Wall clock time and date at job start Sat Apr 11 2020 02:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.39927 * 125.73924 * 2 1 4 4 C 1.30405 * 108.96557 * 179.97438 * 3 2 1 5 5 C 1.41380 * 108.03510 * 0.02562 * 4 3 2 6 6 C 1.47186 * 126.44036 * 179.97438 * 5 4 3 7 7 O 1.21538 * 119.99562 * 180.02562 * 6 5 4 8 8 O 1.34763 * 119.99864 * 0.02562 * 6 5 4 9 9 C 1.45201 * 116.99781 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47328 * 179.97438 * 9 8 6 11 11 C 1.53008 * 109.47052 * 299.99936 * 10 9 8 12 12 C 1.53000 * 109.47331 * 59.99993 * 10 9 8 13 13 C 1.50705 * 109.47459 * 180.02562 * 10 9 8 14 14 H 1.07997 * 119.99564 * 359.97438 * 13 10 9 15 15 C 1.37871 * 120.00296 * 179.97438 * 13 10 9 16 16 N 1.31521 * 119.99810 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 120.00259 * 179.97438 * 15 13 10 18 18 H 1.48488 * 109.46910 * 59.99879 * 17 15 13 19 19 H 1.48501 * 109.47024 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46872 * 299.99913 * 17 15 13 21 21 C 1.34295 * 125.74211 * 180.25153 * 2 1 3 22 22 Br 1.89107 * 126.31952 * 0.02562 * 21 2 1 23 23 H 1.09008 * 109.46864 * 90.02433 * 1 2 3 24 24 H 1.08997 * 109.47099 * 210.02243 * 1 2 3 25 25 H 1.08994 * 109.47113 * 330.02601 * 1 2 3 26 26 H 1.08001 * 125.97824 * 179.97438 * 4 3 2 27 27 H 1.09002 * 109.47361 * 299.99673 * 9 8 6 28 28 H 1.09007 * 109.47202 * 59.99419 * 9 8 6 29 29 H 1.08994 * 109.47010 * 60.00110 * 11 10 9 30 30 H 1.09006 * 109.47081 * 179.97438 * 11 10 9 31 31 H 1.08994 * 109.46983 * 299.99658 * 11 10 9 32 32 H 1.08999 * 109.47156 * 59.99837 * 12 10 9 33 33 H 1.08993 * 109.47497 * 180.02562 * 12 10 9 34 34 H 1.09003 * 109.46651 * 299.99861 * 12 10 9 35 35 H 0.97004 * 119.99864 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2823 1.1358 0.0000 4 6 3.5309 0.7594 0.0006 5 6 3.5620 -0.6540 0.0003 6 6 4.7650 -1.5020 0.0003 7 8 4.6552 -2.7124 -0.0004 8 8 5.9882 -0.9363 0.0009 9 6 7.1296 -1.8338 0.0002 10 6 8.4221 -1.0152 0.0005 11 6 8.4668 -0.1323 -1.2483 12 6 8.4673 -0.1337 1.2502 13 6 9.6068 -1.9467 -0.0009 14 1 9.4531 -3.0157 -0.0014 15 6 10.8867 -1.4343 -0.0014 16 7 11.0738 -0.1325 -0.0013 17 14 12.3551 -2.5890 -0.0024 18 1 12.3109 -3.4449 -1.2150 19 1 13.6097 -1.7943 -0.0023 20 1 12.3121 -3.4454 1.2100 21 6 2.2495 -1.0900 -0.0048 22 35 1.6670 -2.8891 -0.0134 23 1 -0.3633 -0.0004 -1.0278 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3633 0.8902 0.5134 26 1 4.3906 1.4131 0.0003 27 1 7.0975 -2.4631 0.8896 28 1 7.0976 -2.4616 -0.8904 29 1 7.6101 0.5415 -1.2478 30 1 9.3875 0.4513 -1.2479 31 1 8.4347 -0.7603 -2.1386 32 1 8.4354 -0.7627 2.1398 33 1 9.3879 0.4498 1.2502 34 1 7.6105 0.5401 1.2507 35 1 11.9744 0.2281 -0.0021 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791880066.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:27:09 Heat of formation + Delta-G solvation = -5.262117 kcal Electronic energy + Delta-G solvation = -20286.344022 eV Core-core repulsion = 16947.017343 eV Total energy + Delta-G solvation = -3339.326678 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 330.037 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.61697 -39.44424 -36.43179 -34.74214 -33.90705 -32.30841 -31.22272 -29.66948 -27.67013 -25.65842 -25.56737 -25.05490 -22.97113 -21.29043 -20.07258 -18.77319 -17.97447 -16.31098 -16.26910 -15.80180 -15.50888 -15.43283 -14.71865 -14.56950 -13.56558 -13.34284 -13.13007 -12.96371 -12.74622 -12.72147 -11.86868 -11.59865 -11.54847 -11.40089 -11.11640 -10.90796 -10.71065 -10.61546 -10.36024 -10.15637 -9.89873 -9.82169 -9.68485 -9.35606 -9.26381 -8.94476 -8.71967 -8.33492 -5.98223 -4.09615 0.71853 0.94033 1.95565 2.08282 3.26922 3.32290 3.36052 3.36579 3.41505 4.16015 4.42497 4.65456 4.70097 4.93869 4.95255 5.04305 5.28138 5.62122 6.07845 6.16395 6.18078 6.21646 6.53454 6.79971 7.03700 7.11279 7.13872 7.19271 7.21120 7.45701 7.67242 7.73889 8.09979 8.20314 8.34480 8.44463 8.90147 9.55658 11.02878 Molecular weight = 330.04amu Principal moments of inertia in cm(-1) A = 0.026967 B = 0.003227 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.060739 B = 8673.760636 C = 9515.447589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.344 5.344 3 N -0.279 5.279 4 C 0.111 3.889 5 C -0.230 4.230 6 C 0.527 3.473 7 O -0.509 6.509 8 O -0.342 6.342 9 C 0.087 3.913 10 C 0.070 3.930 11 C -0.129 4.129 12 C -0.129 4.129 13 C -0.512 4.512 14 H 0.056 0.944 15 C 0.069 3.931 16 N -0.882 5.882 17 Si 0.895 3.105 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.128 3.872 22 Br 0.055 6.945 23 H 0.086 0.914 24 H 0.093 0.907 25 H 0.102 0.898 26 H 0.210 0.790 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.017 0.983 30 H 0.083 0.917 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.083 0.917 34 H 0.017 0.983 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.951 0.044 0.035 22.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.125 5.125 3 N -0.100 5.100 4 C -0.076 4.076 5 C -0.246 4.246 6 C 0.371 3.629 7 O -0.398 6.398 8 O -0.258 6.258 9 C 0.015 3.985 10 C 0.070 3.930 11 C -0.187 4.187 12 C -0.187 4.187 13 C -0.550 4.550 14 H 0.075 0.925 15 C -0.133 4.133 16 N -0.520 5.520 17 Si 0.723 3.277 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.083 4.083 22 Br 0.137 6.863 23 H 0.105 0.895 24 H 0.112 0.888 25 H 0.120 0.880 26 H 0.226 0.774 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.036 0.964 30 H 0.102 0.898 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.102 0.898 34 H 0.036 0.964 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.957 0.178 0.035 23.958 hybrid contribution 1.432 -1.093 -0.011 1.801 sum -22.525 -0.914 0.023 22.543 Atomic orbital electron populations 1.22138 0.72865 1.05537 1.04565 1.48515 1.07392 1.02313 1.54325 1.77330 1.02149 1.05743 1.24805 1.24353 0.95256 0.93501 0.94532 1.19298 0.90217 0.93871 1.21202 1.19753 0.83667 0.85940 0.73561 1.90851 1.87680 1.14810 1.46503 1.86551 1.14108 1.42313 1.82796 1.23677 0.82243 0.91939 1.00684 1.18244 0.87767 0.93225 0.93777 1.21766 1.01065 0.99017 0.96826 1.21763 1.01059 0.99016 0.96827 1.20908 0.89955 0.92499 1.51636 0.92549 1.24845 0.98627 0.95107 0.94724 1.69825 1.21533 1.10625 1.50059 0.86613 0.81706 0.80749 0.78667 1.20261 1.21258 1.20265 1.23256 0.92322 0.89030 1.03737 1.96895 1.88607 1.03661 1.97101 0.89515 0.88838 0.87973 0.77377 0.92464 0.92467 0.96401 0.89800 0.95853 0.95852 0.89817 0.96393 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.56 11.24 59.85 0.67 1.23 16 2 N -0.34 -3.91 3.98 -65.75 -0.26 -4.17 16 3 N -0.28 -3.62 12.49 30.87 0.39 -3.23 16 4 C 0.11 1.50 11.87 -16.96 -0.20 1.30 16 5 C -0.23 -3.57 6.13 -105.04 -0.64 -4.22 16 6 C 0.53 9.81 7.95 34.36 0.27 10.08 16 7 O -0.51 -10.24 15.13 -19.30 -0.29 -10.53 16 8 O -0.34 -6.87 8.73 -40.66 -0.35 -7.23 16 9 C 0.09 1.94 4.27 37.15 0.16 2.10 16 10 C 0.07 1.71 0.58 -155.66 -0.09 1.62 16 11 C -0.13 -3.09 8.11 37.16 0.30 -2.79 16 12 C -0.13 -3.09 8.11 37.16 0.30 -2.78 16 13 C -0.51 -13.67 8.01 -34.44 -0.28 -13.95 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.07 1.83 5.15 -17.82 -0.09 1.74 16 16 N -0.88 -23.92 9.35 55.43 0.52 -23.40 16 17 Si 0.89 20.86 29.54 -169.99 -5.02 15.83 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 C 0.13 1.70 7.42 -16.45 -0.12 1.58 16 22 Br 0.05 0.64 31.68 -68.01 -2.15 -1.51 16 23 H 0.09 0.41 8.14 -51.92 -0.42 -0.01 16 24 H 0.09 0.44 7.63 -51.93 -0.40 0.05 16 25 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.21 2.43 8.06 -52.49 -0.42 2.00 16 27 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 29 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 30 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 34 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 35 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 319.14 15.07 4.81 4.81 Total: -1.00 -30.12 319.14 -6.41 -36.53 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: -4.32 Total: -3.02 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 0.28 Total: -4.08 kcal Atomic # 7 Polarization: -31.45 SS G_CDS: 0.64 Total: -30.81 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.65 Total: -17.76 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 35 Polarization: 0.64 SS G_CDS: -2.15 Total: -1.51 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.12 -6.41 -36.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791880066.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.266 kcal (2) G-P(sol) polarization free energy of solvation -30.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds