Wall clock time and date at job start Sat Apr 11 2020 02:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.50703 * 109.46747 * 240.00334 * 2 1 3 5 5 H 1.08001 * 120.00037 * 239.99519 * 4 2 1 6 6 C 1.37875 * 120.00214 * 60.00163 * 4 2 1 7 7 N 1.31520 * 119.99609 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00201 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46807 * 60.00091 * 8 6 4 10 10 H 1.48498 * 109.47276 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47057 * 299.99983 * 8 6 4 12 12 C 1.50700 * 109.47092 * 120.00550 * 2 1 3 13 13 O 1.21283 * 119.99803 * 119.99700 * 12 2 1 14 14 N 1.34777 * 119.99675 * 300.27576 * 12 2 1 15 15 C 1.46497 * 119.99525 * 179.72583 * 14 12 2 16 16 C 1.50706 * 109.47174 * 179.97438 * 15 14 12 17 17 C 1.38699 * 120.38794 * 104.99621 * 16 15 14 18 18 C 1.38534 * 118.46072 * 180.02562 * 17 16 15 19 19 C 1.38542 * 119.16356 * 0.02562 * 18 17 16 20 20 F 1.35092 * 119.64522 * 180.02562 * 19 18 17 21 21 N 1.32045 * 120.70979 * 0.02562 * 19 18 17 22 22 C 1.32012 * 121.67209 * 359.65866 * 21 19 18 23 23 Br 1.89096 * 119.61455 * 180.30932 * 22 21 19 24 24 H 1.09005 * 109.47323 * 59.99789 * 1 2 3 25 25 H 1.09006 * 109.47458 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47239 * 299.99568 * 1 2 3 27 27 H 0.97006 * 119.99301 * 180.02562 * 7 6 4 28 28 H 0.97000 * 119.99894 * 359.71837 * 14 12 2 29 29 H 1.08995 * 109.47421 * 299.99467 * 15 14 12 30 30 H 1.09001 * 109.47621 * 60.00103 * 15 14 12 31 31 H 1.08001 * 120.77345 * 0.03341 * 17 16 15 32 32 H 1.08001 * 120.42178 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8304 -2.6033 8 14 2.3223 -1.1193 -4.0081 9 1 1.8277 -2.5196 -4.0083 10 1 1.8277 -0.4189 -5.2205 11 1 3.8073 -1.1188 -4.0079 12 6 2.0323 -0.7105 1.2304 13 8 2.7295 -1.6966 1.1190 14 7 1.7021 -0.2534 2.4545 15 6 2.1855 -0.9476 3.6505 16 6 1.6792 -0.2402 4.8811 17 6 0.6444 -0.7843 5.6275 18 6 0.2100 -0.1001 6.7510 19 6 0.8189 1.0974 7.0896 20 9 0.4034 1.7725 8.1835 21 7 1.8011 1.5860 6.3546 22 6 2.2432 0.9566 5.2817 23 35 3.6591 1.7050 4.2763 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7089 1.1616 -3.4844 28 1 1.1445 0.5353 2.5435 29 1 1.8217 -1.9751 3.6463 30 1 3.2755 -0.9481 3.6549 31 1 0.1880 -1.7198 5.3395 32 1 -0.5937 -0.4947 7.3549 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646373327.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:27:59 Heat of formation + Delta-G solvation = -43.298380 kcal Electronic energy + Delta-G solvation = -19584.597055 eV Core-core repulsion = 16120.160695 eV Total energy + Delta-G solvation = -3464.436360 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 330.012 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.41584 -40.71694 -38.74559 -35.04065 -33.73303 -33.34254 -32.15188 -30.59582 -29.87260 -26.35546 -25.12874 -24.11246 -23.01531 -21.92633 -19.47725 -18.43761 -17.83799 -16.75933 -16.53670 -16.19232 -15.31417 -15.12351 -14.80913 -14.59898 -14.32730 -14.06267 -13.80935 -13.60856 -12.89655 -12.80661 -12.41481 -12.10560 -11.48997 -11.24039 -11.00543 -10.76019 -10.69729 -10.53822 -10.35643 -10.25542 -10.18947 -9.96424 -9.28690 -8.98794 -8.60979 -8.53766 -8.32118 -6.02801 -4.06086 0.21917 0.53787 0.99431 2.90047 3.16407 3.36436 3.39135 3.44325 3.69610 3.88870 4.04776 4.20594 4.35164 4.48324 4.61265 4.91880 5.26709 5.30734 5.33218 5.66117 5.77548 5.97332 6.22096 6.60637 6.81372 6.88924 6.91206 6.95879 7.47084 7.74907 7.97259 8.12099 8.40558 9.02428 9.19001 9.59424 11.04705 Molecular weight = 330.01amu Principal moments of inertia in cm(-1) A = 0.022160 B = 0.003599 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.255169 B = 7778.967308 C = 8294.337707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.030 3.970 3 H 0.054 0.946 4 C -0.501 4.501 5 H 0.074 0.926 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.524 3.476 13 O -0.543 6.543 14 N -0.740 5.740 15 C 0.159 3.841 16 C -0.128 4.128 17 C -0.023 4.023 18 C -0.180 4.180 19 C 0.317 3.683 20 F -0.107 7.107 21 N -0.492 5.492 22 C 0.166 3.834 23 Br 0.027 6.973 24 H 0.093 0.907 25 H 0.031 0.969 26 H 0.011 0.989 27 H 0.261 0.739 28 H 0.396 0.604 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.161 0.839 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.185 0.829 19.946 19.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.009 3.991 3 H 0.071 0.929 4 C -0.540 4.540 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.314 3.686 13 O -0.418 6.418 14 N -0.395 5.395 15 C 0.034 3.966 16 C -0.133 4.133 17 C -0.050 4.050 18 C -0.201 4.201 19 C 0.161 3.839 20 F -0.086 7.086 21 N -0.208 5.208 22 C -0.051 4.051 23 Br 0.111 6.889 24 H 0.112 0.888 25 H 0.050 0.950 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.230 0.770 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.178 0.822 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.158 1.308 19.611 19.655 hybrid contribution -0.791 -0.608 -0.318 1.047 sum -0.633 0.700 19.293 19.316 Atomic orbital electron populations 1.21745 0.96572 0.99770 1.00912 1.18871 0.94103 0.96939 0.89141 0.92874 1.21100 1.31074 1.12842 0.88967 0.90805 1.24945 0.95116 0.95051 0.99087 1.69867 1.37059 1.23022 1.23633 0.86515 0.79303 0.79695 0.81675 1.20211 1.21412 1.20194 1.21994 0.78310 0.84229 0.84072 1.90539 1.37876 1.26845 1.86552 1.46299 1.55743 1.32731 1.04772 1.20079 1.00142 0.95583 0.80759 1.20948 0.97590 0.95287 0.99456 1.21554 0.92544 0.99451 0.91457 1.21980 1.03113 0.95065 0.99975 1.18078 0.91953 0.88994 0.84869 1.91657 1.87690 1.80039 1.49164 1.66766 1.12885 1.34985 1.06153 1.22616 0.96732 0.92740 0.93004 1.96968 1.40749 1.84267 1.66872 0.88846 0.94985 0.97025 0.92917 0.76997 0.90155 0.89804 0.82173 0.82476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.86 37.16 0.33 -2.61 16 2 C 0.03 0.74 2.64 -92.92 -0.25 0.49 16 3 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.50 -13.94 8.37 -34.44 -0.29 -14.23 16 5 H 0.07 2.16 6.75 -52.49 -0.35 1.81 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -24.87 11.32 55.43 0.63 -24.24 16 8 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 12 C 0.52 11.28 7.15 -10.98 -0.08 11.20 16 13 O -0.54 -13.40 15.46 5.55 0.09 -13.32 16 14 N -0.74 -11.92 5.20 -61.47 -0.32 -12.24 16 15 C 0.16 2.09 5.08 -5.19 -0.03 2.07 16 16 C -0.13 -1.40 5.27 -104.45 -0.55 -1.95 16 17 C -0.02 -0.19 9.80 -39.30 -0.39 -0.58 16 18 C -0.18 -1.40 10.08 -39.36 -0.40 -1.80 16 19 C 0.32 3.38 8.41 -17.35 -0.15 3.24 16 20 F -0.11 -1.14 17.29 2.25 0.04 -1.10 16 21 N -0.49 -6.29 10.34 -11.98 -0.12 -6.42 16 22 C 0.17 2.06 7.16 -17.48 -0.13 1.93 16 23 Br 0.03 0.35 32.10 -68.01 -2.18 -1.83 16 24 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.01 0.20 7.55 -51.93 -0.39 -0.19 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.40 5.84 7.87 -40.82 -0.32 5.52 16 29 H 0.08 1.00 8.00 -51.93 -0.42 0.59 16 30 H 0.08 1.18 7.39 -51.93 -0.38 0.79 16 31 H 0.16 0.89 8.05 -52.49 -0.42 0.46 16 32 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 305.05 15.07 4.60 4.60 Total: -1.00 -31.08 305.05 -7.31 -38.40 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -3.01 Total: 0.30 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -2.01 Total: -0.71 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.18 Total: -42.90 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.09 Total: -13.32 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.04 Total: -1.10 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 35 Polarization: 0.35 SS G_CDS: -2.18 Total: -1.83 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.08 -7.31 -38.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646373327.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.903 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds