Wall clock time and date at job start Sat Apr 11 2020 02:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46748 * 2 1 4 4 C 1.50703 * 109.46845 * 119.99620 * 2 1 3 5 5 H 1.07999 * 119.99803 * 119.99749 * 4 2 1 6 6 C 1.37875 * 120.00142 * 300.00313 * 4 2 1 7 7 N 1.31510 * 119.99881 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47054 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47211 * 119.99707 * 8 6 4 11 11 H 1.48500 * 109.47015 * 239.99831 * 8 6 4 12 12 N 1.46496 * 109.47112 * 239.99919 * 2 1 3 13 13 C 1.46506 * 119.99759 * 299.99885 * 12 2 1 14 14 S 1.65599 * 120.00096 * 120.00384 * 12 2 1 15 15 O 1.42101 * 106.40069 * 23.53574 * 14 12 2 16 16 O 1.42101 * 106.40241 * 156.45778 * 14 12 2 17 17 N 1.65604 * 107.21451 * 269.99597 * 14 12 2 18 18 C 1.46501 * 120.00036 * 65.00556 * 17 14 12 19 19 C 1.52992 * 109.47231 * 164.99820 * 18 17 14 20 20 H 1.09004 * 115.54808 * 330.66264 * 19 18 17 21 21 C 1.53004 * 117.49706 * 184.99948 * 19 18 17 22 22 C 1.52996 * 117.50215 * 116.37675 * 19 18 17 23 23 Cl 1.80307 * 117.49911 * 214.97879 * 22 19 18 24 24 Cl 1.80300 * 117.49787 * 359.97438 * 22 19 18 25 25 H 1.08998 * 109.47223 * 300.00224 * 1 2 3 26 26 H 1.09001 * 109.47080 * 60.00198 * 1 2 3 27 27 H 1.08993 * 109.47250 * 179.97438 * 1 2 3 28 28 H 0.97007 * 119.99999 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.47060 * 90.00688 * 13 12 2 30 30 H 1.09004 * 109.47073 * 210.00177 * 13 12 2 31 31 H 1.09000 * 109.47212 * 330.00260 * 13 12 2 32 32 H 0.96996 * 119.99918 * 244.99766 * 17 14 12 33 33 H 1.09002 * 109.46832 * 284.99632 * 18 17 14 34 34 H 1.09004 * 109.47254 * 44.99070 * 18 17 14 35 35 H 1.08996 * 117.49943 * 359.97438 * 21 19 18 36 36 H 1.08998 * 117.49831 * 145.02185 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3224 -1.1194 4.0080 9 1 3.1473 -2.2862 3.6039 10 1 3.1471 -0.1856 4.8161 11 1 1.1676 -1.5865 4.8166 12 7 2.0183 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 16 2.9705 0.1141 -2.2862 15 8 3.5794 1.1829 -1.5747 16 8 3.7119 -0.8790 -2.9813 17 7 1.9607 0.8089 -3.3998 18 6 1.0292 1.8618 -2.9876 19 6 0.4947 2.5835 -4.2262 20 1 1.1680 2.6080 -5.0831 21 6 -0.4072 3.7988 -4.0014 22 6 -1.0057 2.4852 -4.5087 23 17 -1.5254 2.4185 -6.2339 24 17 -2.0087 1.5272 -3.3567 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7087 1.1615 3.4844 29 1 0.7376 -2.1445 -1.9993 30 1 2.4629 -2.5820 -1.9862 31 1 1.5294 -2.5969 -0.4707 32 1 1.9862 0.5188 -4.3250 33 1 0.1985 1.4176 -2.4391 34 1 1.5476 2.5751 -2.3467 35 1 -0.6202 4.0839 -2.9712 36 1 -0.3277 4.6226 -4.7107 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800898273.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:27:27 Heat of formation + Delta-G solvation = -60.524705 kcal Electronic energy + Delta-G solvation = -22931.040990 eV Core-core repulsion = 19244.065653 eV Total energy + Delta-G solvation = -3686.975337 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 330.036 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.61347 -36.72540 -36.26215 -36.15963 -35.97079 -35.25130 -33.93872 -32.58575 -29.12057 -26.45816 -25.50818 -25.19813 -22.60682 -21.26638 -20.78411 -18.79937 -17.40049 -17.24974 -16.78745 -16.25459 -15.63508 -15.28239 -14.87760 -14.31027 -14.17931 -13.47370 -13.27856 -12.96854 -12.86189 -12.67542 -12.22550 -12.11114 -12.02734 -11.79589 -11.54540 -11.44163 -11.39653 -11.28217 -11.21620 -11.05899 -10.90976 -10.84051 -10.66913 -10.43329 -10.23538 -10.08332 -9.97207 -9.29473 -9.26326 -8.47105 -7.99032 -6.09504 -4.15470 0.97220 1.16962 1.97135 2.89389 3.26790 3.35180 3.38802 3.44847 3.85650 4.03252 4.16936 4.38699 4.60403 4.87983 5.02509 5.22367 5.22689 5.38532 5.54475 5.62962 5.79591 5.98890 6.14903 6.36588 6.65706 6.78600 6.83246 6.99523 7.10376 7.46934 7.61182 7.77272 8.02837 8.25676 8.86688 9.50353 10.96229 Molecular weight = 330.04amu Principal moments of inertia in cm(-1) A = 0.016254 B = 0.004252 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.229827 B = 6583.400589 C = 7462.099975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.267 3.733 3 H 0.058 0.942 4 C -0.519 4.519 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.988 5.988 13 C 0.098 3.902 14 S 2.780 3.220 15 O -0.973 6.973 16 O -0.995 6.995 17 N -1.132 6.132 18 C 0.135 3.865 19 C -0.121 4.121 20 H 0.135 0.865 21 C -0.136 4.136 22 C -0.006 4.006 23 Cl -0.100 7.100 24 Cl -0.076 7.076 25 H 0.092 0.908 26 H 0.012 0.988 27 H 0.032 0.968 28 H 0.262 0.738 29 H 0.037 0.963 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.410 0.590 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.128 0.872 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.639 4.507 -14.815 16.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.164 3.836 3 H 0.076 0.924 4 C -0.559 4.559 5 H 0.082 0.918 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.831 5.831 13 C -0.049 4.049 14 S 2.788 3.212 15 O -0.957 6.957 16 O -0.980 6.980 17 N -0.891 5.891 18 C 0.008 3.992 19 C -0.141 4.141 20 H 0.153 0.847 21 C -0.174 4.174 22 C -0.057 4.057 23 Cl -0.073 7.073 24 Cl -0.049 7.049 25 H 0.111 0.889 26 H 0.031 0.969 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.243 0.757 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.146 0.854 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.889 4.661 -14.509 16.005 hybrid contribution -0.432 -0.705 0.330 0.890 sum -5.321 3.956 -14.180 15.653 Atomic orbital electron populations 1.22162 0.98193 0.99876 1.00510 1.18749 0.91292 0.92980 0.80608 0.92407 1.21366 1.31498 1.13019 0.90023 0.91848 1.24890 0.94939 0.95004 0.98972 1.69859 1.36595 1.22699 1.23670 0.86456 0.78605 0.79698 0.82744 1.19734 1.20901 1.21027 1.57636 1.69915 1.19990 1.35589 1.21293 0.98790 0.82175 1.02626 1.01937 0.73529 0.73205 0.72499 1.93600 1.73834 1.55922 1.72300 1.93542 1.69652 1.60001 1.74765 1.56187 1.57134 1.51516 1.24214 1.21119 0.94075 0.89909 0.94069 1.23479 0.89626 0.99245 1.01751 0.84676 1.24028 0.97627 0.90873 1.04867 1.26951 0.94496 1.02448 0.81812 1.98744 1.92208 1.98609 1.17768 1.98779 1.71847 1.74456 1.59786 0.88935 0.96898 0.94844 0.92767 0.94404 0.91962 0.89842 0.75743 0.89337 0.88604 0.85431 0.85810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 8.97 37.16 0.33 -2.88 16 2 C 0.27 6.25 2.62 -69.08 -0.18 6.07 16 3 H 0.06 1.49 6.91 -51.93 -0.36 1.13 16 4 C -0.52 -13.63 7.99 -34.44 -0.28 -13.91 16 5 H 0.06 1.67 7.33 -52.49 -0.38 1.28 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.07 11.32 55.43 0.63 -23.44 16 8 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.99 -19.84 3.12 -115.84 -0.36 -20.20 16 13 C 0.10 1.71 9.65 59.85 0.58 2.29 16 14 S 2.78 52.25 6.14 -107.50 -0.66 51.59 16 15 O -0.97 -21.72 16.17 -57.17 -0.92 -22.65 16 16 O -1.00 -20.03 16.74 -57.17 -0.96 -20.98 16 17 N -1.13 -15.66 6.05 -10.61 -0.06 -15.72 16 18 C 0.13 1.75 6.44 -4.05 -0.03 1.72 16 19 C -0.12 -1.16 5.67 -90.62 -0.51 -1.67 16 20 H 0.14 1.09 8.14 -51.93 -0.42 0.66 16 21 C -0.14 -1.09 9.94 -26.73 -0.27 -1.35 16 22 C -0.01 -0.06 3.62 -26.73 -0.10 -0.15 16 23 Cl -0.10 -0.98 29.29 -51.86 -1.52 -2.50 16 24 Cl -0.08 -0.92 27.27 -51.86 -1.41 -2.34 16 25 H 0.09 2.24 6.07 -51.93 -0.32 1.93 16 26 H 0.01 0.23 6.18 -51.93 -0.32 -0.09 16 27 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 28 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 1.03 7.02 -51.93 -0.36 0.67 16 31 H 0.08 1.54 7.02 -51.93 -0.36 1.17 16 32 H 0.41 4.58 8.65 -34.47 -0.30 4.28 16 33 H 0.09 1.25 4.10 -51.93 -0.21 1.04 16 34 H 0.10 1.32 7.75 -51.93 -0.40 0.91 16 35 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.12 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 336.75 15.07 5.07 5.07 Total: -1.00 -31.07 336.75 -10.01 -41.07 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -4.25 Total: 2.57 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -0.54 Total: -8.27 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: 0.20 Total: -59.36 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -1.88 Total: -43.63 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 52.25 SS G_CDS: -0.66 Total: 51.59 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -2.93 Total: -4.83 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.07 -10.01 -41.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800898273.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.450 kcal (2) G-P(sol) polarization free energy of solvation -31.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds