Wall clock time and date at job start Sat Apr 11 2020 02:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86806 * 119.99805 * 2 1 4 4 H 1.48496 * 109.47235 * 239.99859 * 3 2 1 5 5 H 1.48494 * 109.47490 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46826 * 120.00046 * 3 2 1 7 7 C 1.38794 * 120.00287 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00023 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99877 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99987 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46933 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.46979 * 180.02562 * 11 10 9 13 13 O 1.45199 * 109.47329 * 179.97438 * 12 11 10 14 14 C 1.34228 * 117.00583 * 179.97438 * 13 12 11 15 15 O 1.20836 * 119.99625 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00633 * 179.97438 * 14 13 12 17 17 H 1.08999 * 109.47082 * 305.00485 * 16 14 13 18 18 O 1.42895 * 109.47402 * 184.99783 * 16 14 13 19 19 C 1.50707 * 109.46572 * 64.99942 * 16 14 13 20 20 C 1.38237 * 120.00392 * 95.23700 * 19 16 14 21 21 C 1.38219 * 120.01452 * 180.25422 * 20 19 16 22 22 C 1.38267 * 120.02305 * 359.74114 * 21 20 19 23 23 C 1.38195 * 120.01443 * 0.02562 * 22 21 20 24 24 C 1.38325 * 120.00626 * 274.99773 * 19 16 14 25 25 Cl 1.73599 * 120.01741 * 0.03066 * 24 19 16 26 26 H 0.96998 * 120.00163 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47135 * 59.99716 * 10 9 7 28 28 H 1.09002 * 109.47246 * 299.99911 * 10 9 7 29 29 H 1.08997 * 109.47384 * 59.99939 * 11 10 9 30 30 H 1.09001 * 109.46985 * 299.99515 * 11 10 9 31 31 H 1.09006 * 109.47348 * 59.99637 * 12 11 10 32 32 H 1.09002 * 109.47184 * 299.99972 * 12 11 10 33 33 H 0.96696 * 114.00341 * 300.00464 * 18 16 14 34 34 H 1.08000 * 119.99782 * 359.97136 * 20 19 16 35 35 H 1.08001 * 119.99260 * 179.72556 * 21 20 19 36 36 H 1.08003 * 119.99358 * 180.02562 * 22 21 20 37 37 H 1.08001 * 120.00765 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0001 9 16 1.1293 -2.7279 -0.0019 10 6 2.5159 -3.8914 -0.0013 11 6 1.9793 -5.3242 -0.0018 12 6 3.1514 -6.3076 -0.0006 13 8 2.6423 -7.6674 -0.0004 14 6 3.5486 -8.6576 0.0000 15 8 4.7284 -8.3966 0.0006 16 6 3.0948 -10.0946 0.0008 17 1 2.4233 -10.2631 0.8428 18 8 4.2311 -10.9529 0.1185 19 6 2.3707 -10.3934 -1.2867 20 6 3.0525 -10.9589 -2.3480 21 6 2.3899 -11.2281 -3.5308 22 6 1.0436 -10.9370 -3.6513 23 6 0.3599 -10.3761 -2.5893 24 6 1.0228 -10.1063 -1.4050 25 17 0.1647 -9.4012 -0.0708 26 1 -0.4850 0.8400 0.0004 27 1 3.1238 -3.7316 0.8891 28 1 3.1252 -3.7309 -0.8908 29 1 1.3712 -5.4842 -0.8920 30 1 1.3704 -5.4844 0.8880 31 1 3.7593 -6.1475 0.8899 32 1 3.7608 -6.1476 -0.8901 33 1 4.8727 -10.8567 -0.5985 34 1 4.1042 -11.1862 -2.2546 35 1 2.9239 -11.6659 -4.3612 36 1 0.5262 -11.1480 -4.5755 37 1 -0.6916 -10.1483 -2.6837 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805480513.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:27:59 Heat of formation + Delta-G solvation = -128.928660 kcal Electronic energy + Delta-G solvation = -22599.470666 eV Core-core repulsion = 18879.669209 eV Total energy + Delta-G solvation = -3719.801456 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.053 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.06760 -39.68418 -37.61134 -36.71090 -36.31953 -33.58261 -32.45599 -32.18214 -31.20801 -28.19439 -26.27575 -25.40017 -23.14827 -22.79570 -21.41568 -21.18112 -18.59050 -18.24109 -17.42198 -17.29843 -16.82802 -16.18523 -16.13325 -15.15897 -14.82777 -14.78462 -14.46872 -14.34171 -14.12930 -13.83930 -13.59586 -12.96536 -12.80244 -12.58011 -12.32449 -12.13007 -11.86557 -11.80681 -11.64000 -11.33573 -11.15853 -11.07284 -11.00091 -10.91709 -10.69917 -10.48490 -10.31237 -9.66157 -9.40026 -9.09753 -9.07782 -8.36889 -6.57270 -6.25397 -3.96586 0.59677 0.75625 1.79680 1.93313 2.38214 3.11889 3.20971 3.22239 3.26779 3.51862 3.72538 3.92342 4.19283 4.25646 4.42482 4.54628 4.66007 4.83844 5.01398 5.08646 5.11108 5.11533 5.15724 5.34069 5.37155 5.46538 5.71938 5.75792 5.76991 5.85835 5.92112 6.13124 6.26896 6.35560 6.43981 6.65588 6.85042 7.52683 7.57955 8.33797 9.20822 10.82713 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.018785 B = 0.002463 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.229521 B =11363.602595 C =11930.653380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.073 0.927 9 S -0.122 6.122 10 C -0.114 4.114 11 C -0.096 4.096 12 C 0.071 3.929 13 O -0.339 6.339 14 C 0.438 3.562 15 O -0.500 6.500 16 C 0.162 3.838 17 H 0.150 0.850 18 O -0.521 6.521 19 C -0.121 4.121 20 C -0.094 4.094 21 C -0.114 4.114 22 C -0.098 4.098 23 C -0.108 4.108 24 C -0.012 4.012 25 Cl -0.043 7.043 26 H 0.268 0.732 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.385 0.615 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.093 -26.121 -5.679 26.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.667 4.667 8 H 0.091 0.909 9 S 0.106 5.894 10 C -0.263 4.263 11 C -0.134 4.134 12 C -0.004 4.004 13 O -0.254 6.254 14 C 0.279 3.721 15 O -0.388 6.388 16 C 0.101 3.899 17 H 0.167 0.833 18 O -0.327 6.327 19 C -0.122 4.122 20 C -0.112 4.112 21 C -0.132 4.132 22 C -0.116 4.116 23 C -0.127 4.127 24 C -0.039 4.039 25 Cl -0.014 7.014 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.235 0.765 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.770 -26.179 -5.017 26.714 hybrid contribution 2.223 1.705 -0.407 2.831 sum 3.993 -24.473 -5.424 25.383 Atomic orbital electron populations 1.70003 1.05927 1.27531 1.47040 1.25010 0.95088 0.99097 0.94508 0.86211 0.79239 0.81133 0.78890 1.19902 1.20779 1.19904 1.22656 0.94557 0.90715 1.58814 0.90912 1.84655 1.08724 0.99156 1.96882 1.23183 1.03455 0.96385 1.03288 1.21262 0.96354 0.91447 1.04356 1.23322 0.97885 0.76600 1.02556 1.86558 1.39527 1.16714 1.82649 1.24295 0.85279 0.89484 0.73042 1.90693 1.18423 1.84623 1.45073 1.20283 0.88273 0.83654 0.97705 0.83333 1.86709 1.33179 1.59759 1.53102 1.19922 0.93058 1.02812 0.96401 1.20869 1.00187 0.97970 0.92202 1.21216 0.94793 0.99745 0.97488 1.21252 0.94503 0.97345 0.98535 1.21151 1.01038 0.99124 0.91346 1.20779 0.91960 0.99841 0.91317 1.98428 1.76232 1.81834 1.44906 0.92182 0.91757 0.91794 0.90343 0.90326 0.91063 0.91213 0.76512 0.84955 0.84911 0.84674 0.84233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.89 13.22 55.49 0.73 -25.15 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -14.84 9.50 30.94 0.29 -14.55 16 8 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 9 S -0.12 -3.18 21.44 -107.50 -2.30 -5.48 16 10 C -0.11 -2.29 5.67 37.16 0.21 -2.08 16 11 C -0.10 -1.57 5.60 -26.73 -0.15 -1.72 16 12 C 0.07 1.03 5.47 37.16 0.20 1.24 16 13 O -0.34 -4.62 8.96 -39.25 -0.35 -4.98 16 14 C 0.44 5.66 7.26 36.00 0.26 5.92 16 15 O -0.50 -7.59 16.07 -25.47 -0.41 -8.00 16 16 C 0.16 1.64 3.25 -29.03 -0.09 1.54 16 17 H 0.15 1.41 7.13 -51.93 -0.37 1.04 16 18 O -0.52 -4.94 12.64 -55.14 -0.70 -5.64 16 19 C -0.12 -1.12 5.04 -104.59 -0.53 -1.65 16 20 C -0.09 -0.70 9.30 -39.59 -0.37 -1.07 16 21 C -0.11 -0.73 10.05 -39.58 -0.40 -1.12 16 22 C -0.10 -0.64 10.05 -39.59 -0.40 -1.04 16 23 C -0.11 -0.86 9.83 -39.54 -0.39 -1.25 16 24 C -0.01 -0.12 6.31 -39.50 -0.25 -0.36 16 25 Cl -0.04 -0.45 26.16 -51.86 -1.36 -1.81 16 26 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 28 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.07 1.03 8.13 -51.93 -0.42 0.60 16 32 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 33 H 0.38 2.59 7.07 45.56 0.32 2.91 16 34 H 0.13 0.69 6.40 -52.49 -0.34 0.35 16 35 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 36 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 37 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 351.91 15.07 5.30 5.30 Total: -1.00 -33.41 351.91 -9.54 -42.94 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -3.73 Total: 0.54 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -1.70 Total: -14.19 kcal Atomic # 7 Polarization: -25.89 SS G_CDS: 0.73 Total: -25.15 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -1.46 Total: -18.62 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -2.30 Total: -5.48 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.36 Total: -1.81 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.41 -9.54 -42.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805480513.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.985 kcal (2) G-P(sol) polarization free energy of solvation -33.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds