Wall clock time and date at job start Sat Apr 11 2020 02:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86797 * 120.00254 * 2 1 4 4 H 1.48492 * 109.47054 * 270.00124 * 3 2 1 5 5 H 1.48506 * 109.46828 * 30.00078 * 3 2 1 6 6 H 1.48503 * 109.47228 * 150.00014 * 3 2 1 7 7 C 1.38808 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99995 * 359.97438 * 7 2 1 9 9 S 1.76197 * 120.00042 * 180.02562 * 7 2 1 10 10 C 1.80994 * 100.00102 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47239 * 179.97438 * 10 9 7 12 12 O 1.20829 * 119.99639 * 0.02562 * 11 10 9 13 13 O 1.34230 * 120.00091 * 179.97438 * 11 10 9 14 14 C 1.45198 * 116.99866 * 179.97438 * 13 11 10 15 15 H 1.08997 * 109.43903 * 330.09473 * 14 13 11 16 16 C 1.53062 * 109.39501 * 210.20314 * 14 13 11 17 17 C 1.53413 * 108.29486 * 191.73363 * 16 14 13 18 18 O 1.42822 * 108.36397 * 64.71120 * 17 16 14 19 19 C 1.35953 * 117.85776 * 310.84108 * 18 17 16 20 20 C 1.39326 * 118.47133 * 197.32093 * 19 18 17 21 21 F 1.35098 * 119.89238 * 0.31023 * 20 19 18 22 22 C 1.38132 * 120.21645 * 180.59342 * 20 19 18 23 23 C 1.38489 * 119.90040 * 359.40799 * 22 20 19 24 24 F 1.35099 * 120.02966 * 180.22518 * 23 22 20 25 25 C 1.38268 * 119.94314 * 0.20866 * 23 22 20 26 26 C 1.38266 * 121.80626 * 17.19788 * 19 18 17 27 27 H 0.96992 * 119.99702 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47055 * 59.99742 * 10 9 7 29 29 H 1.08996 * 109.47348 * 300.00051 * 10 9 7 30 30 H 1.08998 * 109.70592 * 311.43530 * 16 14 13 31 31 H 1.09005 * 109.69744 * 72.03620 * 16 14 13 32 32 H 1.09007 * 109.68405 * 184.42706 * 17 16 14 33 33 H 1.08998 * 109.68437 * 304.94954 * 17 16 14 34 34 H 1.08002 * 120.05366 * 179.69343 * 22 20 19 35 35 H 1.08001 * 119.82816 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2022 0.0001 10 6 4.0866 -2.9846 -0.0001 11 6 5.5731 -3.2326 -0.0002 12 8 6.3411 -2.2999 0.0003 13 8 6.0438 -4.4897 0.0001 14 6 7.4865 -4.6533 -0.0006 15 1 7.9471 -3.8091 -0.5137 16 6 7.8505 -5.9508 -0.7266 17 6 9.3313 -6.2517 -0.4615 18 8 9.4962 -6.5045 0.9344 19 6 8.9547 -5.6159 1.8093 20 6 9.3994 -5.6286 3.1296 21 9 10.3524 -6.5072 3.5107 22 6 8.8651 -4.7497 4.0517 23 6 7.8928 -3.8447 3.6598 24 9 7.3717 -2.9809 4.5584 25 6 7.4562 -3.8257 2.3480 26 6 7.9857 -4.7093 1.4210 27 1 -0.4849 0.8400 0.0004 28 1 3.6439 -3.4315 -0.8904 29 1 3.6433 -3.4319 0.8895 30 1 7.2362 -6.7681 -0.3488 31 1 7.6859 -5.8312 -1.7975 32 1 9.6355 -7.1293 -1.0321 33 1 9.9382 -5.3950 -0.7544 34 1 9.2083 -4.7652 5.0756 35 1 6.6982 -3.1189 2.0443 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806007616.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:28:02 Heat of formation + Delta-G solvation = -183.327892 kcal Electronic energy + Delta-G solvation = -25444.819442 eV Core-core repulsion = 21170.862377 eV Total energy + Delta-G solvation = -4273.957064 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.057 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -49.19503 -49.09028 -41.46127 -40.03295 -37.72900 -36.67163 -33.63441 -32.54447 -31.18460 -30.20411 -29.84968 -26.05800 -25.68800 -24.42250 -23.11483 -21.55939 -20.77765 -18.58397 -18.36653 -18.03897 -17.85208 -17.45500 -16.58881 -16.35363 -16.16609 -15.83536 -15.58292 -15.38404 -15.21443 -15.06036 -14.65988 -14.46137 -14.25806 -13.68142 -13.59368 -13.06818 -12.93071 -12.85125 -12.74617 -12.35468 -12.05806 -11.78359 -11.43526 -11.35807 -11.19992 -11.09836 -10.82669 -10.75722 -10.36163 -9.93571 -9.32568 -9.10746 -8.70033 -8.49841 -7.09834 -6.38507 -4.13897 0.48481 0.65222 2.18540 2.27165 2.62611 2.87050 3.07839 3.24978 3.40854 3.43853 3.50126 3.85551 3.96408 4.14165 4.22024 4.27148 4.45777 4.56322 4.59160 4.67436 4.81535 4.87622 5.00271 5.01100 5.11106 5.21553 5.33089 5.50040 5.53098 5.53555 5.69057 5.72524 5.84869 6.21333 6.31967 6.79379 7.78494 7.84454 8.32936 9.06250 10.70533 Molecular weight = 330.06amu Principal moments of inertia in cm(-1) A = 0.019058 B = 0.003217 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.843892 B = 8702.387690 C = 9687.654537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.098 3.902 3 Si 0.856 3.144 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.235 1.235 7 C -0.524 4.524 8 H 0.092 0.908 9 S -0.136 6.136 10 C -0.102 4.102 11 C 0.475 3.525 12 O -0.483 6.483 13 O -0.341 6.341 14 C 0.134 3.866 15 H 0.108 0.892 16 C -0.157 4.157 17 C 0.065 3.935 18 O -0.304 6.304 19 C 0.104 3.896 20 C 0.099 3.901 21 F -0.123 7.123 22 C -0.153 4.153 23 C 0.104 3.896 24 F -0.125 7.125 25 C -0.111 4.111 26 C -0.127 4.127 27 H 0.273 0.727 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.123 0.877 33 H 0.073 0.927 34 H 0.158 0.842 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.654 -13.708 1.706 24.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.111 4.111 3 Si 0.680 3.320 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.160 1.160 7 C -0.672 4.672 8 H 0.110 0.890 9 S 0.090 5.910 10 C -0.250 4.250 11 C 0.317 3.683 12 O -0.368 6.368 13 O -0.259 6.259 14 C 0.079 3.921 15 H 0.126 0.874 16 C -0.195 4.195 17 C -0.009 4.009 18 O -0.218 6.218 19 C 0.058 3.942 20 C 0.079 3.921 21 F -0.101 7.101 22 C -0.173 4.173 23 C 0.084 3.916 24 F -0.104 7.104 25 C -0.130 4.130 26 C -0.128 4.128 27 H 0.083 0.917 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.115 0.885 31 H 0.120 0.880 32 H 0.141 0.859 33 H 0.091 0.909 34 H 0.175 0.825 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 20.587 -12.639 1.787 24.223 hybrid contribution -0.829 0.004 0.118 0.838 sum 19.758 -12.635 1.905 23.530 Atomic orbital electron populations 1.69925 1.05884 1.27951 1.47385 1.24692 0.94456 0.98936 0.93025 0.86760 0.81871 0.83361 0.79994 1.19099 1.19707 1.15955 1.22245 0.87545 0.97803 1.59565 0.88992 1.84817 1.10313 0.98331 1.97581 1.23061 0.89286 1.05003 1.07634 1.23481 0.92322 0.80505 0.71993 1.90693 1.58651 1.43418 1.44083 1.86693 1.23443 1.31309 1.84411 1.21293 0.79547 1.00084 0.91221 0.87405 1.22350 0.97249 0.97181 1.02704 1.23103 0.95139 1.03850 0.78840 1.86073 1.73247 1.45689 1.16773 1.18488 0.94715 0.91795 0.89219 1.16567 0.92016 0.93001 0.90488 1.91532 1.60857 1.66382 1.91336 1.20907 0.98756 0.96420 1.01189 1.17022 0.96175 0.91355 0.87041 1.91569 1.85148 1.67320 1.66325 1.21194 1.01161 0.99356 0.91256 1.19699 0.98236 0.97722 0.97186 0.91742 0.86918 0.86935 0.88487 0.87984 0.85876 0.90853 0.82471 0.83377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.71 13.97 55.49 0.78 -24.94 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 20.95 27.74 -169.99 -4.72 16.23 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.24 -5.72 6.74 56.52 0.38 -5.34 16 7 C -0.52 -14.50 10.04 30.94 0.31 -14.19 16 8 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 9 S -0.14 -3.25 18.55 -107.50 -1.99 -5.24 16 10 C -0.10 -1.87 6.27 36.01 0.23 -1.64 16 11 C 0.48 7.87 6.42 36.01 0.23 8.10 16 12 O -0.48 -9.00 13.82 -18.75 -0.26 -9.26 16 13 O -0.34 -4.68 9.65 -39.26 -0.38 -5.06 16 14 C 0.13 1.52 2.69 -27.81 -0.07 1.44 16 15 H 0.11 1.24 7.15 -51.93 -0.37 0.87 16 16 C -0.16 -1.21 5.85 -26.49 -0.15 -1.36 16 17 C 0.07 0.43 7.03 37.37 0.26 0.69 16 18 O -0.30 -3.09 10.09 -19.59 -0.20 -3.29 16 19 C 0.10 1.19 6.48 -39.17 -0.25 0.94 16 20 C 0.10 1.12 7.30 -39.22 -0.29 0.83 16 21 F -0.12 -1.40 17.04 2.25 0.04 -1.37 16 22 C -0.15 -1.62 10.00 -39.53 -0.40 -2.02 16 23 C 0.10 1.31 7.30 -39.48 -0.29 1.02 16 24 F -0.13 -1.71 17.27 2.25 0.04 -1.67 16 25 C -0.11 -1.50 9.11 -39.45 -0.36 -1.86 16 26 C -0.13 -1.55 5.58 -104.45 -0.58 -2.13 16 27 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.11 1.91 8.14 -51.91 -0.42 1.49 16 29 H 0.11 1.94 8.14 -51.92 -0.42 1.52 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.12 0.46 8.14 -51.92 -0.42 0.04 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.16 1.28 8.06 -52.49 -0.42 0.85 16 35 H 0.15 2.30 5.16 -52.49 -0.27 2.03 16 LS Contribution 324.20 15.07 4.89 4.89 Total: -1.00 -31.51 324.20 -6.45 -37.96 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -3.18 Total: -0.77 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -1.46 Total: -7.49 kcal Atomic # 7 Polarization: -25.71 SS G_CDS: 0.78 Total: -24.94 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.84 Total: -17.60 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.08 Total: -3.04 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.72 Total: 16.23 kcal Atomic # 16 Polarization: -3.25 SS G_CDS: -1.99 Total: -5.24 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.51 -6.45 -37.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806007616.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.370 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds