46501 * 109.46952 * 294.99733 * 4 2 1 6 6 C 1.36935 * 119.99783 * 180.02562 * 5 4 2 7 7 H 1.08003 * 120.00310 * 0.02562 * 6 5 4 8 8 C 1.38808 * 119.99959 * 180.02562 * 6 5 4 9 9 N 1.31614 * 120.00293 * 180.02562 * 8 6 5 10 10 Si 1.86807 * 120.00073 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46610 * 90.00234 * 10 8 6 12 12 H 1.48496 * 109.47349 * 210.00271 * 10 8 6 13 13 H 1.48501 * 109.46994 * 330.00723 * 10 8 6 14 14 C 1.53002 * 109.47001 * 239.99275 * 2 1 3 15 15 N 1.46497 * 109.47107 * 65.00637 * 14 2 1 16 16 C 1.34771 * 120.00179 * 179.97438 * 15 14 2 17 17 O 1.21286 * 120.00091 * 359.97438 * 16 15 14 18 18 C 1.50702 * 120.00407 * 179.97438 * 16 15 14 19 19 F 1.39894 * 110.77957 * 308.20939 * 18 16 15 20 20 C 1.54594 * 110.72146 * 71.45696 * 18 16 15 21 21 C 1.53989 * 105.14142 * 140.32064 * 20 18 16 22 22 N 1.47907 * 107.22446 * 1.12125 * 21 20 18 23 23 C 1.46896 * 110.99981 * 214.25566 * 22 21 20 24 24 C 1.53009 * 109.47022 * 64.64432 * 23 22 21 25 25 C 1.52998 * 109.46877 * 184.63884 * 23 22 21 26 26 C 1.53001 * 109.47465 * 304.64516 * 23 22 21 27 27 C 1.48811 * 105.67819 * 334.90946 * 22 21 20 28 28 H 1.08993 * 109.47492 * 300.00627 * 1 2 3 29 29 H 1.09005 * 109.46776 * 60.00481 * 1 2 3 30 30 H 1.08996 * 109.47642 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46951 * 54.99879 * 4 2 1 32 32 H 1.09000 * 109.46907 * 174.99841 * 4 2 1 33 33 H 0.96997 * 120.00127 * 359.97438 * 5 4 2 34 34 H 0.96997 * 120.00520 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47209 * 304.99931 * 14 2 1 36 36 H 1.09009 * 109.46743 * 185.00392 * 14 2 1 37 37 H 0.97002 * 119.99691 * 359.97438 * 15 14 2 38 38 H 1.09001 * 110.31246 * 21.39815 * 20 18 16 39 39 H 1.09009 * 110.38972 * 259.27569 * 20 18 16 40 40 H 1.08997 * 109.92100 * 120.57565 * 21 20 18 41 41 H 1.09003 * 109.91487 * 241.67187 * 21 20 18 42 42 H 1.08999 * 109.47075 * 67.03667 * 24 23 22 43 43 H 1.09001 * 109.47138 * 187.04030 * 24 23 22 44 44 H 1.09005 * 109.46986 * 307.03748 * 24 23 22 45 45 H 1.08998 * 109.46939 * 60.00892 * 25 23 22 46 46 H 1.09005 * 109.46537 * 180.02562 * 25 23 22 47 47 H 1.09001 * 109.47546 * 300.00171 * 25 23 22 48 48 H 1.08993 * 109.47088 * 59.99667 * 26 23 22 49 49 H 1.09001 * 109.46943 * 179.97438 * 26 23 22 50 50 H 1.09005 * 109.46877 * 299.99696 * 26 23 22 51 51 H 1.09002 * 110.51610 * 280.54391 * 27 22 21 52 52 H 1.08995 * 110.84143 * 157.55863 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2494 5 7 1.6523 0.0355 2.4424 6 6 2.0017 -0.4201 3.6856 7 1 2.5634 -1.3370 3.7866 8 6 1.6340 0.2966 4.8161 9 7 1.9703 -0.1409 6.0109 10 14 0.6632 1.8830 4.6414 11 1 -0.7902 1.5790 4.6654 12 1 0.9969 2.7940 5.7657 13 1 1.0109 2.5370 3.3543 14 6 2.0400 -0.7214 -1.2492 15 7 1.6525 0.0351 -2.4424 16 6 1.9965 -0.4134 -3.6658 17 8 2.6272 -1.4432 -3.7790 18 6 1.5975 0.3645 -4.8933 19 9 0.2261 0.6407 -4.8818 20 6 2.4177 1.6702 -5.0041 21 6 2.7382 1.8180 -6.5030 22 7 2.1092 0.6752 -7.2001 23 6 2.9261 0.2400 -8.3407 24 6 4.2658 -0.2972 -7.8331 25 6 2.1903 -0.8635 -9.1035 26 6 3.1732 1.4273 -9.2736 27 6 1.9915 -0.4024 -6.1806 28 1 -0.3634 0.5139 0.8898 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6052 -1.7197 1.2953 32 1 3.1262 -0.7995 1.2058 33 1 1.1488 0.8596 2.3517 34 1 1.7137 0.3601 6.8009 35 1 1.6053 -1.7200 -1.2950 36 1 3.1264 -0.7997 -1.2054 37 1 1.1484 0.8589 -2.3518 38 1 3.3385 1.5887 -4.4265 39 1 1.8285 2.5194 -4.6577 40 1 2.3275 2.7546 -6.8800 41 1 3.8173 1.7978 -6.6557 42 1 4.0993 -1.2160 -7.2709 43 1 4.9194 -0.5031 -8.6807 44 1 4.7332 0.4451 -7.1859 45 1 1.2359 -0.4808 -9.4652 46 1 2.7968 -1.1866 -9.9496 47 1 2.0143 -1.7093 -8.4389 48 1 3.6974 2.2134 -8.7302 49 1 3.7798 1.1044 -10.1197 50 1 2.2188 1.8100 -9.6353 51 1 2.9473 -0.9097 -6.0488 52 1 1.2142 -1.1147 -6.4571 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753630502.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:26:25 Heat of formation + Delta-G solvation = -93.679128 kcal Electronic energy + Delta-G solvation = -29253.591103 eV Core-core repulsion = 25201.739631 eV Total energy + Delta-G solvation = -4051.851471 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.222 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.95603 -41.30154 -40.24515 -38.40287 -36.15167 -35.79523 -34.22725 -32.47759 -30.59694 -30.56035 -28.32232 -28.05504 -27.81737 -27.17367 -24.49596 -23.45074 -22.96172 -21.70881 -21.08455 -20.05178 -19.59205 -18.74493 -17.87700 -17.21114 -16.99878 -16.52144 -16.33477 -16.06789 -15.98616 -15.71055 -15.41308 -15.33701 -15.05456 -14.92963 -14.80173 -14.47143 -14.25509 -13.86844 -13.81595 -13.69881 -13.64654 -13.22504 -13.07875 -12.88745 -12.87445 -12.83630 -12.52290 -12.34436 -12.29219 -12.17170 -12.10827 -12.01570 -11.97836 -11.93196 -11.77918 -11.70967 -11.54794 -10.99405 -10.94697 -10.27206 -9.40323 -9.30785 -8.03062 -5.37268 1.21280 1.37161 1.42112 1.49262 1.76886 2.48347 2.80229 3.00659 3.17046 3.28090 3.30580 3.51231 3.63572 3.87103 3.90012 3.97382 3.98704 4.06425 4.09392 4.14329 4.21718 4.48410 4.50043 4.59413 4.61603 4.64539 4.65684 4.71556 4.76479 4.80535 4.88407 4.89335 4.90174 4.96380 4.98180 4.99068 5.05710 5.07484 5.18115 5.22113 5.28854 5.31588 5.41821 5.42010 5.74961 5.78421 6.03810 6.20364 6.26867 6.90403 7.07398 7.82367 8.02775 9.18415 Molecular weight = 329.22amu Principal moments of inertia in cm(-1) A = 0.029770 B = 0.002079 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.326087 B =13464.175853 C =13690.448943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.089 0.911 4 C 0.159 3.841 5 N -0.754 5.754 6 C -0.237 4.237 7 H 0.054 0.946 8 C -0.067 4.067 9 N -0.985 5.985 10 Si 0.958 3.042 11 H -0.277 1.277 12 H -0.296 1.296 13 H -0.247 1.247 14 C 0.134 3.866 15 N -0.701 5.701 16 C 0.505 3.495 17 O -0.557 6.557 18 C 0.103 3.897 19 F -0.186 7.186 20 C -0.143 4.143 21 C 0.031 3.969 22 N -0.508 5.508 23 C 0.089 3.911 24 C -0.183 4.183 25 C -0.136 4.136 26 C -0.136 4.136 27 C 0.029 3.971 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.025 0.975 32 H 0.026 0.974 33 H 0.368 0.632 34 H 0.258 0.742 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.416 0.584 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.067 0.933 42 H 0.050 0.950 43 H 0.075 0.925 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.073 0.927 47 H 0.045 0.955 48 H 0.061 0.939 49 H 0.072 0.928 50 H 0.061 0.939 51 H 0.080 0.920 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.475 6.612 -35.651 36.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.108 0.892 4 C 0.032 3.968 5 N -0.400 5.400 6 C -0.368 4.368 7 H 0.072 0.928 8 C -0.258 4.258 9 N -0.635 5.635 10 Si 0.784 3.216 11 H -0.203 1.203 12 H -0.223 1.223 13 H -0.171 1.171 14 C 0.010 3.990 15 N -0.353 5.353 16 C 0.289 3.711 17 O -0.436 6.436 18 C 0.081 3.919 19 F -0.167 7.167 20 C -0.182 4.182 21 C -0.096 4.096 22 N -0.232 5.232 23 C 0.000 4.000 24 C -0.242 4.242 25 C -0.194 4.194 26 C -0.193 4.193 27 C -0.100 4.100 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.202 0.798 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.253 0.747 38 H 0.112 0.888 39 H 0.131 0.869 40 H 0.117 0.883 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.094 0.906 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.065 0.935 48 H 0.080 0.920 49 H 0.091 0.909 50 H 0.080 0.920 51 H 0.098 0.902 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.479 5.881 -35.817 36.300 hybrid contribution -0.011 0.503 1.268 1.364 sum 0.467 6.384 -34.549 35.137 Atomic orbital electron populations 1.21819 0.93827 1.02384 1.02072 1.21399 0.97237 1.00555 0.92499 0.89228 1.20705 0.97072 0.94194 0.84781 1.42628 1.67860 1.27643 1.01894 1.19029 1.28125 1.05696 0.83977 0.92826 1.25578 1.02689 1.02983 0.94579 1.69893 1.53344 1.42307 0.97950 0.85371 0.78699 0.79557 0.77934 1.20301 1.22321 1.17086 1.21255 1.00137 0.95096 0.82506 1.45900 1.56258 1.28099 1.05014 1.20817 0.79836 0.85240 0.85215 1.90736 1.41272 1.24739 1.86814 1.21892 0.78174 0.97939 0.93909 1.92918 1.31687 1.94729 1.97324 1.23111 1.00954 0.95303 0.98797 1.23008 0.99304 0.96029 0.91248 1.65173 1.46823 1.04783 1.06428 1.21342 0.91027 0.96416 0.91237 1.22523 0.98099 1.01198 1.02360 1.21825 1.00764 0.96936 0.99872 1.21865 1.02273 0.96446 0.98734 1.23645 1.02984 0.94779 0.88556 0.93166 0.90602 0.92762 0.95671 0.95591 0.79789 0.93319 0.91530 0.91189 0.74701 0.88787 0.86926 0.88347 0.91470 0.93070 0.90559 0.92137 0.92038 0.90851 0.93546 0.92012 0.90931 0.91981 0.90243 0.89394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 8.94 71.98 0.64 -2.83 16 2 C -0.10 -2.50 2.46 -10.79 -0.03 -2.53 16 3 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 4 C 0.16 5.77 5.65 86.38 0.49 6.25 16 5 N -0.75 -34.23 5.13 -343.44 -1.76 -35.99 16 6 C -0.24 -13.54 10.47 84.03 0.88 -12.66 16 7 H 0.05 3.38 8.06 -2.91 -0.02 3.36 16 8 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 9 N -0.98 -63.28 13.97 21.65 0.30 -62.98 16 10 Si 0.96 44.60 27.74 68.60 1.90 46.50 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 13 H -0.25 -10.09 6.52 99.48 0.65 -9.44 16 14 C 0.13 3.12 5.06 86.38 0.44 3.56 16 15 N -0.70 -13.68 5.28 -463.05 -2.45 -16.13 16 16 C 0.51 11.26 6.78 87.66 0.59 11.86 16 17 O -0.56 -16.29 15.69 -3.05 -0.05 -16.34 16 18 C 0.10 1.85 1.53 -10.34 -0.02 1.83 16 19 F -0.19 -3.75 16.96 44.97 0.76 -2.99 16 20 C -0.14 -1.77 6.31 31.47 0.20 -1.57 16 21 C 0.03 0.36 5.10 86.44 0.44 0.80 16 22 N -0.51 -7.46 5.10 -832.91 -4.25 -11.70 16 23 C 0.09 1.07 0.69 3.53 0.00 1.07 16 24 C -0.18 -2.20 7.60 71.99 0.55 -1.65 16 25 C -0.14 -1.64 8.49 71.98 0.61 -1.02 16 26 C -0.14 -1.22 8.27 71.98 0.60 -0.62 16 27 C 0.03 0.52 4.42 86.59 0.38 0.90 16 28 H 0.05 1.37 7.18 -2.39 -0.02 1.36 16 29 H 0.08 1.39 7.18 -2.38 -0.02 1.37 16 30 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.37 15.60 4.71 -92.71 -0.44 15.16 16 34 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 35 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.42 6.23 7.65 -92.71 -0.71 5.52 16 38 H 0.09 1.10 7.84 -2.39 -0.02 1.08 16 39 H 0.11 1.05 8.12 -2.38 -0.02 1.04 16 40 H 0.10 0.94 8.14 -2.39 -0.02 0.93 16 41 H 0.07 0.68 5.28 -2.39 -0.01 0.66 16 42 H 0.05 0.76 6.37 -2.39 -0.02 0.75 16 43 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.06 0.71 6.05 -2.38 -0.01 0.70 16 45 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 47 H 0.05 0.64 7.17 -2.39 -0.02 0.63 16 48 H 0.06 0.50 6.78 -2.39 -0.02 0.48 16 49 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 50 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 51 H 0.08 1.57 4.77 -2.39 -0.01 1.56 16 52 H 0.09 1.74 7.75 -2.39 -0.02 1.72 16 Total: -1.00 -71.53 398.81 0.42 -71.11 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: -0.29 Total: 28.58 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 6.25 Total: -0.07 kcal Atomic # 7 Polarization: -118.64 SS G_CDS: -8.15 Total: -126.79 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.05 Total: -16.34 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.76 Total: -2.99 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.90 Total: 46.50 kcal Total: -71.53 0.42 -71.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753630502.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.568 kcal (2) G-P(sol) polarization free energy of solvation -71.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds