Wall clock time and date at job start Sat Apr 11 2020 02:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 119.99785 * 2 1 4 4 H 1.48500 * 109.47073 * 240.00133 * 3 2 1 5 5 H 1.48503 * 109.46902 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47135 * 119.99734 * 3 2 1 7 7 C 1.38806 * 120.00496 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00070 * 204.81906 * 7 2 1 9 9 N 1.36943 * 119.99906 * 24.82004 * 7 2 1 10 10 C 1.46503 * 119.99744 * 228.59582 * 9 7 2 11 11 C 1.53000 * 117.49999 * 8.72293 * 10 9 7 12 12 C 1.53005 * 117.49766 * 300.06442 * 10 9 7 13 13 S 1.65590 * 120.00098 * 48.58948 * 9 7 2 14 14 O 1.42099 * 106.40563 * 336.46576 * 13 9 7 15 15 O 1.42104 * 106.40334 * 203.54124 * 13 9 7 16 16 C 1.76204 * 107.21716 * 90.00463 * 13 9 7 17 17 C 1.38217 * 120.01589 * 115.29614 * 16 13 9 18 18 C 1.38218 * 120.02724 * 180.27206 * 17 16 13 19 19 C 1.38274 * 120.05121 * 359.45363 * 18 17 16 20 20 N 1.47998 * 119.98726 * 180.27012 * 19 18 17 21 21 O 1.21797 * 120.00348 * 0.02562 * 20 19 18 22 22 O 1.21804 * 119.99867 * 179.97438 * 20 19 18 23 23 C 1.38175 * 120.02233 * 0.25162 * 19 18 17 24 24 C 1.38436 * 120.01151 * 294.99889 * 16 13 9 25 25 F 1.35104 * 120.02660 * 0.02562 * 24 16 13 26 26 H 0.97001 * 120.00573 * 354.23780 * 1 2 3 27 27 H 1.08994 * 115.54966 * 154.39315 * 10 9 7 28 28 H 1.08999 * 117.49993 * 359.97438 * 11 10 9 29 29 H 1.08995 * 117.50249 * 145.02234 * 11 10 9 30 30 H 1.08996 * 117.49809 * 214.98425 * 12 10 9 31 31 H 1.09004 * 117.49679 * 359.97438 * 12 10 9 32 32 H 1.08000 * 119.98676 * 0.02562 * 17 16 13 33 33 H 1.07998 * 119.97700 * 179.72361 * 18 17 16 34 34 H 1.08000 * 120.01152 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0155 -1.2453 0.3921 9 7 1.4205 -2.3330 -0.4989 10 6 1.4523 -3.5771 0.2742 11 6 1.9745 -3.5033 1.7104 12 6 2.8245 -4.1594 0.6194 13 16 0.6714 -2.2944 -1.9751 14 8 0.3167 -0.9386 -2.2099 15 8 -0.2735 -3.3559 -1.9735 16 6 1.8828 -2.7086 -3.1858 17 6 1.7515 -3.8679 -3.9269 18 6 2.7045 -4.1958 -4.8727 19 6 3.7845 -3.3592 -5.0865 20 7 4.8010 -3.7087 -6.1038 21 8 4.6860 -4.7329 -6.7528 22 8 5.7521 -2.9716 -6.2926 23 6 3.9146 -2.1967 -4.3511 24 6 2.9633 -1.8699 -3.3993 25 9 3.0898 -0.7338 -2.6793 26 1 -0.4851 0.8358 0.0843 27 1 0.6449 -4.2796 0.0677 28 1 2.2948 -2.5292 2.0800 29 1 1.5110 -4.1574 2.4488 30 1 2.9197 -5.2450 0.6404 31 1 3.7035 -3.6171 0.2710 32 1 0.9059 -4.5197 -3.7642 33 1 2.6035 -5.1041 -5.4482 34 1 4.7580 -1.5431 -4.5185 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051155833.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:27:30 Heat of formation + Delta-G solvation = -58.748377 kcal Electronic energy + Delta-G solvation = -27110.564232 eV Core-core repulsion = 22861.929303 eV Total energy + Delta-G solvation = -4248.634930 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.056 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.28450 -43.48624 -40.26766 -38.88066 -37.88709 -37.65222 -36.17378 -35.21634 -33.36321 -32.60345 -32.16542 -28.05855 -26.95707 -24.48920 -23.99688 -23.03185 -22.28287 -20.90531 -20.77635 -20.05901 -19.52117 -18.86530 -18.16712 -17.94251 -17.61999 -17.45231 -17.25234 -16.81635 -16.12261 -15.67313 -15.52061 -15.21422 -15.04117 -14.41555 -14.12588 -14.02324 -13.67088 -13.28087 -13.18265 -12.97278 -12.86663 -12.59418 -12.54034 -12.51278 -12.44957 -12.31713 -12.14738 -12.10474 -11.73439 -11.65408 -11.20306 -10.95858 -10.61738 -10.37932 -9.43497 -8.59173 -6.17642 -1.65280 -0.43634 -0.20963 -0.05163 0.04174 1.44837 1.54842 1.56588 1.74231 2.24255 2.60481 2.69104 2.91256 3.03824 3.15951 3.28192 3.35901 3.62226 3.82923 4.00619 4.08364 4.21583 4.31877 4.34338 4.35860 4.49903 4.61050 4.84645 4.89659 4.94027 5.19776 5.24611 5.33196 5.52203 5.69854 6.12597 6.32729 6.84279 7.26083 8.44116 Molecular weight = 330.06amu Principal moments of inertia in cm(-1) A = 0.014724 B = 0.005458 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.136595 B = 5129.271192 C = 5759.332682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.027 3.973 3 Si 0.963 3.037 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.243 1.243 7 C -0.244 4.244 8 H 0.102 0.898 9 N -0.780 5.780 10 C 0.054 3.946 11 C -0.150 4.150 12 C -0.187 4.187 13 S 2.501 3.499 14 O -0.973 6.973 15 O -1.028 7.028 16 C -0.667 4.667 17 C -0.012 4.012 18 C -0.072 4.072 19 C 0.002 3.998 20 N 0.029 4.971 21 O -0.140 6.140 22 O -0.171 6.171 23 C -0.114 4.114 24 C 0.179 3.821 25 F -0.109 7.109 26 H 0.285 0.715 27 H 0.120 0.880 28 H 0.098 0.902 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.088 0.912 32 H 0.178 0.822 33 H 0.194 0.806 34 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.964 -6.270 -1.664 9.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.191 4.191 3 Si 0.785 3.215 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.166 1.166 7 C -0.397 4.397 8 H 0.119 0.881 9 N -0.600 5.600 10 C -0.054 4.054 11 C -0.189 4.189 12 C -0.226 4.226 13 S 2.603 3.397 14 O -0.961 6.961 15 O -1.017 7.017 16 C -0.743 4.743 17 C -0.032 4.032 18 C -0.092 4.092 19 C -0.081 4.081 20 N 0.550 4.450 21 O -0.361 6.361 22 O -0.384 6.384 23 C -0.134 4.134 24 C 0.158 3.842 25 F -0.087 7.087 26 H 0.095 0.905 27 H 0.137 0.863 28 H 0.116 0.884 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.106 0.894 32 H 0.195 0.805 33 H 0.211 0.789 34 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 5.365 -5.956 -1.757 8.206 hybrid contribution 0.773 1.026 -0.718 1.472 sum 6.138 -4.930 -2.475 8.252 Atomic orbital electron populations 1.69861 1.08963 1.30990 1.32975 1.26518 0.95303 1.03801 0.93508 0.85436 0.78888 0.76885 0.80326 1.18977 1.20858 1.16598 1.19458 0.99516 0.85797 1.34975 0.88082 1.52609 1.72364 1.12887 1.22146 1.21691 0.98152 0.88242 0.97281 1.23210 1.02366 1.02927 0.90412 1.23420 0.94519 1.00875 1.03827 1.14254 0.79077 0.72755 0.73606 1.93393 1.82453 1.35366 1.84912 1.93224 1.63409 1.57961 1.87112 1.33209 1.18424 1.03139 1.19487 1.21103 0.98248 0.93266 0.90564 1.21515 0.90085 1.00157 0.97430 1.20945 0.92894 0.99074 0.95201 1.43573 1.01069 0.99921 1.00450 1.94517 1.81883 1.14114 1.45558 1.94559 1.22737 1.48657 1.72428 1.20999 1.00747 0.97031 0.94625 1.16822 0.93519 0.83005 0.90879 1.91704 1.95213 1.46707 1.75068 0.90482 0.86277 0.88364 0.86802 0.86525 0.89363 0.80512 0.78854 0.80130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -41.39 11.51 21.65 0.25 -41.15 16 2 C 0.03 1.26 4.02 84.86 0.34 1.60 16 3 Si 0.96 38.13 29.63 68.60 2.03 40.17 16 4 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.24 -8.47 7.11 99.48 0.71 -7.76 16 7 C -0.24 -10.89 6.47 84.03 0.54 -10.35 16 8 H 0.10 4.12 7.75 -2.91 -0.02 4.10 16 9 N -0.78 -34.31 3.05 -322.93 -0.99 -35.30 16 10 C 0.05 1.99 6.39 44.99 0.29 2.28 16 11 C -0.15 -4.55 9.84 30.62 0.30 -4.24 16 12 C -0.19 -5.31 10.27 30.62 0.31 -4.99 16 13 S 2.50 117.74 5.09 -56.49 -0.29 117.46 16 14 O -0.97 -53.04 13.44 -128.00 -1.72 -54.76 16 15 O -1.03 -50.51 15.75 -128.00 -2.02 -52.53 16 16 C -0.67 -25.54 5.91 22.31 0.13 -25.41 16 17 C -0.01 -0.38 9.55 22.26 0.21 -0.17 16 18 C -0.07 -1.84 9.55 22.27 0.21 -1.63 16 19 C 0.00 0.05 6.85 36.37 0.25 0.30 16 20 N 0.03 0.83 4.45 -46.49 -0.21 0.62 16 21 O -0.14 -3.83 18.45 18.89 0.35 -3.48 16 22 O -0.17 -5.09 18.45 18.88 0.35 -4.74 16 23 C -0.11 -3.46 9.53 22.31 0.21 -3.24 16 24 C 0.18 6.59 7.21 22.37 0.16 6.76 16 25 F -0.11 -4.48 15.07 44.97 0.68 -3.81 16 26 H 0.29 14.19 8.32 -92.71 -0.77 13.42 16 27 H 0.12 4.39 7.37 -2.39 -0.02 4.37 16 28 H 0.10 3.22 6.99 -2.39 -0.02 3.21 16 29 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 32 H 0.18 4.91 7.33 -2.91 -0.02 4.89 16 33 H 0.19 3.50 7.61 -2.91 -0.02 3.48 16 34 H 0.18 4.72 7.61 -2.91 -0.02 4.70 16 Total: -1.00 -61.41 319.22 2.58 -58.84 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 1.17 Total: 17.78 kcal Atomic # 6 Polarization: -42.07 SS G_CDS: 2.97 Total: -39.10 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: -0.94 Total: -75.82 kcal Atomic # 8 Polarization: -112.47 SS G_CDS: -3.04 Total: -115.51 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.68 Total: -3.81 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 2.03 Total: 40.17 kcal Atomic # 16 Polarization: 117.74 SS G_CDS: -0.29 Total: 117.46 kcal Total: -61.41 2.58 -58.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051155833.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.088 kcal (2) G-P(sol) polarization free energy of solvation -61.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds