Wall clock time and date at job start Sat Apr 11 2020 02:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46880 * 2 1 4 4 C 1.52994 * 109.47602 * 120.00043 * 2 1 3 5 5 N 1.46503 * 109.47183 * 295.00323 * 4 2 1 6 6 C 1.36938 * 119.99727 * 179.97438 * 5 4 2 7 7 H 1.07992 * 120.00044 * 359.97438 * 6 5 4 8 8 C 1.38812 * 119.99610 * 179.97438 * 6 5 4 9 9 N 1.31628 * 120.00133 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00091 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47397 * 89.99648 * 10 8 6 12 12 H 1.48498 * 109.47504 * 209.99723 * 10 8 6 13 13 H 1.48502 * 109.47241 * 329.99626 * 10 8 6 14 14 C 1.53008 * 109.46845 * 240.00377 * 2 1 3 15 15 N 1.46496 * 109.47143 * 64.99592 * 14 2 1 16 16 C 1.34776 * 119.99718 * 179.97438 * 15 14 2 17 17 O 1.21284 * 120.00245 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99975 * 179.97438 * 16 15 14 19 19 F 1.39907 * 110.64222 * 54.30386 * 18 16 15 20 20 C 1.54595 * 110.72856 * 291.15398 * 18 16 15 21 21 C 1.53987 * 105.14192 * 219.68572 * 20 18 16 22 22 N 1.47903 * 107.06009 * 358.76905 * 21 20 18 23 23 C 1.46903 * 111.00370 * 145.84470 * 22 21 20 24 24 C 1.53001 * 109.46751 * 55.18676 * 23 22 21 25 25 C 1.52991 * 109.47364 * 175.19030 * 23 22 21 26 26 C 1.53003 * 109.47031 * 295.19138 * 23 22 21 27 27 C 1.48738 * 105.94016 * 25.20814 * 22 21 20 28 28 H 1.08996 * 109.47395 * 60.00026 * 1 2 3 29 29 H 1.09002 * 109.46848 * 299.99438 * 1 2 3 30 30 H 1.08999 * 109.46880 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46870 * 55.00067 * 4 2 1 32 32 H 1.08997 * 109.47382 * 174.99845 * 4 2 1 33 33 H 0.96992 * 119.99711 * 359.97438 * 5 4 2 34 34 H 0.96995 * 119.99995 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.46814 * 185.00005 * 14 2 1 36 36 H 1.08994 * 109.46941 * 304.99258 * 14 2 1 37 37 H 0.96996 * 120.00356 * 0.02562 * 15 14 2 38 38 H 1.09008 * 110.30505 * 338.60067 * 20 18 16 39 39 H 1.08994 * 110.31469 * 100.66389 * 20 18 16 40 40 H 1.08998 * 109.92247 * 118.12572 * 21 20 18 41 41 H 1.09006 * 109.91733 * 239.41908 * 21 20 18 42 42 H 1.09000 * 109.47008 * 60.00377 * 24 23 22 43 43 H 1.08997 * 109.47042 * 179.97438 * 24 23 22 44 44 H 1.08995 * 109.47768 * 300.00126 * 24 23 22 45 45 H 1.09000 * 109.47324 * 59.99775 * 25 23 22 46 46 H 1.08997 * 109.47230 * 180.02562 * 25 23 22 47 47 H 1.09000 * 109.47077 * 300.00041 * 25 23 22 48 48 H 1.08999 * 109.47057 * 52.85225 * 26 23 22 49 49 H 1.08996 * 109.47217 * 172.84657 * 26 23 22 50 50 H 1.08993 * 109.47085 * 292.85297 * 26 23 22 51 51 H 1.09001 * 110.83542 * 202.57633 * 27 22 21 52 52 H 1.08990 * 110.58858 * 79.38240 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2491 5 7 1.6525 0.0353 2.4424 6 6 2.0013 -0.4209 3.6855 7 1 2.5616 -1.3385 3.7863 8 6 1.6345 0.2962 4.8160 9 7 0.9520 1.4150 4.6931 10 14 2.1108 -0.3256 6.5118 11 1 3.4336 0.2331 6.8905 12 1 1.0904 0.1042 7.5013 13 1 2.1871 -1.8085 6.4919 14 6 2.0400 -0.7212 -1.2494 15 7 1.6523 0.0354 -2.4424 16 6 1.9963 -0.4130 -3.6660 17 8 2.6263 -1.4431 -3.7793 18 6 1.5970 0.3650 -4.8933 19 9 2.0325 1.6913 -4.7999 20 6 0.0668 0.3053 -5.1052 21 6 -0.1232 0.1566 -6.6261 22 7 1.2249 0.1645 -7.2346 23 6 1.2772 -0.7150 -8.4100 24 6 0.1846 -0.3078 -9.4006 25 6 2.6465 -0.5892 -9.0807 26 6 1.0547 -2.1643 -7.9728 27 6 2.1548 -0.3064 -6.1735 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6055 -1.7198 1.2950 32 1 3.1264 -0.7994 1.2054 33 1 1.1489 0.8593 2.3517 34 1 0.6954 1.9159 5.4830 35 1 3.1263 -0.7994 -1.2057 36 1 1.6054 -1.7197 -1.2952 37 1 1.1487 0.8594 -2.3518 38 1 -0.3538 -0.5557 -4.5854 39 1 -0.4002 1.2246 -4.7522 40 1 -0.6249 -0.7854 -6.8473 41 1 -0.7090 0.9916 -7.0105 42 1 0.3431 0.7247 -9.7121 43 1 0.2237 -0.9601 -10.2730 44 1 -0.7909 -0.3974 -8.9229 45 1 3.4248 -0.8793 -8.3749 46 1 2.6851 -1.2414 -9.9531 47 1 2.8050 0.4433 -9.3921 48 1 0.1394 -2.2299 -7.3846 49 1 0.9667 -2.8001 -8.8537 50 1 1.8993 -2.4953 -7.3687 51 1 3.1723 0.0303 -6.3723 52 1 2.1179 -1.3921 -6.0858 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753630504.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:26:29 Heat of formation + Delta-G solvation = -96.594560 kcal Electronic energy + Delta-G solvation = -29185.574337 eV Core-core repulsion = 25133.596443 eV Total energy + Delta-G solvation = -4051.977894 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.222 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.95470 -41.29699 -40.23776 -38.30277 -36.06286 -35.79321 -34.17605 -32.00705 -30.57772 -30.54153 -28.31422 -28.02089 -27.70496 -27.07180 -24.75613 -23.53352 -22.97263 -21.64026 -20.95561 -19.97964 -19.26449 -18.68155 -17.83498 -17.31022 -16.84355 -16.55021 -16.41238 -16.06040 -15.81052 -15.64332 -15.54208 -15.29171 -15.04942 -14.84204 -14.79668 -14.48656 -14.13348 -13.83160 -13.72187 -13.62942 -13.58051 -13.08353 -12.96478 -12.87304 -12.83181 -12.81109 -12.51424 -12.33206 -12.22558 -12.17832 -12.13437 -12.04217 -11.97488 -11.93956 -11.72982 -11.67493 -11.54009 -10.95485 -10.93356 -10.26673 -9.39170 -9.00016 -7.95968 -5.24315 1.21518 1.47428 1.48818 1.57250 1.78145 2.55715 2.80764 3.01969 3.17503 3.32308 3.37710 3.63608 3.68112 3.88173 3.93351 3.99076 4.04564 4.07762 4.14699 4.22680 4.32863 4.49933 4.51284 4.60309 4.62821 4.66012 4.67068 4.72122 4.77433 4.81097 4.89028 4.90402 4.91943 4.97256 4.98970 5.02134 5.06617 5.10765 5.20262 5.22907 5.32444 5.35723 5.42887 5.45550 5.49567 5.79657 6.04834 6.25651 6.28174 6.90000 7.33530 8.08679 8.32695 9.27390 Molecular weight = 329.22amu Principal moments of inertia in cm(-1) A = 0.035815 B = 0.001936 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.613824 B =14458.288925 C =14649.342718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.095 4.095 3 H 0.076 0.924 4 C 0.157 3.843 5 N -0.742 5.742 6 C -0.247 4.247 7 H 0.074 0.926 8 C -0.075 4.075 9 N -0.967 5.967 10 Si 0.973 3.027 11 H -0.288 1.288 12 H -0.294 1.294 13 H -0.270 1.270 14 C 0.136 3.864 15 N -0.702 5.702 16 C 0.505 3.495 17 O -0.557 6.557 18 C 0.102 3.898 19 F -0.188 7.188 20 C -0.144 4.144 21 C 0.033 3.967 22 N -0.509 5.509 23 C 0.089 3.911 24 C -0.136 4.136 25 C -0.136 4.136 26 C -0.183 4.183 27 C 0.031 3.969 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.024 0.976 32 H 0.019 0.981 33 H 0.376 0.624 34 H 0.252 0.748 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.415 0.585 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.045 0.955 46 H 0.073 0.927 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.076 0.924 50 H 0.050 0.950 51 H 0.087 0.913 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.925 -3.348 -31.563 31.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.115 4.115 3 H 0.094 0.906 4 C 0.030 3.970 5 N -0.385 5.385 6 C -0.378 4.378 7 H 0.092 0.908 8 C -0.267 4.267 9 N -0.618 5.618 10 Si 0.802 3.198 11 H -0.215 1.215 12 H -0.221 1.221 13 H -0.195 1.195 14 C 0.012 3.988 15 N -0.353 5.353 16 C 0.289 3.711 17 O -0.436 6.436 18 C 0.079 3.921 19 F -0.168 7.168 20 C -0.182 4.182 21 C -0.095 4.095 22 N -0.234 5.234 23 C -0.001 4.001 24 C -0.193 4.193 25 C -0.194 4.194 26 C -0.241 4.241 27 C -0.098 4.098 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.037 0.963 33 H 0.209 0.791 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.252 0.748 38 H 0.114 0.886 39 H 0.130 0.870 40 H 0.087 0.913 41 H 0.117 0.883 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.064 0.936 46 H 0.092 0.908 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.095 0.905 50 H 0.069 0.931 51 H 0.106 0.894 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.256 -3.657 -31.712 32.088 hybrid contribution -0.057 -0.177 1.735 1.745 sum -3.314 -3.834 -29.976 30.402 Atomic orbital electron populations 1.21730 0.93634 1.02135 1.01795 1.21341 0.97387 0.99984 0.92741 0.90582 1.20724 0.96539 0.94214 0.85558 1.42507 1.66819 1.27822 1.01339 1.19626 1.27870 1.05309 0.85040 0.90803 1.25553 1.01716 0.97923 1.01543 1.69804 1.45071 1.17815 1.29118 0.85145 0.76930 0.77963 0.79741 1.21501 1.22067 1.19540 1.21252 0.99833 0.95219 0.82483 1.45931 1.56452 1.27840 1.05066 1.20840 0.79282 0.85837 0.85170 1.90725 1.40311 1.25782 1.86749 1.21948 0.98351 0.77998 0.93775 1.92923 1.91187 1.35695 1.97036 1.23120 0.90480 1.06099 0.98501 1.23008 0.91610 1.03113 0.91727 1.65123 1.04964 1.48450 1.04851 1.21346 0.97569 0.90255 0.90892 1.21864 0.97056 1.02180 0.98207 1.21824 0.94714 1.02521 1.00349 1.22515 1.01695 0.97349 1.02575 1.23628 0.98300 0.99811 0.88044 0.90603 0.93859 0.92589 0.95795 0.96294 0.79088 0.93967 0.91874 0.90826 0.74807 0.88594 0.87027 0.91314 0.88340 0.92051 0.90901 0.91963 0.93566 0.90803 0.92112 0.92090 0.90517 0.93074 0.89445 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 8.94 71.98 0.64 -3.04 16 2 C -0.10 -2.79 2.46 -10.79 -0.03 -2.81 16 3 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 4 C 0.16 6.09 5.65 86.38 0.49 6.57 16 5 N -0.74 -37.10 5.33 -343.46 -1.83 -38.93 16 6 C -0.25 -13.77 9.99 84.03 0.84 -12.93 16 7 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 8 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 9 N -0.97 -58.73 13.06 21.65 0.28 -58.44 16 10 Si 0.97 46.14 29.55 68.60 2.03 48.17 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 12 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 13 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 14 C 0.14 3.47 5.06 86.38 0.44 3.91 16 15 N -0.70 -15.25 5.28 -463.06 -2.45 -17.69 16 16 C 0.51 12.06 6.78 87.66 0.59 12.65 16 17 O -0.56 -16.95 15.70 -3.04 -0.05 -17.00 16 18 C 0.10 1.97 1.52 -10.33 -0.02 1.96 16 19 F -0.19 -4.20 16.96 44.97 0.76 -3.44 16 20 C -0.14 -1.91 6.31 31.47 0.20 -1.72 16 21 C 0.03 0.40 5.10 86.44 0.44 0.84 16 22 N -0.51 -7.90 5.09 -833.12 -4.24 -12.14 16 23 C 0.09 1.11 0.69 3.53 0.00 1.12 16 24 C -0.14 -1.28 8.27 71.98 0.60 -0.69 16 25 C -0.14 -1.72 8.48 71.98 0.61 -1.11 16 26 C -0.18 -2.24 7.60 71.98 0.55 -1.69 16 27 C 0.03 0.59 4.40 86.61 0.38 0.97 16 28 H 0.08 1.53 7.18 -2.39 -0.02 1.52 16 29 H 0.04 1.44 7.18 -2.39 -0.02 1.42 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.02 0.93 8.14 -2.39 -0.02 0.92 16 32 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.38 19.77 6.85 -92.71 -0.64 19.13 16 34 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 35 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.41 7.37 7.66 -92.71 -0.71 6.66 16 38 H 0.10 1.18 7.84 -2.38 -0.02 1.16 16 39 H 0.11 1.19 8.12 -2.39 -0.02 1.17 16 40 H 0.07 0.72 5.29 -2.39 -0.01 0.70 16 41 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.06 0.53 6.77 -2.39 -0.02 0.51 16 45 H 0.05 0.67 7.16 -2.39 -0.02 0.65 16 46 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.06 0.73 6.06 -2.39 -0.01 0.72 16 49 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.05 0.77 6.36 -2.39 -0.02 0.76 16 51 H 0.09 1.83 7.74 -2.39 -0.02 1.81 16 52 H 0.08 1.65 4.80 -2.39 -0.01 1.63 16 Total: -1.00 -67.86 401.90 0.29 -67.58 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: -0.43 Total: 31.70 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 6.20 Total: 0.20 kcal Atomic # 7 Polarization: -118.97 SS G_CDS: -8.23 Total: -127.20 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.05 Total: -17.00 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.76 Total: -3.44 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -67.86 0.29 -67.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753630504.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.019 kcal (2) G-P(sol) polarization free energy of solvation -67.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds