Wall clock time and date at job start Sat Apr 11 2020 02:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.47410 * 2 1 4 4 C 1.36906 * 119.99545 * 96.73778 * 3 2 1 5 5 H 1.08000 * 120.00153 * 160.79820 * 4 3 2 6 6 C 1.39013 * 120.00537 * 340.79069 * 4 3 2 7 7 N 1.31392 * 120.00000 * 358.17543 * 6 4 3 8 8 Si 1.86798 * 120.00617 * 178.17020 * 6 4 3 9 9 H 1.48508 * 109.47055 * 60.00085 * 8 6 4 10 10 H 1.48504 * 109.47508 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47216 * 300.00291 * 8 6 4 12 12 C 1.34774 * 120.00224 * 276.73851 * 3 2 1 13 13 O 1.21637 * 119.99966 * 184.42125 * 12 3 2 14 14 C 1.47330 * 119.99813 * 4.42271 * 12 3 2 15 15 C 1.39849 * 120.20158 * 296.52228 * 14 12 3 16 16 C 1.37779 * 119.95382 * 180.02562 * 15 14 12 17 17 Br 1.89095 * 119.82361 * 179.97438 * 16 15 14 18 18 C 1.38720 * 120.34901 * 0.02562 * 16 15 14 19 19 C 1.38107 * 120.40310 * 359.74078 * 18 16 15 20 20 F 1.35097 * 119.98281 * 180.25848 * 19 18 16 21 21 C 1.39132 * 120.04200 * 0.51403 * 19 18 16 22 22 N 1.39068 * 120.17954 * 179.76822 * 21 19 18 23 23 H 1.08995 * 109.47268 * 299.99801 * 1 2 3 24 24 H 1.09007 * 109.46898 * 59.99663 * 1 2 3 25 25 H 1.09002 * 109.46988 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.47396 * 240.00134 * 2 1 3 27 27 H 1.08998 * 109.47483 * 120.00270 * 2 1 3 28 28 H 0.97000 * 120.00267 * 180.02562 * 7 6 4 29 29 H 1.08010 * 120.02180 * 359.97438 * 15 14 12 30 30 H 1.08000 * 119.79583 * 179.97438 * 18 16 15 31 31 H 0.96996 * 120.00406 * 174.10382 * 22 21 19 32 32 H 0.97003 * 119.99584 * 354.10725 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3777 1.9801 1.1775 5 1 3.0136 2.8530 1.1674 6 6 1.9240 1.4649 2.3863 7 7 1.1212 0.4248 2.3971 8 14 2.4555 2.2511 3.9952 9 1 2.0159 3.6694 4.0222 10 1 1.8391 1.5196 5.1311 11 1 3.9347 2.1892 4.1115 12 6 2.1139 2.0622 -1.1591 13 8 2.5944 3.1796 -1.1701 14 6 1.6364 1.4533 -2.4128 15 6 2.2440 0.2953 -2.9085 16 6 1.7937 -0.2696 -4.0817 17 35 2.6184 -1.8349 -4.7490 18 6 0.7391 0.3044 -4.7764 19 6 0.1252 1.4452 -4.2976 20 9 -0.9045 1.9942 -4.9784 21 6 0.5701 2.0325 -3.1174 22 7 -0.0428 3.1840 -2.6352 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 0.8043 0.0655 3.2406 29 1 3.0663 -0.1553 -2.3725 30 1 0.3935 -0.1456 -5.6953 31 1 0.2111 3.5429 -1.7706 32 1 -0.7243 3.6282 -3.1636 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001630960441.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:27:25 Heat of formation + Delta-G solvation = -36.779194 kcal Electronic energy + Delta-G solvation = -20785.935771 eV Core-core repulsion = 17321.782104 eV Total energy + Delta-G solvation = -3464.153667 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 330.012 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.70000 -39.75141 -37.65334 -35.31867 -34.50999 -32.04069 -30.97542 -30.43982 -29.44977 -27.63790 -25.35948 -23.51699 -22.07876 -21.87852 -19.51775 -17.66231 -17.17648 -16.86050 -16.72107 -15.77810 -15.44512 -14.88072 -14.65719 -14.35211 -14.19122 -13.71089 -13.06067 -12.92796 -12.85218 -12.59526 -11.89491 -11.70894 -11.58089 -11.44746 -11.24899 -11.11651 -10.84894 -10.44941 -10.24468 -10.16841 -10.02314 -9.77942 -9.00236 -8.75552 -8.47799 -7.79366 -7.35352 -6.36763 -4.00014 1.20171 1.38483 1.78798 3.09175 3.17650 3.20776 3.47902 3.78452 3.95120 4.05219 4.39429 4.73288 4.95025 5.03804 5.15620 5.38770 5.67128 5.82543 6.11112 6.12981 6.22715 6.34096 6.59530 6.66171 6.76140 6.81290 7.27640 7.44102 7.51687 7.65403 7.87287 7.99905 8.39282 9.02436 9.27865 9.82139 10.55078 Molecular weight = 330.01amu Principal moments of inertia in cm(-1) A = 0.016068 B = 0.004776 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.205616 B = 5861.687954 C = 6860.111429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.114 3.886 3 N -0.423 5.423 4 C -0.300 4.300 5 H 0.103 0.897 6 C 0.028 3.972 7 N -0.871 5.871 8 Si 0.933 3.067 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.273 1.273 12 C 0.479 3.521 13 O -0.587 6.587 14 C -0.135 4.135 15 C -0.026 4.026 16 C -0.130 4.130 17 Br -0.056 7.056 18 C -0.075 4.075 19 C 0.011 3.989 20 F -0.141 7.141 21 C 0.243 3.757 22 N -0.850 5.850 23 H 0.086 0.914 24 H 0.019 0.981 25 H 0.037 0.963 26 H 0.033 0.967 27 H 0.116 0.884 28 H 0.269 0.731 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.415 0.585 32 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.989 -5.181 -11.173 12.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.009 4.009 3 N -0.139 5.139 4 C -0.428 4.428 5 H 0.120 0.880 6 C -0.174 4.174 7 N -0.512 5.512 8 Si 0.759 3.241 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.198 1.198 12 C 0.267 3.733 13 O -0.473 6.473 14 C -0.144 4.144 15 C -0.047 4.047 16 C -0.212 4.212 17 Br 0.028 6.972 18 C -0.097 4.097 19 C -0.014 4.014 20 F -0.120 7.120 21 C 0.131 3.869 22 N -0.387 5.387 23 H 0.105 0.895 24 H 0.038 0.962 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.134 0.866 28 H 0.080 0.920 29 H 0.157 0.843 30 H 0.158 0.842 31 H 0.247 0.753 32 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -1.576 -5.329 -11.217 12.518 hybrid contribution -0.490 0.869 0.866 1.321 sum -2.066 -4.460 -10.351 11.459 Atomic orbital electron populations 1.22063 0.96727 0.99818 1.01213 1.21753 0.94669 0.83232 1.01285 1.43751 1.53619 1.11327 1.05186 1.19747 1.28229 1.12674 0.82119 0.87960 1.25386 0.95698 0.96551 0.99811 1.70014 1.31645 1.22470 1.27023 0.85886 0.78924 0.79122 0.80124 1.19837 1.20837 1.19821 1.17520 0.86539 0.86131 0.83145 1.90652 1.50236 1.20174 1.86251 1.19566 0.97888 0.97833 0.99141 1.21042 0.98026 0.92752 0.92905 1.20919 1.02425 0.97896 0.99930 1.96625 1.80538 1.33050 1.86957 1.20688 0.94911 0.94083 0.99991 1.16717 0.92800 0.97675 0.94228 1.91428 1.56327 1.85233 1.79045 1.17653 0.90871 0.87556 0.90813 1.42364 1.44312 1.27234 1.24771 0.89548 0.96207 0.94393 0.94844 0.86620 0.92043 0.84294 0.84226 0.75308 0.77155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.55 37.16 0.35 -2.56 16 2 C 0.11 2.47 5.04 -4.04 -0.02 2.45 16 3 N -0.42 -10.21 2.64 -116.06 -0.31 -10.51 16 4 C -0.30 -7.79 9.41 -15.00 -0.14 -7.93 16 5 H 0.10 2.79 7.29 -52.49 -0.38 2.41 16 6 C 0.03 0.69 5.30 -17.45 -0.09 0.60 16 7 N -0.87 -21.02 7.86 55.50 0.44 -20.58 16 8 Si 0.93 19.57 29.55 -169.99 -5.02 14.55 16 9 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 10 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 11 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 12 C 0.48 11.24 6.00 -12.56 -0.08 11.16 16 13 O -0.59 -15.54 16.25 5.24 0.09 -15.45 16 14 C -0.13 -2.63 4.06 -104.81 -0.43 -3.06 16 15 C -0.03 -0.45 7.55 -39.15 -0.30 -0.74 16 16 C -0.13 -1.96 6.22 -39.57 -0.25 -2.21 16 17 Br -0.06 -0.73 33.68 -68.01 -2.29 -3.02 16 18 C -0.08 -1.08 9.74 -39.45 -0.38 -1.47 16 19 C 0.01 0.17 7.30 -39.30 -0.29 -0.12 16 20 F -0.14 -2.09 16.64 2.25 0.04 -2.05 16 21 C 0.24 4.29 6.62 -83.46 -0.55 3.74 16 22 N -0.85 -13.88 8.97 32.61 0.29 -13.59 16 23 H 0.09 2.00 6.29 -51.93 -0.33 1.68 16 24 H 0.02 0.39 7.17 -51.93 -0.37 0.02 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.03 0.66 4.94 -51.92 -0.26 0.40 16 27 H 0.12 2.72 5.82 -51.93 -0.30 2.42 16 28 H 0.27 6.21 8.31 -40.82 -0.34 5.87 16 29 H 0.14 2.35 7.37 -52.48 -0.39 1.97 16 30 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.42 7.52 7.34 -40.82 -0.30 7.22 16 32 H 0.40 5.32 8.32 -40.82 -0.34 4.98 16 LS Contribution 292.75 15.07 4.41 4.41 Total: -1.00 -26.88 292.75 -7.17 -34.05 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -2.65 Total: 12.34 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -2.16 Total: -0.14 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.42 Total: -44.68 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: 0.09 Total: -15.45 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Atomic # 35 Polarization: -0.73 SS G_CDS: -2.29 Total: -3.02 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -26.88 -7.17 -34.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001630960441.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.734 kcal (2) G-P(sol) polarization free energy of solvation -26.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds