Wall clock time and date at job start Sat Apr 11 2020 02:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42104 * 110.54089 * 2 1 4 4 O 1.42098 * 110.54330 * 223.24472 * 2 1 3 5 5 C 1.76201 * 104.44797 * 111.62286 * 2 1 3 6 6 C 1.32742 * 124.69953 * 90.00353 * 5 2 1 7 7 C 1.44472 * 113.08730 * 180.02562 * 6 5 2 8 8 C 1.47033 * 123.47297 * 180.02562 * 7 6 5 9 9 O 1.21558 * 119.99873 * 359.97438 * 8 7 6 10 10 O 1.34804 * 119.99802 * 179.97438 * 8 7 6 11 11 C 1.45197 * 116.99705 * 182.98826 * 10 8 7 12 12 C 1.50703 * 112.84999 * 294.88325 * 11 10 8 13 13 H 1.08000 * 119.99775 * 118.52343 * 12 11 10 14 14 C 1.37880 * 120.00069 * 298.52976 * 12 11 10 15 15 N 1.31512 * 120.00128 * 1.77051 * 14 12 11 16 16 Si 1.86804 * 120.00187 * 181.77370 * 14 12 11 17 17 H 1.48491 * 109.47155 * 179.97438 * 16 14 12 18 18 H 1.48504 * 109.46865 * 300.00090 * 16 14 12 19 19 H 1.48505 * 109.47047 * 59.99407 * 16 14 12 20 20 C 1.53775 * 113.61840 * 66.08394 * 11 10 8 21 21 C 1.53947 * 87.02084 * 89.22696 * 20 11 10 22 22 C 1.53778 * 87.11161 * 25.36430 * 21 20 11 23 23 C 1.36109 * 113.04885 * 0.26226 * 7 6 5 24 24 S 1.70445 * 110.80816 * 359.59578 * 23 7 6 25 25 H 1.08998 * 109.47237 * 308.37783 * 1 2 3 26 26 H 1.09000 * 109.46967 * 68.37734 * 1 2 3 27 27 H 1.09004 * 109.46891 * 188.37477 * 1 2 3 28 28 H 1.07999 * 123.45560 * 359.96318 * 6 5 2 29 29 H 0.97004 * 119.99762 * 355.07132 * 15 14 12 30 30 H 1.08994 * 113.61730 * 203.75292 * 20 11 10 31 31 H 1.09009 * 113.60914 * 334.64867 * 20 11 10 32 32 H 1.09007 * 113.53861 * 270.81309 * 21 20 11 33 33 H 1.09004 * 113.74518 * 139.94798 * 21 20 11 34 34 H 1.09002 * 113.61569 * 220.09100 * 22 21 20 35 35 H 1.08998 * 113.68940 * 89.19891 * 22 21 20 36 36 H 1.07997 * 124.59185 * 179.72720 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9693 -0.9116 5 6 2.2536 -0.6288 1.5862 6 6 2.4422 -1.9129 1.8643 7 6 2.7947 -2.1476 3.2456 8 6 3.0550 -3.4842 3.8003 9 8 2.9774 -4.4645 3.0856 10 8 3.3796 -3.6225 5.1013 11 6 3.6881 -4.9635 5.5647 12 6 2.5037 -5.8929 5.4972 13 1 2.5427 -6.7727 4.8720 14 6 1.3704 -5.6200 6.2336 15 7 1.3097 -4.5305 6.9677 16 14 -0.0789 -6.7978 6.1885 17 1 -1.1643 -6.2806 7.0599 18 1 -0.5767 -6.9169 4.7945 19 1 0.3528 -8.1326 6.6756 20 6 4.9676 -5.5502 4.9455 21 6 5.7320 -4.9132 6.1202 22 6 4.4194 -4.9949 6.9171 23 6 2.8560 -1.0044 3.9816 24 16 2.5022 0.3560 3.0176 25 1 -0.3633 0.6380 0.8056 26 1 -0.3633 0.3787 -0.9554 27 1 -0.3633 -1.0168 0.1497 28 1 2.3415 -2.7015 1.1333 29 1 2.0871 -3.9559 7.0480 30 1 4.9936 -6.6399 4.9473 31 1 5.2195 -5.1214 3.9755 32 1 6.0605 -3.8926 5.9234 33 1 6.5260 -5.5436 6.5207 34 1 4.2294 -4.1184 7.5367 35 1 4.2941 -5.9319 7.4597 36 1 3.0982 -0.9644 5.0333 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810856018.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:28:13 Heat of formation + Delta-G solvation = -97.906698 kcal Electronic energy + Delta-G solvation = -23940.479072 eV Core-core repulsion = 20224.066535 eV Total energy + Delta-G solvation = -3716.412537 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.047 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -39.75002 -37.97748 -37.25964 -36.39698 -36.14638 -34.33534 -32.47739 -30.48583 -29.69040 -26.20948 -25.17619 -24.79700 -23.21443 -22.08145 -19.56140 -19.32537 -18.45823 -18.21642 -17.51786 -16.51752 -16.44052 -15.89029 -15.55533 -15.26412 -14.96630 -14.15540 -13.89480 -13.78528 -13.55090 -13.49775 -13.22557 -13.00060 -12.93716 -12.39409 -12.29365 -12.19141 -12.15319 -11.65475 -11.49350 -11.30800 -11.15924 -10.91072 -10.63206 -10.48821 -10.27928 -10.18705 -10.09221 -9.59961 -9.52377 -9.12097 -8.57558 -8.53448 -8.23251 -6.46924 -4.25105 -0.20674 0.43058 1.22631 1.63604 1.74622 2.60763 3.36684 3.39042 3.57976 3.59777 3.63908 3.77810 3.99760 4.43548 4.48804 4.71552 4.86016 5.20738 5.22224 5.34779 5.36701 5.47581 5.48652 5.62759 5.76690 5.83625 6.05050 6.24762 6.25852 6.60712 6.62488 6.77586 7.00913 7.25186 7.56108 8.03461 8.33437 8.72765 8.87910 9.50839 10.90831 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.016210 B = 0.003858 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.930454 B = 7255.383368 C = 7883.832103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 2.529 3.471 3 O -0.934 6.934 4 O -0.929 6.929 5 C -0.808 4.808 6 C 0.059 3.941 7 C -0.157 4.157 8 C 0.525 3.475 9 O -0.492 6.492 10 O -0.349 6.349 11 C 0.212 3.788 12 C -0.592 4.592 13 H 0.060 0.940 14 C 0.032 3.968 15 N -0.892 5.892 16 Si 1.064 2.936 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.285 1.285 20 C -0.145 4.145 21 C -0.149 4.149 22 C -0.109 4.109 23 C -0.151 4.151 24 S 0.280 5.720 25 H 0.134 0.866 26 H 0.133 0.867 27 H 0.136 0.864 28 H 0.170 0.830 29 H 0.278 0.722 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.388 11.347 -7.994 13.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.799 4.799 2 S 2.705 3.295 3 O -0.932 6.932 4 O -0.927 6.927 5 C -1.007 5.007 6 C 0.026 3.974 7 C -0.172 4.172 8 C 0.365 3.635 9 O -0.381 6.381 10 O -0.266 6.266 11 C 0.178 3.822 12 C -0.629 4.629 13 H 0.078 0.922 14 C -0.176 4.176 15 N -0.527 5.527 16 Si 0.892 3.108 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.211 1.211 20 C -0.183 4.183 21 C -0.186 4.186 22 C -0.146 4.146 23 C -0.290 4.290 24 S 0.547 5.453 25 H 0.153 0.847 26 H 0.152 0.848 27 H 0.155 0.845 28 H 0.187 0.813 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -1.436 12.631 -7.934 14.985 hybrid contribution 1.160 -1.830 0.023 2.167 sum -0.276 10.801 -7.911 13.391 Atomic orbital electron populations 1.30218 1.25125 1.12640 1.11899 1.04523 0.77867 0.74356 0.72748 1.93589 1.77651 1.36211 1.85714 1.93605 1.77547 1.61722 1.59780 1.35266 1.30942 1.07435 1.27056 1.21017 0.87195 0.94586 0.94584 1.20125 1.10477 0.93164 0.93465 1.19782 0.74847 0.87012 0.81831 1.90786 1.47184 1.39628 1.60488 1.86442 1.77573 1.38147 1.24468 1.20924 0.93097 0.77200 0.90987 1.22043 1.01268 1.09636 1.29987 0.92189 1.25861 1.00693 0.98228 0.92806 1.70713 1.32984 1.11720 1.37312 0.83621 0.75629 0.75090 0.76483 1.20696 1.21311 1.21100 1.23363 0.97510 1.00707 0.96677 1.22991 0.96971 1.00023 0.98647 1.22961 0.93622 1.01656 0.96399 1.26383 0.99461 0.97346 1.05824 1.82795 1.62964 1.05391 0.94110 0.84748 0.84823 0.84526 0.81276 0.91018 0.89846 0.92790 0.91290 0.92491 0.92357 0.89223 0.79541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.88 10.80 101.05 1.09 -2.79 16 2 S 2.53 26.03 5.93 -107.50 -0.64 25.39 16 3 O -0.93 -11.64 17.74 -57.54 -1.02 -12.66 16 4 O -0.93 -12.66 17.61 -57.54 -1.01 -13.68 16 5 C -0.81 -10.22 6.16 28.85 0.18 -10.04 16 6 C 0.06 0.91 9.66 -39.01 -0.38 0.54 16 7 C -0.16 -2.84 5.98 -104.64 -0.63 -3.47 16 8 C 0.52 12.05 7.30 34.30 0.25 12.30 16 9 O -0.49 -12.53 14.95 -19.31 -0.29 -12.82 16 10 O -0.35 -8.38 8.75 -40.77 -0.36 -8.74 16 11 C 0.21 5.19 0.11 -90.96 -0.01 5.18 16 12 C -0.59 -16.32 7.35 -34.44 -0.25 -16.58 16 13 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 14 C 0.03 0.88 5.40 -17.82 -0.10 0.78 16 15 N -0.89 -25.48 13.51 55.43 0.75 -24.73 16 16 Si 1.06 24.75 29.90 -169.99 -5.08 19.67 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 C -0.14 -3.16 6.90 -25.83 -0.18 -3.34 16 21 C -0.15 -2.81 8.03 -25.83 -0.21 -3.01 16 22 C -0.11 -2.36 6.67 -25.92 -0.17 -2.53 16 23 C -0.15 -2.25 10.56 29.97 0.32 -1.94 16 24 S 0.28 3.29 22.78 -107.50 -2.45 0.84 16 25 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.13 0.52 8.14 -51.92 -0.42 0.10 16 27 H 0.14 0.74 8.14 -51.92 -0.42 0.31 16 28 H 0.17 2.51 8.01 -52.49 -0.42 2.09 16 29 H 0.28 7.85 5.76 -40.82 -0.24 7.62 16 30 H 0.08 1.79 8.09 -51.93 -0.42 1.37 16 31 H 0.05 1.19 7.32 -51.92 -0.38 0.81 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.06 1.25 7.77 -51.93 -0.40 0.85 16 35 H 0.09 1.96 8.09 -51.93 -0.42 1.54 16 36 H 0.19 2.61 8.02 -52.49 -0.42 2.19 16 LS Contribution 339.01 15.07 5.11 5.11 Total: -1.00 -35.89 339.01 -9.10 -44.99 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -4.02 Total: 1.52 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: -0.09 Total: -24.89 kcal Atomic # 7 Polarization: -25.48 SS G_CDS: 0.75 Total: -24.73 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: -2.68 Total: -47.89 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.08 Total: 19.67 kcal Atomic # 16 Polarization: 29.31 SS G_CDS: -3.09 Total: 26.23 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.89 -9.10 -44.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856018.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.916 kcal (2) G-P(sol) polarization free energy of solvation -35.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds