Wall clock time and date at job start Sat Apr 11 2020 02:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34813 * 117.00065 * 2 1 4 4 O 1.21547 * 120.00136 * 359.97438 * 3 2 1 5 5 C 1.47047 * 120.00202 * 179.97438 * 3 2 1 6 6 C 1.36707 * 125.16252 * 179.97438 * 5 3 2 7 7 C 1.36744 * 114.74029 * 180.02562 * 6 5 3 8 8 C 1.36705 * 114.74349 * 359.97438 * 7 6 5 9 9 C 1.47047 * 125.16013 * 180.02562 * 8 7 6 10 10 O 1.21535 * 119.99903 * 359.97438 * 9 8 7 11 11 O 1.34821 * 119.99994 * 180.02562 * 9 8 7 12 12 C 1.45198 * 117.00002 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.46884 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 11 15 15 S 1.81002 * 109.47152 * 179.97438 * 14 13 12 16 16 C 1.76198 * 100.00092 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99945 * 359.97438 * 16 15 14 18 18 C 1.38802 * 120.00251 * 180.02562 * 16 15 14 19 19 N 1.31634 * 119.99707 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00286 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47218 * 59.99235 * 20 18 16 22 22 H 1.48496 * 109.47281 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46713 * 299.99590 * 20 18 16 24 24 S 1.75830 * 109.67806 * 0.26597 * 8 7 6 25 25 H 1.09004 * 109.47259 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47512 * 299.99781 * 1 2 3 27 27 H 1.09005 * 109.47300 * 60.00085 * 1 2 3 28 28 H 1.07992 * 122.62511 * 359.97438 * 6 5 3 29 29 H 1.08002 * 122.62935 * 180.02562 * 7 6 5 30 30 H 1.09002 * 109.47379 * 59.99510 * 12 11 9 31 31 H 1.09001 * 109.46782 * 299.99594 * 12 11 9 32 32 H 1.09001 * 109.47194 * 299.99482 * 13 12 11 33 33 H 1.08992 * 109.47399 * 59.99654 * 13 12 11 34 34 H 1.09001 * 109.47109 * 299.99380 * 14 13 12 35 35 H 1.09002 * 109.47508 * 59.99571 * 14 13 12 36 36 H 0.96996 * 119.99880 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0640 1.2012 0.0000 4 8 1.4020 2.2206 -0.0005 5 6 3.5325 1.2782 0.0006 6 6 4.2601 2.4355 0.0001 7 6 5.6161 2.2589 0.0003 8 6 6.0232 0.9538 0.0014 9 6 7.4230 0.5034 0.0023 10 8 8.3238 1.3192 0.0016 11 8 7.7070 -0.8146 0.0028 12 6 9.1106 -1.1864 0.0031 13 6 9.2341 -2.7114 0.0044 14 6 10.7131 -3.1032 0.0053 15 16 10.8593 -4.9073 0.0076 16 6 12.6136 -5.0721 0.0076 17 1 13.2387 -4.1914 0.0060 18 6 13.1922 -6.3338 0.0086 19 7 12.4302 -7.4072 0.0100 20 14 15.0519 -6.5085 0.0093 21 1 15.6099 -5.8569 1.2215 22 1 15.4138 -7.9487 0.0109 23 1 15.6105 -5.8586 -1.2035 24 16 4.6190 -0.1044 -0.0054 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 3.8001 3.4125 -0.0011 29 1 6.3111 3.0856 0.0004 30 1 9.5933 -0.7823 0.8930 31 1 9.5934 -0.7831 -0.8870 32 1 8.7514 -3.1143 0.8947 33 1 8.7513 -3.1158 -0.8852 34 1 11.1963 -2.7003 -0.8848 35 1 11.1956 -2.6988 0.8952 36 1 12.8345 -8.2889 0.0111 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805361189.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:27:53 Heat of formation + Delta-G solvation = -144.984103 kcal Electronic energy + Delta-G solvation = -21326.895109 eV Core-core repulsion = 17608.441143 eV Total energy + Delta-G solvation = -3718.453966 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.047 amu Computer time = 4.87 seconds Orbital eigenvalues (eV) -40.87343 -40.57540 -38.22344 -36.95633 -36.57586 -33.60992 -32.46694 -31.18502 -28.59319 -27.07691 -25.93089 -25.35814 -22.77348 -22.24139 -21.41561 -19.59786 -19.38655 -17.99643 -17.47901 -17.39529 -16.94288 -16.77493 -16.28287 -16.22544 -14.84895 -14.84786 -14.80554 -14.30618 -14.08268 -13.79813 -13.43750 -13.29221 -13.03052 -12.84538 -12.73845 -12.58845 -12.16217 -11.61071 -11.40643 -11.35737 -11.22333 -11.20637 -11.03535 -11.01862 -10.86104 -10.69131 -10.39369 -9.68411 -9.57333 -9.18940 -9.09133 -8.39503 -6.59455 -6.26932 -3.98402 -0.61910 0.73496 1.20326 1.31626 2.04264 2.21079 2.25520 2.52367 3.19407 3.21450 3.26060 3.49237 4.17713 4.20548 4.42148 4.51978 4.61473 4.70250 4.71451 5.02606 5.03413 5.07570 5.09602 5.27834 5.31470 5.37538 5.43028 5.60797 5.70933 5.73273 5.81738 6.04682 6.25678 6.38946 6.60499 7.08468 7.39509 7.56583 8.32287 9.19341 10.81130 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.026130 B = 0.001815 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.322915 B =15423.124919 C =16463.392438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.354 6.354 3 C 0.540 3.460 4 O -0.491 6.491 5 C -0.241 4.241 6 C -0.060 4.060 7 C -0.070 4.070 8 C -0.220 4.220 9 C 0.535 3.465 10 O -0.489 6.489 11 O -0.350 6.350 12 C 0.075 3.925 13 C -0.099 4.099 14 C -0.115 4.115 15 S -0.122 6.122 16 C -0.520 4.520 17 H 0.073 0.927 18 C 0.072 3.928 19 N -0.869 5.869 20 Si 0.920 3.080 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 S 0.303 5.697 25 H 0.107 0.893 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.164 0.836 29 H 0.165 0.835 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.180 17.638 -0.036 28.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.270 6.270 3 C 0.383 3.617 4 O -0.380 6.380 5 C -0.361 4.361 6 C -0.094 4.094 7 C -0.103 4.103 8 C -0.341 4.341 9 C 0.377 3.623 10 O -0.378 6.378 11 O -0.267 6.267 12 C 0.000 4.000 13 C -0.137 4.137 14 C -0.264 4.264 15 S 0.106 5.894 16 C -0.668 4.668 17 H 0.091 0.909 18 C -0.137 4.137 19 N -0.505 5.505 20 Si 0.746 3.254 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 S 0.575 5.425 25 H 0.126 0.874 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.181 0.819 29 H 0.183 0.817 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.128 15.448 -0.043 27.813 hybrid contribution 2.299 2.442 0.006 3.354 sum -20.829 17.890 -0.037 27.458 Atomic orbital electron populations 1.23378 0.74857 1.04361 1.02936 1.86574 1.24428 1.31739 1.84268 1.19708 0.86877 0.82021 0.73124 1.90894 1.65778 1.35891 1.45466 1.24036 0.94629 0.99720 1.17730 1.20519 0.92138 0.98962 0.97784 1.20545 0.95489 0.95766 0.98500 1.24176 0.95901 0.98500 1.15501 1.19640 0.87393 0.81667 0.73633 1.90896 1.46967 1.54747 1.45152 1.86539 1.32407 1.24151 1.83606 1.23397 0.76253 0.97308 1.03036 1.21308 0.97062 0.90826 1.04505 1.23182 0.96075 1.03681 1.03425 1.84656 1.11304 0.96546 1.96896 1.22654 0.90056 0.95182 1.58899 0.90867 1.25019 0.99379 0.94851 0.94486 1.70005 1.35488 0.97993 1.46969 0.86201 0.83019 0.77298 0.78890 1.19904 1.20783 1.19900 1.84747 0.91073 1.03728 1.62921 0.87416 0.91469 0.91462 0.81894 0.81726 0.90708 0.90705 0.90189 0.90186 0.91657 0.91656 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.19 10.57 101.05 1.07 1.26 16 2 O -0.35 -2.86 10.41 -40.80 -0.42 -3.28 16 3 C 0.54 5.04 7.95 34.30 0.27 5.31 16 4 O -0.49 -5.50 16.61 -19.30 -0.32 -5.82 16 5 C -0.24 -2.06 6.46 -36.57 -0.24 -2.30 16 6 C -0.06 -0.45 9.88 -40.68 -0.40 -0.85 16 7 C -0.07 -0.57 9.88 -40.68 -0.40 -0.97 16 8 C -0.22 -2.19 6.46 -36.57 -0.24 -2.43 16 9 C 0.53 6.73 7.95 34.30 0.27 7.00 16 10 O -0.49 -7.19 16.61 -19.29 -0.32 -7.51 16 11 O -0.35 -4.58 10.07 -40.83 -0.41 -4.99 16 12 C 0.07 1.01 5.48 37.16 0.20 1.22 16 13 C -0.10 -1.53 5.60 -26.73 -0.15 -1.68 16 14 C -0.12 -2.21 5.67 37.16 0.21 -2.00 16 15 S -0.12 -3.11 21.44 -107.50 -2.30 -5.41 16 16 C -0.52 -14.64 9.50 30.94 0.29 -14.34 16 17 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 18 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 19 N -0.87 -25.58 13.22 55.49 0.73 -24.85 16 20 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 S 0.30 2.61 22.95 -107.50 -2.47 0.14 16 25 H 0.11 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.16 0.96 8.04 -52.49 -0.42 0.54 16 29 H 0.17 1.12 8.04 -52.49 -0.42 0.70 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 35 H 0.06 1.24 8.14 -51.91 -0.42 0.81 16 36 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 358.51 15.07 5.40 5.40 Total: -1.00 -33.17 358.51 -8.53 -41.70 By element: Atomic # 1 Polarization: 0.45 SS G_CDS: -4.19 Total: -3.74 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 0.80 Total: -7.87 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 0.73 Total: -24.85 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -1.48 Total: -21.60 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -0.50 SS G_CDS: -4.77 Total: -5.27 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.17 -8.53 -41.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805361189.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.287 kcal (2) G-P(sol) polarization free energy of solvation -33.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.87 seconds