Wall clock time and date at job start Sat Apr 11 2020 02:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47169 * 2 1 4 4 C 1.50706 * 109.46626 * 240.00825 * 2 1 3 5 5 H 1.07999 * 119.99433 * 239.99768 * 4 2 1 6 6 C 1.37871 * 120.00236 * 59.99711 * 4 2 1 7 7 N 1.31509 * 120.00376 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99846 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46988 * 60.00424 * 8 6 4 10 10 H 1.48503 * 109.47143 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47298 * 300.00042 * 8 6 4 12 12 N 1.46489 * 109.47367 * 120.00634 * 2 1 3 13 13 C 1.46504 * 120.00051 * 59.99646 * 12 2 1 14 14 S 1.65606 * 120.00129 * 239.99892 * 12 2 1 15 15 O 1.42105 * 106.40008 * 336.45751 * 14 12 2 16 16 O 1.42098 * 106.40370 * 203.53936 * 14 12 2 17 17 N 1.65595 * 107.22013 * 89.99663 * 14 12 2 18 18 C 1.46508 * 119.99876 * 65.00349 * 17 14 12 19 19 C 1.52991 * 109.47282 * 164.99994 * 18 17 14 20 20 H 1.09003 * 115.54922 * 330.67314 * 19 18 17 21 21 C 1.52994 * 117.50257 * 184.99905 * 19 18 17 22 22 C 1.53002 * 60.00193 * 252.51093 * 21 19 18 23 23 Cl 1.80297 * 117.49629 * 252.50784 * 22 21 19 24 24 Cl 1.80297 * 117.49957 * 107.48882 * 22 21 19 25 25 H 1.08997 * 109.47095 * 179.97438 * 1 2 3 26 26 H 1.09010 * 109.46956 * 299.99542 * 1 2 3 27 27 H 1.09001 * 109.47294 * 59.99252 * 1 2 3 28 28 H 0.96998 * 120.00587 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.47095 * 270.00091 * 13 12 2 30 30 H 1.08991 * 109.46942 * 30.00504 * 13 12 2 31 31 H 1.09009 * 109.46796 * 150.00143 * 13 12 2 32 32 H 0.96997 * 120.00034 * 245.00377 * 17 14 12 33 33 H 1.09006 * 109.46715 * 285.00199 * 18 17 14 34 34 H 1.08993 * 109.46869 * 44.99478 * 18 17 14 35 35 H 1.09007 * 117.49637 * 0.02562 * 21 19 18 36 36 H 1.08998 * 117.50234 * 145.01809 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2307 5 1 2.6531 -1.5884 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9434 0.8304 -2.6034 8 14 2.3222 -1.1192 -4.0081 9 1 1.8277 -2.5194 -4.0084 10 1 1.8276 -0.4188 -5.2206 11 1 3.8072 -1.1186 -4.0080 12 7 2.0184 -0.6907 1.1960 13 6 1.6644 -2.0933 1.4277 14 16 2.9705 0.1140 2.2861 15 8 3.5795 1.1828 1.5748 16 8 3.7119 -0.8791 2.9812 17 7 1.9609 0.8088 3.3998 18 6 1.1512 -0.0356 4.2817 19 6 0.6090 0.8070 5.4379 20 1 1.2295 1.6527 5.7346 21 6 -0.1683 0.0809 6.5375 22 6 -0.9085 0.9737 5.5396 23 17 -1.5340 2.5541 6.1412 24 17 -1.9210 0.1620 4.2879 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 0.7093 1.1621 -3.4843 29 1 0.7376 -2.1445 1.9991 30 1 1.5295 -2.5968 0.4706 31 1 2.4630 -2.5820 1.9861 32 1 1.9057 1.7748 3.4682 33 1 0.3190 -0.4570 3.7177 34 1 1.7672 -0.8427 4.6780 35 1 -0.2930 -0.9974 6.4375 36 1 -0.0595 0.4488 7.5577 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800898266.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:27:25 Heat of formation + Delta-G solvation = -60.476419 kcal Electronic energy + Delta-G solvation = -22757.598350 eV Core-core repulsion = 19070.625107 eV Total energy + Delta-G solvation = -3686.973243 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 330.036 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.69696 -36.70888 -36.30349 -36.16709 -36.02876 -35.26141 -33.98938 -32.57279 -29.09434 -26.54579 -25.49379 -25.15501 -22.70116 -21.37860 -20.74718 -18.79566 -17.39500 -17.28113 -16.87126 -16.29299 -15.53225 -15.45021 -14.87697 -14.36003 -14.22643 -13.45133 -13.31726 -13.02033 -12.91133 -12.69072 -12.23214 -12.20664 -12.01097 -11.83786 -11.53814 -11.50561 -11.36117 -11.32387 -11.21613 -11.12525 -10.90302 -10.82725 -10.74648 -10.47949 -10.20884 -10.07631 -10.02271 -9.36556 -9.25631 -8.44244 -7.98556 -6.06249 -4.13082 0.92622 1.16686 1.90100 2.80729 3.30719 3.35358 3.37304 3.41900 3.76517 3.98444 4.12426 4.40702 4.49601 4.80791 4.99004 5.10580 5.22464 5.25370 5.36258 5.57592 5.71760 5.92334 6.08746 6.33745 6.66976 6.81265 6.85167 7.04256 7.09968 7.48420 7.63720 7.80270 8.06151 8.28469 8.88454 9.52515 10.99340 Molecular weight = 330.04amu Principal moments of inertia in cm(-1) A = 0.017430 B = 0.003940 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.062237 B = 7105.054659 C = 7841.024313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.269 3.731 3 H 0.059 0.941 4 C -0.522 4.522 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.987 5.987 13 C 0.095 3.905 14 S 2.780 3.220 15 O -0.971 6.971 16 O -0.997 6.997 17 N -1.131 6.131 18 C 0.141 3.859 19 C -0.122 4.122 20 H 0.137 0.863 21 C -0.136 4.136 22 C -0.004 4.004 23 Cl -0.096 7.096 24 Cl -0.077 7.077 25 H 0.031 0.969 26 H 0.011 0.989 27 H 0.091 0.909 28 H 0.264 0.736 29 H 0.036 0.964 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.414 0.586 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.125 0.875 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.247 -1.095 18.740 19.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.166 3.834 3 H 0.076 0.924 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.830 5.830 13 C -0.052 4.052 14 S 2.788 3.212 15 O -0.955 6.955 16 O -0.980 6.980 17 N -0.890 5.890 18 C 0.014 3.986 19 C -0.142 4.142 20 H 0.155 0.845 21 C -0.175 4.175 22 C -0.056 4.056 23 Cl -0.069 7.069 24 Cl -0.050 7.050 25 H 0.050 0.950 26 H 0.030 0.970 27 H 0.110 0.890 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.247 0.753 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.143 0.857 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.495 -1.065 18.522 19.090 hybrid contribution -0.495 0.127 -0.899 1.034 sum -4.990 -0.938 17.623 18.340 Atomic orbital electron populations 1.22093 0.98145 0.99655 1.00605 1.18724 0.91325 0.92975 0.80351 0.92377 1.21291 1.31702 1.13067 0.90077 0.91969 1.24895 0.94937 0.94999 0.98963 1.69847 1.36429 1.22616 1.23884 0.86565 0.79346 0.79561 0.81963 1.20259 1.21235 1.20164 1.57635 1.69850 1.19800 1.35705 1.21334 0.98611 0.82446 1.02794 1.01935 0.73605 0.73188 0.72448 1.93625 1.74276 1.55950 1.71695 1.93523 1.69213 1.60713 1.74556 1.56223 1.62277 1.17372 1.53118 1.20963 0.95795 0.92409 0.89459 1.23480 0.89871 1.02549 0.98316 0.84529 1.24009 0.97255 0.99974 0.96217 1.26893 0.92084 0.88666 0.97944 1.98753 1.89121 1.31219 1.87759 1.98775 1.71437 1.78823 1.55976 0.94961 0.96974 0.89037 0.92645 0.94568 0.89746 0.91887 0.75336 0.90122 0.89017 0.85710 0.85809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 8.97 37.16 0.33 -2.95 16 2 C 0.27 6.49 2.62 -69.08 -0.18 6.31 16 3 H 0.06 1.56 6.91 -51.93 -0.36 1.20 16 4 C -0.52 -13.89 7.99 -34.44 -0.28 -14.16 16 5 H 0.06 1.64 7.33 -52.49 -0.38 1.25 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.69 11.32 55.43 0.63 -24.06 16 8 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.99 -19.82 3.12 -115.85 -0.36 -20.18 16 13 C 0.09 1.62 9.66 59.85 0.58 2.19 16 14 S 2.78 52.16 6.14 -107.50 -0.66 51.50 16 15 O -0.97 -22.10 16.70 -57.17 -0.95 -23.05 16 16 O -1.00 -19.58 16.21 -57.17 -0.93 -20.51 16 17 N -1.13 -15.57 6.05 -10.61 -0.06 -15.64 16 18 C 0.14 1.57 6.44 -4.04 -0.03 1.54 16 19 C -0.12 -1.05 5.67 -90.63 -0.51 -1.56 16 20 H 0.14 1.03 8.14 -51.93 -0.42 0.60 16 21 C -0.14 -0.88 9.93 -26.73 -0.27 -1.15 16 22 C 0.00 -0.04 3.62 -26.73 -0.10 -0.14 16 23 Cl -0.10 -0.93 29.29 -51.86 -1.52 -2.45 16 24 Cl -0.08 -0.87 27.27 -51.86 -1.41 -2.29 16 25 H 0.03 0.69 7.67 -51.93 -0.40 0.29 16 26 H 0.01 0.23 8.14 -51.92 -0.42 -0.19 16 27 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 1.53 7.02 -51.93 -0.36 1.17 16 31 H 0.06 1.00 7.02 -51.92 -0.36 0.63 16 32 H 0.41 5.01 8.65 -34.47 -0.30 4.72 16 33 H 0.08 0.95 6.06 -51.93 -0.31 0.63 16 34 H 0.09 0.96 7.75 -51.93 -0.40 0.55 16 35 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 340.67 15.07 5.13 5.13 Total: -1.00 -31.93 340.67 -10.15 -42.08 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -4.45 Total: 1.71 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -0.54 Total: -8.26 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: 0.20 Total: -59.87 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: -1.88 Total: -43.56 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 52.16 SS G_CDS: -0.66 Total: 51.50 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -2.93 Total: -4.73 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.93 -10.15 -42.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800898266.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.395 kcal (2) G-P(sol) polarization free energy of solvation -31.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds