Wall clock time and date at job start Sat Apr 11 2020 02:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86794 * 119.99929 * 2 1 4 4 H 1.48502 * 109.47082 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47269 * 299.99709 * 3 2 1 6 6 H 1.48503 * 109.47315 * 59.99946 * 3 2 1 7 7 C 1.38816 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00021 * 156.19569 * 7 2 1 9 9 N 1.36931 * 120.00067 * 336.19926 * 7 2 1 10 10 C 1.46502 * 119.99981 * 326.59945 * 9 7 2 11 11 C 1.50701 * 109.47148 * 276.17863 * 10 9 7 12 12 O 1.20829 * 119.99918 * 0.02562 * 11 10 9 13 13 O 1.34227 * 120.00238 * 179.97438 * 11 10 9 14 14 S 1.65606 * 120.00213 * 146.59635 * 9 7 2 15 15 O 1.42103 * 106.40042 * 336.46218 * 14 9 7 16 16 O 1.42097 * 106.40406 * 203.53898 * 14 9 7 17 17 C 1.76208 * 107.21369 * 90.00043 * 14 9 7 18 18 C 1.38255 * 119.99683 * 269.97804 * 17 14 9 19 19 C 1.38219 * 119.99857 * 180.02562 * 18 17 14 20 20 C 1.38257 * 119.99587 * 359.95633 * 19 18 17 21 21 C 1.38205 * 120.00282 * 0.13492 * 20 19 18 22 22 N 1.48016 * 120.00326 * 179.97438 * 21 20 19 23 23 O 1.21800 * 120.00515 * 179.88952 * 22 21 20 24 24 O 1.21803 * 119.99949 * 359.88706 * 22 21 20 25 25 C 1.38206 * 119.99776 * 90.00183 * 17 14 9 26 26 H 0.96999 * 119.99645 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47022 * 36.18366 * 10 9 7 28 28 H 1.09003 * 109.46996 * 156.18328 * 10 9 7 29 29 H 0.96698 * 117.00176 * 180.02562 * 13 11 10 30 30 H 1.08002 * 120.00500 * 359.97438 * 18 17 14 31 31 H 1.07995 * 119.99663 * 179.97438 * 19 18 17 32 32 H 1.08000 * 119.99290 * 180.02562 * 20 19 18 33 33 H 1.07997 * 120.00297 * 359.70519 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0214 -1.2422 -0.3770 9 7 1.4130 -2.3374 0.4796 10 6 0.4592 -2.2512 1.5883 11 6 1.2087 -2.2371 2.8957 12 8 2.4157 -2.2928 2.9008 13 8 0.5355 -2.1616 4.0545 14 16 1.7685 -3.8078 -0.1943 15 8 2.2318 -3.5439 -1.5115 16 8 0.6629 -4.6554 0.0855 17 6 3.1399 -4.4698 0.6922 18 6 4.4294 -4.1975 0.2746 19 6 5.5052 -4.7172 0.9697 20 6 5.2916 -5.5086 2.0830 21 6 4.0024 -5.7824 2.4993 22 7 3.7737 -6.6301 3.6909 23 8 2.6377 -6.8698 4.0589 24 8 4.7217 -7.0882 4.3034 25 6 2.9264 -5.2617 1.8046 26 1 -0.4849 0.8401 -0.0004 27 1 -0.1252 -1.3360 1.4946 28 1 -0.2080 -3.1128 1.5614 29 1 1.0596 -2.1552 4.8671 30 1 4.5963 -3.5793 -0.5951 31 1 6.5125 -4.5048 0.6432 32 1 6.1322 -5.9143 2.6263 33 1 1.9191 -5.4708 2.1333 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184178.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:26:27 Heat of formation + Delta-G solvation = -119.924247 kcal Electronic energy + Delta-G solvation = -27134.597170 eV Core-core repulsion = 22870.936666 eV Total energy + Delta-G solvation = -4263.660504 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.049 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.16906 -39.57588 -39.31981 -36.61477 -36.53845 -36.09895 -35.19108 -35.08822 -32.13188 -31.70955 -31.60830 -27.86516 -26.59170 -24.45399 -23.59415 -22.57514 -21.19074 -19.91802 -18.72026 -18.67441 -17.55832 -17.54317 -17.47861 -16.97437 -16.73456 -16.15360 -15.72197 -15.55522 -15.04908 -14.81457 -14.48007 -14.32919 -13.53623 -13.40173 -12.76991 -12.53520 -12.30870 -12.12259 -11.71467 -11.57201 -11.53316 -11.40934 -11.22834 -11.18606 -11.13760 -11.07228 -11.01279 -10.78007 -10.65559 -10.44537 -10.02944 -9.88610 -9.60710 -9.39123 -8.14198 -6.56522 -4.26287 -0.17107 0.53884 1.01123 1.32194 1.40201 2.86153 3.01252 3.05848 3.16091 3.20468 3.43799 3.95604 4.16567 4.23737 4.32452 4.45371 4.67068 4.74425 4.80811 4.88995 5.25767 5.30294 5.52817 5.75872 5.78613 5.83288 5.88877 6.10056 6.44038 6.46770 6.87874 7.03187 7.36118 7.65354 8.05655 8.51609 8.64051 9.04052 10.47416 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.014990 B = 0.005395 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.500876 B = 5189.070700 C = 5577.983553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.040 3.960 3 Si 0.921 3.079 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.291 4.291 8 H 0.098 0.902 9 N -0.819 5.819 10 C 0.118 3.882 11 C 0.451 3.549 12 O -0.512 6.512 13 O -0.524 6.524 14 S 2.646 3.354 15 O -0.949 6.949 16 O -0.982 6.982 17 C -0.650 4.650 18 C 0.036 3.964 19 C -0.138 4.138 20 C -0.017 4.017 21 C -0.067 4.067 22 N 0.034 4.966 23 O -0.159 6.159 24 O -0.167 6.167 25 C 0.048 3.952 26 H 0.273 0.727 27 H 0.161 0.839 28 H 0.110 0.890 29 H 0.395 0.605 30 H 0.159 0.841 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.404 -4.698 3.743 8.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.168 4.168 3 Si 0.746 3.254 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.425 4.425 8 H 0.115 0.885 9 N -0.650 5.650 10 C -0.011 4.011 11 C 0.291 3.709 12 O -0.399 6.399 13 O -0.335 6.335 14 S 2.739 3.261 15 O -0.939 6.939 16 O -0.971 6.971 17 C -0.732 4.732 18 C 0.017 3.983 19 C -0.157 4.157 20 C -0.036 4.036 21 C -0.151 4.151 22 N 0.553 4.447 23 O -0.375 6.375 24 O -0.382 6.382 25 C 0.028 3.972 26 H 0.084 0.916 27 H 0.177 0.823 28 H 0.127 0.873 29 H 0.253 0.747 30 H 0.177 0.823 31 H 0.171 0.829 32 H 0.172 0.828 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 6.114 -4.740 2.097 8.015 hybrid contribution 1.320 0.645 1.612 2.181 sum 7.434 -4.096 3.709 9.263 Atomic orbital electron populations 1.69860 1.06018 1.28053 1.45784 1.25347 0.95268 0.99869 0.96267 0.85976 0.80109 0.81241 0.78037 1.19078 1.20398 1.20503 1.19118 0.97106 0.84668 1.41614 0.88480 1.52327 1.54265 1.19234 1.39159 1.21113 0.91791 1.09426 0.78811 1.25314 0.87829 0.71337 0.86381 1.90628 1.15962 1.45699 1.87661 1.84618 1.45749 1.86002 1.17120 1.04469 0.73478 0.74053 0.74144 1.93501 1.82079 1.84464 1.33808 1.93480 1.49224 1.68728 1.85686 1.31806 1.18858 1.11609 1.10893 1.21436 0.90514 0.90174 0.96128 1.21326 1.00546 0.98590 0.95233 1.21206 0.94898 0.92833 0.94649 1.21124 0.96864 1.04781 0.92285 1.43557 1.00518 0.99304 1.01366 1.94558 1.08638 1.63253 1.71093 1.94499 1.35081 1.53365 1.55237 1.20656 0.99458 0.87746 0.89374 0.91637 0.82313 0.87261 0.74743 0.82312 0.82923 0.82762 0.82254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -20.74 11.26 55.49 0.62 -20.11 16 2 C 0.04 0.94 4.99 -17.43 -0.09 0.85 16 3 Si 0.92 18.79 29.62 -169.99 -5.03 13.76 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.29 -6.86 8.71 -15.06 -0.13 -6.99 16 8 H 0.10 2.21 7.94 -52.49 -0.42 1.79 16 9 N -0.82 -18.09 2.39 -61.08 -0.15 -18.23 16 10 C 0.12 2.42 5.89 -5.19 -0.03 2.39 16 11 C 0.45 8.62 8.36 36.01 0.30 8.92 16 12 O -0.51 -10.63 16.81 -18.75 -0.32 -10.94 16 13 O -0.52 -8.23 13.42 -39.25 -0.53 -8.76 16 14 S 2.65 54.54 5.65 -107.50 -0.61 53.93 16 15 O -0.95 -21.28 16.50 -57.17 -0.94 -22.22 16 16 O -0.98 -21.14 15.83 -57.17 -0.90 -22.04 16 17 C -0.65 -11.34 5.79 -39.59 -0.23 -11.57 16 18 C 0.04 0.54 9.52 -39.58 -0.38 0.16 16 19 C -0.14 -1.63 10.05 -39.58 -0.40 -2.02 16 20 C -0.02 -0.21 9.55 -39.59 -0.38 -0.59 16 21 C -0.07 -1.05 6.85 -79.95 -0.55 -1.60 16 22 N 0.03 0.56 4.45 33.96 0.15 0.71 16 23 O -0.16 -2.77 18.45 -29.46 -0.54 -3.31 16 24 O -0.17 -2.68 18.45 -29.46 -0.54 -3.22 16 25 C 0.05 0.81 8.96 -39.58 -0.35 0.46 16 26 H 0.27 6.20 8.31 -40.82 -0.34 5.86 16 27 H 0.16 3.48 5.31 -51.93 -0.28 3.21 16 28 H 0.11 2.06 6.89 -51.93 -0.36 1.70 16 29 H 0.40 4.46 9.10 45.56 0.41 4.88 16 30 H 0.16 2.12 7.62 -52.49 -0.40 1.73 16 31 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.15 1.54 7.61 -52.49 -0.40 1.14 16 33 H 0.16 2.70 7.17 -52.49 -0.38 2.32 16 LS Contribution 320.83 15.07 4.83 4.83 Total: -1.00 -30.19 320.83 -7.55 -37.74 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -1.37 Total: 7.86 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -2.23 Total: -9.99 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.63 Total: -37.64 kcal Atomic # 8 Polarization: -66.72 SS G_CDS: -3.78 Total: -70.50 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Atomic # 16 Polarization: 54.54 SS G_CDS: -0.61 Total: 53.93 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.19 -7.55 -37.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184178.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.184 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds