Wall clock time and date at job start Sat Apr 11 2020 02:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47112 * 60.00201 * 9 7 5 11 11 H 1.48503 * 109.47000 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46939 * 299.99464 * 9 7 5 13 13 O 1.45198 * 109.46884 * 294.99515 * 3 2 1 14 14 C 1.34774 * 116.99854 * 90.00362 * 13 3 2 15 15 O 1.21533 * 119.99975 * 359.97438 * 14 13 3 16 16 C 1.47187 * 120.00121 * 179.97438 * 14 13 3 17 17 C 1.41379 * 126.44052 * 89.71233 * 16 14 13 18 18 C 1.50701 * 125.98354 * 359.97438 * 17 16 14 19 19 N 1.30409 * 108.03470 * 179.82107 * 17 16 14 20 20 N 1.39928 * 108.96088 * 0.44229 * 19 17 16 21 21 C 1.46506 * 125.73415 * 179.73733 * 20 19 17 22 22 C 1.34299 * 108.52050 * 359.71702 * 20 19 17 23 23 Br 1.89098 * 126.31361 * 179.97438 * 22 20 19 24 24 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 25 25 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 26 26 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 27 27 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 28 28 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 29 29 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.46606 * 90.00370 * 18 17 16 31 31 H 1.09001 * 109.47261 * 210.00001 * 18 17 16 32 32 H 1.09000 * 109.47140 * 330.00612 * 18 17 16 33 33 H 1.09000 * 109.47029 * 269.97378 * 21 20 19 34 34 H 1.08995 * 109.47464 * 29.97421 * 21 20 19 35 35 H 1.09000 * 109.46448 * 149.98171 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.5004 2.2801 1.3808 11 1 6.3978 0.2170 2.6505 12 1 6.5966 0.1453 0.2344 13 8 1.6559 2.0916 -1.2407 14 6 0.4679 2.7279 -1.2561 15 8 -0.2281 2.7395 -0.2599 16 6 0.0135 3.4087 -2.4794 17 6 -0.7494 2.8381 -3.5240 18 6 -1.2445 1.4160 -3.5840 19 7 -0.9523 3.7587 -4.4251 20 7 -0.3306 4.9428 -4.0134 21 6 -0.3231 6.2072 -4.7533 22 6 0.2576 4.7251 -2.8259 23 35 1.2391 5.9860 -1.8145 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8293 -0.0608 2.9500 30 1 -2.2290 1.3543 -3.1202 31 1 -1.3125 1.0985 -4.6245 32 1 -0.5503 0.7668 -3.0505 33 1 0.5415 6.2350 -5.4165 34 1 -1.2361 6.2886 -5.3431 35 1 -0.2690 7.0388 -4.0507 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000802218663.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:27:36 Heat of formation + Delta-G solvation = -13.016665 kcal Electronic energy + Delta-G solvation = -20806.065959 eV Core-core repulsion = 17466.403018 eV Total energy + Delta-G solvation = -3339.662941 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 330.037 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.47490 -39.21450 -35.66899 -34.33705 -33.43811 -32.20745 -31.31931 -29.91054 -29.38873 -27.24900 -26.07152 -23.49711 -22.44586 -20.48428 -20.10649 -19.32856 -17.54601 -16.60058 -16.38648 -15.86706 -15.30771 -15.07515 -14.48454 -14.14252 -13.66202 -13.45831 -13.01046 -12.88292 -12.63361 -12.51788 -12.27978 -12.03312 -11.42061 -11.36241 -11.23264 -11.16490 -11.12013 -10.91355 -10.62739 -10.50567 -10.26994 -9.78692 -9.65613 -9.35841 -9.29813 -8.78323 -8.63053 -8.41291 -6.14861 -4.21353 0.89258 1.31081 2.24829 2.32082 2.85384 3.28541 3.32100 3.34684 3.76154 4.26298 4.41326 4.70025 4.85426 4.99611 5.11470 5.16903 5.30775 5.62494 5.71287 5.75551 5.91992 6.26004 6.27244 6.36182 6.45475 6.51225 6.90616 6.99394 7.20629 7.26434 7.35761 7.64848 7.77272 7.96254 8.19234 8.66220 8.92653 9.43381 10.91901 Molecular weight = 330.04amu Principal moments of inertia in cm(-1) A = 0.015154 B = 0.005084 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.226370 B = 5505.662890 C = 6725.427718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C 0.220 3.780 4 H 0.048 0.952 5 C -0.519 4.519 6 H 0.068 0.932 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.909 3.091 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.343 6.343 14 C 0.533 3.467 15 O -0.499 6.499 16 C -0.206 4.206 17 C 0.120 3.880 18 C -0.080 4.080 19 N -0.275 5.275 20 N -0.346 5.346 21 C 0.093 3.907 22 C 0.106 3.894 23 Br 0.043 6.957 24 H 0.053 0.947 25 H 0.033 0.967 26 H 0.034 0.966 27 H 0.042 0.958 28 H 0.109 0.891 29 H 0.266 0.734 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.265 10.604 -12.249 17.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.557 4.557 6 H 0.086 0.914 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.736 3.264 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.199 1.199 13 O -0.259 6.259 14 C 0.374 3.626 15 O -0.388 6.388 16 C -0.222 4.222 17 C -0.046 4.046 18 C -0.139 4.139 19 N -0.099 5.099 20 N -0.128 5.128 21 C -0.048 4.048 22 C -0.102 4.102 23 Br 0.125 6.875 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.127 0.873 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.117 0.883 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.589 11.359 -12.574 18.567 hybrid contribution 1.102 -0.279 0.745 1.359 sum -6.487 11.079 -11.830 17.458 Atomic orbital electron populations 1.21906 0.98375 0.99081 1.00890 1.22028 0.92657 0.99305 1.03437 1.20726 0.95064 0.88793 0.78619 0.93406 1.20990 0.89616 1.38892 1.06199 0.91384 1.24857 0.99067 0.94816 0.95068 1.69883 1.35373 1.37854 1.09462 0.86372 0.84095 0.78469 0.77445 1.20034 1.21051 1.19949 1.86646 1.33212 1.62040 1.44006 1.19708 0.80978 0.76377 0.85552 1.90809 1.55525 1.58027 1.34392 1.19453 1.10802 0.92372 0.99557 1.22360 0.95636 0.96810 0.89792 1.20375 1.02263 0.87253 1.03978 1.77145 1.19762 0.90585 1.22423 1.48216 1.39832 1.10897 1.13863 1.22082 1.05047 0.80419 0.97248 1.23112 1.01044 0.95610 0.90475 1.96890 1.69618 1.52927 1.68064 0.92759 0.94813 0.94702 0.93895 0.87277 0.92376 0.89604 0.89926 0.89404 0.89655 0.88279 0.88966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 8.56 37.16 0.32 -2.81 16 2 C -0.14 -3.35 5.49 -26.73 -0.15 -3.50 16 3 C 0.22 5.86 2.25 -27.88 -0.06 5.80 16 4 H 0.05 1.41 7.16 -51.93 -0.37 1.03 16 5 C -0.52 -14.49 8.90 -34.44 -0.31 -14.80 16 6 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 7 C 0.06 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -24.89 11.30 55.43 0.63 -24.26 16 9 Si 0.91 21.01 29.54 -169.99 -5.02 15.99 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 13 O -0.34 -8.39 9.82 -40.69 -0.40 -8.79 16 14 C 0.53 11.78 5.73 34.36 0.20 11.98 16 15 O -0.50 -11.98 14.29 -19.29 -0.28 -12.26 16 16 C -0.21 -3.86 6.01 -105.05 -0.63 -4.49 16 17 C 0.12 1.96 7.27 -82.00 -0.60 1.36 16 18 C -0.08 -1.05 10.28 36.01 0.37 -0.68 16 19 N -0.28 -4.19 12.49 33.91 0.42 -3.76 16 20 N -0.35 -4.77 3.98 -65.76 -0.26 -5.03 16 21 C 0.09 0.76 11.24 59.85 0.67 1.44 16 22 C 0.11 1.72 7.42 -16.45 -0.12 1.60 16 23 Br 0.04 0.62 33.11 -68.01 -2.25 -1.63 16 24 H 0.05 1.23 7.79 -51.93 -0.40 0.83 16 25 H 0.03 0.69 5.24 -51.93 -0.27 0.41 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.11 2.91 5.95 -51.93 -0.31 2.60 16 29 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.09 1.25 7.19 -51.93 -0.37 0.87 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.62 7.62 -51.93 -0.40 0.22 16 LS Contribution 320.21 15.07 4.83 4.83 Total: -1.00 -31.82 320.21 -6.94 -38.76 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -4.21 Total: -1.39 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -0.40 Total: -2.45 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.79 Total: -33.06 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.68 Total: -21.05 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 35 Polarization: 0.62 SS G_CDS: -2.25 Total: -1.63 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.82 -6.94 -38.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802218663.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.745 kcal (2) G-P(sol) polarization free energy of solvation -31.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds