Wall clock time and date at job start Sat Apr 11 2020 02:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46880 * 2 1 4 4 C 1.52994 * 109.47602 * 120.00043 * 2 1 3 5 5 N 1.46503 * 109.47183 * 295.00323 * 4 2 1 6 6 C 1.36938 * 119.99727 * 179.97438 * 5 4 2 7 7 H 1.07992 * 120.00044 * 359.97438 * 6 5 4 8 8 C 1.38812 * 119.99610 * 179.97438 * 6 5 4 9 9 N 1.31628 * 120.00133 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00091 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47397 * 89.99648 * 10 8 6 12 12 H 1.48498 * 109.47504 * 209.99723 * 10 8 6 13 13 H 1.48502 * 109.47241 * 329.99626 * 10 8 6 14 14 C 1.53008 * 109.46845 * 240.00377 * 2 1 3 15 15 N 1.46496 * 109.47143 * 64.99592 * 14 2 1 16 16 C 1.34776 * 119.99718 * 179.97438 * 15 14 2 17 17 O 1.21284 * 120.00245 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99975 * 179.97438 * 16 15 14 19 19 F 1.39907 * 110.64222 * 54.30386 * 18 16 15 20 20 C 1.54595 * 110.72856 * 291.15398 * 18 16 15 21 21 C 1.53987 * 105.14192 * 219.68572 * 20 18 16 22 22 N 1.47903 * 107.06009 * 358.76905 * 21 20 18 23 23 C 1.46903 * 111.00370 * 145.84470 * 22 21 20 24 24 C 1.53001 * 109.46751 * 55.18676 * 23 22 21 25 25 C 1.52991 * 109.47364 * 175.19030 * 23 22 21 26 26 C 1.53003 * 109.47031 * 295.19138 * 23 22 21 27 27 C 1.48738 * 105.94016 * 25.20814 * 22 21 20 28 28 H 1.08996 * 109.47395 * 60.00026 * 1 2 3 29 29 H 1.09002 * 109.46848 * 299.99438 * 1 2 3 30 30 H 1.08999 * 109.46880 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46870 * 55.00067 * 4 2 1 32 32 H 1.08997 * 109.47382 * 174.99845 * 4 2 1 33 33 H 0.96992 * 119.99711 * 359.97438 * 5 4 2 34 34 H 0.96995 * 119.99995 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.46814 * 185.00005 * 14 2 1 36 36 H 1.08994 * 109.46941 * 304.99258 * 14 2 1 37 37 H 0.96996 * 120.00356 * 0.02562 * 15 14 2 38 38 H 1.09008 * 110.30505 * 338.60067 * 20 18 16 39 39 H 1.08994 * 110.31469 * 100.66389 * 20 18 16 40 40 H 1.08998 * 109.92247 * 118.12572 * 21 20 18 41 41 H 1.09006 * 109.91733 * 239.41908 * 21 20 18 42 42 H 1.09000 * 109.47008 * 60.00377 * 24 23 22 43 43 H 1.08997 * 109.47042 * 179.97438 * 24 23 22 44 44 H 1.08995 * 109.47768 * 300.00126 * 24 23 22 45 45 H 1.09000 * 109.47324 * 59.99775 * 25 23 22 46 46 H 1.08997 * 109.47230 * 180.02562 * 25 23 22 47 47 H 1.09000 * 109.47077 * 300.00041 * 25 23 22 48 48 H 1.08999 * 109.47057 * 52.85225 * 26 23 22 49 49 H 1.08996 * 109.47217 * 172.84657 * 26 23 22 50 50 H 1.08993 * 109.47085 * 292.85297 * 26 23 22 51 51 H 1.09001 * 110.83542 * 202.57633 * 27 22 21 52 52 H 1.08990 * 110.58858 * 79.38240 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2491 5 7 1.6525 0.0353 2.4424 6 6 2.0013 -0.4209 3.6855 7 1 2.5616 -1.3385 3.7863 8 6 1.6345 0.2962 4.8160 9 7 0.9520 1.4150 4.6931 10 14 2.1108 -0.3256 6.5118 11 1 3.4336 0.2331 6.8905 12 1 1.0904 0.1042 7.5013 13 1 2.1871 -1.8085 6.4919 14 6 2.0400 -0.7212 -1.2494 15 7 1.6523 0.0354 -2.4424 16 6 1.9963 -0.4130 -3.6660 17 8 2.6263 -1.4431 -3.7793 18 6 1.5970 0.3650 -4.8933 19 9 2.0325 1.6913 -4.7999 20 6 0.0668 0.3053 -5.1052 21 6 -0.1232 0.1566 -6.6261 22 7 1.2249 0.1645 -7.2346 23 6 1.2772 -0.7150 -8.4100 24 6 0.1846 -0.3078 -9.4006 25 6 2.6465 -0.5892 -9.0807 26 6 1.0547 -2.1643 -7.9728 27 6 2.1548 -0.3064 -6.1735 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6055 -1.7198 1.2950 32 1 3.1264 -0.7994 1.2054 33 1 1.1489 0.8593 2.3517 34 1 0.6954 1.9159 5.4830 35 1 3.1263 -0.7994 -1.2057 36 1 1.6054 -1.7197 -1.2952 37 1 1.1487 0.8594 -2.3518 38 1 -0.3538 -0.5557 -4.5854 39 1 -0.4002 1.2246 -4.7522 40 1 -0.6249 -0.7854 -6.8473 41 1 -0.7090 0.9916 -7.0105 42 1 0.3431 0.7247 -9.7121 43 1 0.2237 -0.9601 -10.2730 44 1 -0.7909 -0.3974 -8.9229 45 1 3.4248 -0.8793 -8.3749 46 1 2.6851 -1.2414 -9.9531 47 1 2.8050 0.4433 -9.3921 48 1 0.1394 -2.2299 -7.3846 49 1 0.9667 -2.8001 -8.8537 50 1 1.8993 -2.4953 -7.3687 51 1 3.1723 0.0303 -6.3723 52 1 2.1179 -1.3921 -6.0858 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753630504.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:26:29 Heat of formation + Delta-G solvation = -74.890243 kcal Electronic energy + Delta-G solvation = -29184.633167 eV Core-core repulsion = 25133.596443 eV Total energy + Delta-G solvation = -4051.036724 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.222 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.07488 -40.46459 -39.41208 -36.95252 -35.15899 -34.48686 -32.57156 -30.32744 -29.94412 -29.65153 -27.79152 -27.38841 -26.58687 -25.44054 -23.34319 -22.51163 -22.01845 -20.52868 -19.83881 -19.26791 -18.04678 -17.06404 -17.00520 -16.29334 -15.95558 -15.51767 -15.27723 -15.05731 -14.81899 -14.49319 -14.40189 -14.23279 -14.18614 -13.76026 -13.60525 -13.18004 -13.13250 -12.93943 -12.66556 -12.53157 -12.38275 -12.32593 -12.23122 -12.08355 -11.96096 -11.78096 -11.54005 -11.42474 -11.22906 -11.09497 -11.01368 -10.94178 -10.75246 -10.60716 -10.46713 -10.11323 -9.90960 -9.68345 -9.20883 -8.89351 -8.77463 -6.94207 -5.78496 -3.07117 2.20372 2.73560 3.43020 3.47920 3.49133 3.49903 3.74085 3.87454 4.15425 4.34785 4.43000 4.52114 4.57561 4.70007 4.75081 4.80780 4.97693 5.11357 5.13042 5.15225 5.19772 5.24890 5.32916 5.33114 5.38351 5.42364 5.47696 5.48943 5.53491 5.55910 5.63126 5.73102 5.73809 5.83846 5.89157 5.90755 5.94942 6.04896 6.17435 6.30770 6.36907 6.40413 6.61069 6.62225 6.73390 6.82425 7.23595 7.69012 7.86916 8.40520 9.51827 10.08725 10.43520 11.44423 Molecular weight = 329.22amu Principal moments of inertia in cm(-1) A = 0.035815 B = 0.001936 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.613824 B =14458.288925 C =14649.342718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.078 0.922 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.124 3.876 15 N -0.711 5.711 16 C 0.504 3.496 17 O -0.525 6.525 18 C 0.101 3.899 19 F -0.180 7.180 20 C -0.149 4.149 21 C 0.033 3.967 22 N -0.502 5.502 23 C 0.092 3.908 24 C -0.140 4.140 25 C -0.137 4.137 26 C -0.187 4.187 27 C 0.028 3.972 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.022 0.978 32 H 0.021 0.979 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.405 0.595 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.060 0.940 47 H 0.065 0.935 48 H 0.059 0.941 49 H 0.064 0.936 50 H 0.064 0.936 51 H 0.099 0.901 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.097 -2.901 -30.225 30.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.001 3.999 15 N -0.361 5.361 16 C 0.287 3.713 17 O -0.402 6.402 18 C 0.079 3.921 19 F -0.160 7.160 20 C -0.187 4.187 21 C -0.094 4.094 22 N -0.227 5.227 23 C 0.003 3.997 24 C -0.197 4.197 25 C -0.195 4.195 26 C -0.245 4.245 27 C -0.101 4.101 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.240 0.760 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.077 0.923 41 H 0.106 0.894 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.078 0.922 49 H 0.083 0.917 50 H 0.083 0.917 51 H 0.117 0.883 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.430 -3.201 -30.343 30.608 hybrid contribution -0.357 -0.285 1.394 1.467 sum -2.787 -3.486 -28.949 29.291 Atomic orbital electron populations 1.21797 0.94599 1.01929 1.01581 1.21566 0.96775 1.00633 0.94056 0.90366 1.20568 0.96642 0.94186 0.85341 1.42332 1.66954 1.27676 1.00560 1.19233 1.28744 1.05440 0.83635 0.91144 1.24745 1.01002 0.97412 0.97893 1.69657 1.43538 1.16553 1.28517 0.86172 0.77596 0.78001 0.84312 1.21716 1.21775 1.20763 1.21519 1.00443 0.95243 0.82687 1.46059 1.56638 1.27710 1.05719 1.20473 0.80072 0.86161 0.84609 1.90737 1.38920 1.24227 1.86266 1.21913 0.96451 0.78834 0.94894 1.92940 1.90871 1.35127 1.97063 1.23073 0.92720 1.05058 0.97869 1.22930 0.92117 1.02125 0.92254 1.65103 1.04596 1.48052 1.04909 1.21243 0.97025 0.90328 0.91123 1.21894 0.97436 1.02219 0.98194 1.21827 0.94999 1.02558 1.00126 1.22556 1.02330 0.97321 1.02326 1.23735 0.98358 1.00310 0.87653 0.93953 0.91006 0.92793 0.95986 0.96095 0.78185 0.93513 0.91009 0.91023 0.76030 0.89240 0.88438 0.92279 0.89404 0.91630 0.92036 0.92500 0.92478 0.92122 0.91635 0.92171 0.91661 0.91664 0.88307 0.89495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.94 37.16 0.33 -1.69 16 2 C -0.11 -1.67 2.46 -90.62 -0.22 -1.90 16 3 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 4 C 0.16 3.15 5.65 -4.04 -0.02 3.12 16 5 N -0.73 -18.17 5.33 -59.91 -0.32 -18.49 16 6 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 7 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 9 N -0.93 -28.04 13.06 55.49 0.72 -27.31 16 10 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 14 C 0.12 1.66 5.06 -4.04 -0.02 1.64 16 15 N -0.71 -8.28 5.28 -60.29 -0.32 -8.59 16 16 C 0.50 6.27 6.78 -10.99 -0.07 6.20 16 17 O -0.53 -8.08 15.70 5.55 0.09 -7.99 16 18 C 0.10 1.05 1.52 -89.91 -0.14 0.91 16 19 F -0.18 -2.11 16.96 2.25 0.04 -2.08 16 20 C -0.15 -1.16 6.31 -25.38 -0.16 -1.32 16 21 C 0.03 0.24 5.10 -2.76 -0.01 0.23 16 22 N -0.50 -4.22 5.09 -214.68 -1.09 -5.31 16 23 C 0.09 0.64 0.69 -131.60 -0.09 0.55 16 24 C -0.14 -0.81 8.27 37.16 0.31 -0.50 16 25 C -0.14 -0.92 8.48 37.15 0.32 -0.60 16 26 C -0.19 -1.27 7.60 37.16 0.28 -0.99 16 27 C 0.03 0.27 4.40 -1.78 -0.01 0.26 16 28 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 29 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.38 9.93 6.85 -40.82 -0.28 9.65 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.40 4.04 7.66 -40.82 -0.31 3.73 16 38 H 0.09 0.66 7.84 -51.92 -0.41 0.25 16 39 H 0.10 0.66 8.12 -51.93 -0.42 0.24 16 40 H 0.06 0.38 5.29 -51.93 -0.27 0.11 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.06 0.31 6.77 -51.93 -0.35 -0.04 16 45 H 0.06 0.41 7.16 -51.93 -0.37 0.04 16 46 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.41 6.06 -51.93 -0.31 0.10 16 49 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.06 0.51 6.36 -51.93 -0.33 0.18 16 51 H 0.10 1.01 7.74 -51.93 -0.40 0.61 16 52 H 0.09 0.89 4.80 -51.93 -0.25 0.64 16 LS Contribution 401.90 15.07 6.06 6.06 Total: -1.00 -31.76 401.90 -8.69 -40.45 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -9.08 Total: 7.31 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 0.24 Total: -1.43 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: -1.00 Total: -59.70 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.09 Total: -7.99 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.76 -8.69 -40.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753630504.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.442 kcal (2) G-P(sol) polarization free energy of solvation -31.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds