Wall clock time and date at job start Sat Apr 11 2020 02:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99971 * 2 1 4 4 H 1.48498 * 109.46991 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47122 * 119.99970 * 3 2 1 6 6 H 1.48504 * 109.47192 * 240.00049 * 3 2 1 7 7 C 1.38810 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00008 * 205.73413 * 7 2 1 9 9 N 1.36937 * 120.00031 * 25.72792 * 7 2 1 10 10 C 1.46493 * 120.00502 * 229.25568 * 9 7 2 11 11 C 1.53007 * 117.49565 * 13.32942 * 10 9 7 12 12 C 1.52999 * 59.99831 * 252.50742 * 11 10 9 13 13 S 1.65609 * 119.99679 * 49.26250 * 9 7 2 14 14 O 1.42098 * 106.39784 * 203.53673 * 13 9 7 15 15 O 1.42101 * 106.40283 * 336.45378 * 13 9 7 16 16 C 1.76197 * 107.21815 * 89.99743 * 13 9 7 17 17 C 1.38478 * 120.01424 * 354.11021 * 16 13 9 18 18 F 1.35099 * 120.02473 * 359.97438 * 17 16 13 19 19 C 1.38447 * 119.94407 * 179.70169 * 17 16 13 20 20 C 1.38212 * 119.97743 * 0.55157 * 19 17 16 21 21 C 1.38228 * 120.02202 * 359.74796 * 20 19 17 22 22 C 1.38180 * 120.01040 * 174.38466 * 16 13 9 23 23 N 1.48002 * 119.98892 * 0.02562 * 22 16 13 24 24 O 1.21794 * 120.00543 * 185.76974 * 23 22 16 25 25 O 1.21811 * 119.99683 * 5.77422 * 23 22 16 26 26 H 0.97000 * 120.00110 * 354.94268 * 1 2 3 27 27 H 1.09001 * 115.55199 * 159.03303 * 10 9 7 28 28 H 1.08992 * 117.49958 * 359.97438 * 11 10 9 29 29 H 1.09002 * 117.49386 * 145.02012 * 11 10 9 30 30 H 1.09004 * 117.50175 * 252.51022 * 12 11 10 31 31 H 1.09000 * 117.51494 * 107.48063 * 12 11 10 32 32 H 1.07997 * 120.00655 * 180.27757 * 19 17 16 33 33 H 1.08001 * 119.98991 * 179.77023 * 20 19 17 34 34 H 1.08003 * 119.97204 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0100 -1.2487 0.4056 9 7 1.4275 -2.3290 -0.5158 10 6 1.4359 -3.5755 0.2538 11 6 1.8215 -3.4904 1.7320 12 6 2.7917 -4.1072 0.7225 13 16 0.7132 -2.2828 -2.0093 14 8 -0.2360 -3.3401 -2.0329 15 8 0.3699 -0.9247 -2.2480 16 6 1.9508 -2.6986 -3.1924 17 6 3.2654 -2.8653 -2.7903 18 9 3.5998 -2.7087 -1.4908 19 6 4.2356 -3.1981 -3.7202 20 6 3.8933 -3.3524 -5.0503 21 6 2.5818 -3.1797 -5.4515 22 6 1.6109 -2.8530 -4.5229 23 7 0.2072 -2.6684 -4.9540 24 8 -0.1128 -2.9064 -6.1048 25 8 -0.6282 -2.2784 -4.1579 26 1 -0.4850 0.8368 0.0741 27 1 0.6784 -4.3070 -0.0278 28 1 2.0693 -2.5071 2.1317 29 1 1.3176 -4.1660 2.4232 30 1 2.9262 -5.1886 0.7496 31 1 3.6775 -3.5298 0.4579 32 1 5.2603 -3.3327 -3.4070 33 1 4.6506 -3.6084 -5.7765 34 1 2.3152 -3.3001 -6.4912 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299464876.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:26:08 Heat of formation + Delta-G solvation = -24.365181 kcal Electronic energy + Delta-G solvation = -28258.787155 eV Core-core repulsion = 24011.643192 eV Total energy + Delta-G solvation = -4247.143962 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.056 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.84571 -41.97665 -38.92744 -37.26972 -36.37864 -35.48838 -34.01220 -33.38403 -32.01045 -31.00333 -30.65363 -26.52760 -25.11371 -23.37177 -22.53217 -21.64639 -20.62961 -19.56556 -18.93170 -18.46217 -17.56167 -17.31689 -16.56548 -16.42518 -16.20715 -15.75006 -15.43611 -15.13829 -14.87480 -14.32133 -13.89751 -13.47264 -13.46852 -12.67862 -12.61466 -12.46394 -12.33952 -11.67296 -11.51433 -11.32413 -11.18197 -11.03517 -10.87823 -10.78765 -10.58769 -10.42838 -10.36329 -10.21869 -10.02258 -9.88608 -9.68776 -9.42383 -9.05690 -8.78504 -7.63502 -6.69943 -4.29452 -0.13484 0.71876 1.45804 1.48230 1.78264 3.10991 3.12382 3.19989 3.21218 3.97024 4.04731 4.24296 4.41485 4.58711 4.67658 4.71995 4.83941 4.97422 5.26206 5.47224 5.50108 5.62738 5.67734 5.73414 5.76090 5.80898 6.20691 6.24460 6.34090 6.41102 6.62051 6.72635 6.95356 7.22745 7.40046 7.85243 8.03302 8.70299 9.13984 10.33416 Molecular weight = 330.06amu Principal moments of inertia in cm(-1) A = 0.013092 B = 0.007336 C = 0.006649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.145164 B = 3815.915222 C = 4210.424862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.747 5.747 2 C 0.058 3.942 3 Si 0.925 3.075 4 H -0.277 1.277 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.256 4.256 8 H 0.089 0.911 9 N -0.772 5.772 10 C 0.093 3.907 11 C -0.161 4.161 12 C -0.214 4.214 13 S 2.511 3.489 14 O -0.995 6.995 15 O -0.925 6.925 16 C -0.637 4.637 17 C 0.189 3.811 18 F -0.089 7.089 19 C -0.130 4.130 20 C -0.071 4.071 21 C -0.091 4.091 22 C 0.053 3.947 23 N 0.016 4.984 24 O -0.150 6.150 25 O -0.131 6.131 26 H 0.287 0.713 27 H 0.121 0.879 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.154 0.846 33 H 0.155 0.845 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.857 -5.235 -3.447 12.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.164 4.164 3 Si 0.750 3.250 4 H -0.202 1.202 5 H -0.194 1.194 6 H -0.192 1.192 7 C -0.409 4.409 8 H 0.107 0.893 9 N -0.594 5.594 10 C -0.016 4.016 11 C -0.200 4.200 12 C -0.254 4.254 13 S 2.605 3.395 14 O -0.983 6.983 15 O -0.912 6.912 16 C -0.705 4.705 17 C 0.168 3.832 18 F -0.066 7.066 19 C -0.149 4.149 20 C -0.090 4.090 21 C -0.111 4.111 22 C -0.030 4.030 23 N 0.536 4.464 24 O -0.367 6.367 25 O -0.348 6.348 26 H 0.097 0.903 27 H 0.138 0.862 28 H 0.128 0.872 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.172 0.828 33 H 0.173 0.827 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 10.453 -5.255 -3.916 12.337 hybrid contribution 0.619 0.644 -0.454 1.002 sum 11.072 -4.610 -4.370 12.765 Atomic orbital electron populations 1.69823 1.07387 1.30458 1.30570 1.25821 0.95031 1.01117 0.94397 0.86015 0.79544 0.80300 0.79120 1.20223 1.19422 1.19238 1.19150 0.99571 0.85862 1.36326 0.89319 1.52778 1.72246 1.11853 1.22482 1.21397 0.96754 0.89015 0.94413 1.23092 1.02502 1.02777 0.91619 1.23451 0.96059 0.99334 1.06540 1.14478 0.78122 0.74538 0.72409 1.93296 1.60523 1.58223 1.86268 1.93402 1.80380 1.33643 1.83752 1.32833 1.17543 1.06897 1.13190 1.16797 0.90484 0.95740 0.80214 1.91752 1.92284 1.91603 1.30997 1.21689 1.00341 0.99600 0.93317 1.21055 0.95095 0.97208 0.95619 1.21108 0.92104 0.97501 1.00385 1.20259 0.81803 1.07104 0.93865 1.43766 1.03180 0.98591 1.00832 1.94437 1.85173 1.53436 1.03658 1.94647 1.44907 1.46476 1.48739 0.90265 0.86184 0.87228 0.89711 0.89953 0.88251 0.82822 0.82744 0.82575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -20.20 11.68 55.49 0.65 -19.56 16 2 C 0.06 1.44 3.97 -17.43 -0.07 1.37 16 3 Si 0.93 19.45 29.63 -169.99 -5.04 14.41 16 4 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.26 -6.07 6.04 -15.06 -0.09 -6.16 16 8 H 0.09 1.93 7.60 -52.49 -0.40 1.53 16 9 N -0.77 -18.44 1.58 -53.43 -0.08 -18.53 16 10 C 0.09 1.93 6.25 -67.93 -0.42 1.50 16 11 C -0.16 -2.82 9.86 -26.73 -0.26 -3.08 16 12 C -0.21 -3.55 9.28 -26.73 -0.25 -3.79 16 13 S 2.51 66.22 3.70 -107.50 -0.40 65.82 16 14 O -0.99 -28.28 15.07 -66.63 -1.00 -29.28 16 15 O -0.92 -27.12 13.01 -65.95 -0.86 -27.98 16 16 C -0.64 -13.97 5.83 -39.51 -0.23 -14.20 16 17 C 0.19 3.40 7.26 -39.42 -0.29 3.12 16 18 F -0.09 -1.62 10.34 2.25 0.02 -1.60 16 19 C -0.13 -1.68 10.03 -39.51 -0.40 -2.07 16 20 C -0.07 -0.81 10.04 -39.59 -0.40 -1.20 16 21 C -0.09 -1.34 9.56 -39.58 -0.38 -1.72 16 22 C 0.05 1.08 6.84 -79.97 -0.55 0.53 16 23 N 0.02 0.37 4.45 33.95 0.15 0.52 16 24 O -0.15 -3.07 18.46 -29.46 -0.54 -3.61 16 25 O -0.13 -3.49 13.79 -39.70 -0.55 -4.04 16 26 H 0.29 7.26 8.32 -40.82 -0.34 6.92 16 27 H 0.12 2.52 7.31 -51.93 -0.38 2.14 16 28 H 0.11 2.02 7.15 -51.93 -0.37 1.65 16 29 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.10 1.64 6.31 -51.93 -0.33 1.31 16 32 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.16 1.83 7.62 -52.48 -0.40 1.43 16 LS Contribution 304.70 15.07 4.59 4.59 Total: -1.00 -33.28 304.70 -9.09 -42.37 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -2.70 Total: 2.59 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -3.33 Total: -25.71 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.71 Total: -37.57 kcal Atomic # 8 Polarization: -61.96 SS G_CDS: -2.95 Total: -64.92 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.02 Total: -1.60 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.04 Total: 14.41 kcal Atomic # 16 Polarization: 66.22 SS G_CDS: -0.40 Total: 65.82 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.28 -9.09 -42.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299464876.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.008 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds